1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
CGCGGCGGAACCCGTTGCATTACAAGTGCATCACCATGAAGCACCGTCATTCCATGCGCAAGCTGGGTCGGACATCTGCCCACCGATGGGCGCTGCTTAGgttggcgttcgggccgtgatcactggcatttgggtgctgtgggtgggggattggcttgtatgagaggggaaccggagtaacgtacgtttttggtgtttgatgggtgcag
species | Physcomitrella patens |
transcript | PP1S194_11V6.1 |
intron # | 1 |
splice site | 5' |
intron type | U2 |
EST: TCCATGCGCAAGCTGGGTCGGACATCTGCCCACCGATGGGCGCTGCTTAG GAATCTCGTGTCGCAGCTTGTGCAGCATGAGCGAATCGAGACCACTGTTCCEST: gi|162265897|gb|FC442900.1|FC442900
genomic: TCCATGCGCAAGCTGGGTCGGACATCTGCCCACCGATGGGCGCTGCTTAGgttggcgttc ... atgggtgcagGAATCTCGTGTCGCAGCTTGTGCAGCATGAGCGAATCGAGACCACTGTTCC
EST: TCCATGCGCAAGCTGGGTCGGACATCTGCCCACCGATGGGCGCTGCTTAG GAATCTCGTGTCGCAGCTTGTGCAGCATGAGCGAATCGAGACCACTGTTCCEST: gi|67699724|gb|BJ959957.1|BJ959957
genomic: TCCATGCGCAAGCTGGGTCGGACATCTGCCCACCGATGGGCGCTGCTTAGgttggcgttc ... atgggtgcagGAATCTCGTGTCGCAGCTTGTGCAGCATGAGCGAATCGAGACCACTGTTCC
EST: CACCGATGGGCGCTGCTTAG GAATCTCGTGTCGCAGCTTGTGCAGCATGAGCGAATCGAGACCACTGTTCCEST: gi|37838331|gb|BJ596339.1|BJ596339
genomic: CACCGATGGGCGCTGCTTAGgttggcgttc ... atgggtgcagGAATCTCGTGTCGCAGCTTGTGCAGCATGAGCGAATCGAGACCACTGTTCC
EST: TCCATGCGCAAGCTGGGTCGGACATCTGCCCACCGATGGGCGCTGCTTAG GAATCTCGTGTCGCAGCTTGTGCAGCATGAGCGAATCGAGACCACTGTTCCEST: gi|67576224|gb|BJ949048.1|BJ949048
genomic: TCCATGCGCAAGCTGGGTCGGACATCTGCCCACCGATGGGCGCTGCTTAGgttggcgttc ... atgggtgcagGAATCTCGTGTCGCAGCTTGTGCAGCATGAGCGAATCGAGACCACTGTTCC
EST: TCCATGCGCAAGCTGGGTCGGACATCTGCCCACCGATGGGCGCTGCTTAG GAATCTCGTGTCGCAGCTTGTGCAGCATGAGCGAATCGAGACCACTGTTCCEST: gi|18370344|gb|BJ201946.1|BJ201946
genomic: TCCATGCGCAAGCTGGGTCGGACATCTGCCCACCGATGGGCGCTGCTTAGgttggcgttc ... atgggtgcagGAATCTCGTGTCGCAGCTTGTGCAGCATGAGCGAATCGAGACCACTGTTCC
EST: TCCATGCGCAAGCTGGGTCGGACATCTGCCCACCGATGGGCGCTGCTTAG GAATCTCGTGTCGCAGCTTGTGCAGCATGAGCGAATCGAGACCACTGTTCCEST: gi|162265898|gb|FC442901.1|FC442901
genomic: TCCATGCGCAAGCTGGGTCGGACATCTGCCCACCGATGGGCGCTGCTTAGgttggcgttc ... atgggtgcagGAATCTCGTGTCGCAGCTTGTGCAGCATGAGCGAATCGAGACCACTGTTCC
EST: TCCATGCGCAAGCTGGGTCGGACATCTGCCCACCGATGGGCGCTGCTTAG GAATCTCGTGTCGCAGCTTGTGCAGCATGAGCGAATCGAGACCACTGTTCCEST: gi|18360614|gb|BJ192677.1|BJ192677
genomic: TCCATGCGCAAGCTGGGTCGGACATCTGCCCACCGATGGGCGCTGCTTAGgttggcgttc ... atgggtgcagGAATCTCGTGTCGCAGCTTGTGCAGCATGAGCGAATCGAGACCACTGTTCC
EST: TCCATGCGCAAGCTGGGTCGGACATCTGCCCACCGATGGGCGCTGCTTAG GAATCTCGTGTCGCAGCTTGTGCAGCATGAGCGAATCGAGACCACTGTTCCEST: gi|37851175|gb|BJ609183.1|BJ609183
genomic: TCCATGCGCAAGCTGGGTCGGACATCTGCCCACCGATGGGCGCTGCTTAGgttggcgttc ... atgggtgcagGAATCTCGTGTCGCAGCTTGTGCAGCATGAGCGAATCGAGACCACTGTTCC
EST: TCCATGCGCAAGCTGGGTCGGACATCTGCCCACCGATGGGCGCTGCTTAG GAATCTCGTGTCGCAGCTTGTGCAGCATGAGCGAATCGAGACCACTGTTCC
genomic: TCCATGCGCAAGCTGGGTCGGACATCTGCCCACCGATGGGCGCTGCTTAGgttggcgttc ... atgggtgcagGAATCTCGTGTCGCAGCTTGTGCAGCATGAGCGAATCGAGACCACTGTTCC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| CGCGGCGGAACCCGTTGCATTACAAGTGCATCACCATGAAGCACCGTCATTCCATGCGCAAGCTGGGTCGGACATCTGCCCACCGATGGGCGCTGCTTAGgttggcgttcgggccgtgatcactggcatttgggtgctgtgggtgggggattggcttgtatgagaggggaaccggagtaacgtacgtttttggtgtttgatgggtgcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGCT