1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
AACTTTGAGAATCACAAACTGTTAGCCGATCTAGTTGTTGTCCAGTCACTGCCACTGAGGCTCCATCATGAGCTCATCAGGGTACGGCCAAAAGGAGAAGgtgcgattgaattttaatcctcattcttcttctgttgatggaaactgttagtggaaccacatgtcaatcaggaccgcgcttgttaccgcttgcttcgcatgttgaagagggctgggcgaggtcttcaggacttcatggttctgctcacttgctttactgcatggtggatatttcag
species | Physcomitrella patens |
transcript | PP1S193_49V6.1 |
intron # | 1 |
splice site | 5' |
intron type | U2 |
EST: GCCACTGAGGCTCCATCATGAGCTCATCAGGGTACGGCCAAAAGGAGAAG GTTCTGAGTCGAATTGCTGCAAATCGGCTGCAGAAAGAACTTACTGAGTGGEST: gi|100406311|gb|BY955568.1|BY955568
genomic: GCCACTGAGGCTCCATCATGAGCTCATCAGGGTACGGCCAAAAGGAGAAGgtgcgattga ... gatatttcagGTTCTGAGTCGAATTGCTGCAAATCGGCTGCAGAAAGAACTTACTGAGTGG
EST: GCCACTGAGGCTCCATCATGAGCTCATCAGGGTACGGCCAAAAGGAGAAG GTTCTGAGTCGAATTGCTGCAAATCGGCTGCAGAAAGAACTTACTGAGTGGEST: gi|100406553|gb|BY955661.1|BY955661
genomic: GCCACTGAGGCTCCATCATGAGCTCATCAGGGTACGGCCAAAAGGAGAAGgtgcgattga ... gatatttcagGTTCTGAGTCGAATTGCTGCAAATCGGCTGCAGAAAGAACTTACTGAGTGG
EST: GCCACTGAGGCTCCATCATGAGCTCATCAGGGTACGGCCAAAAGGAGAAG GTTCTGAGTCGAATTGCTGCAAATCGGCTGCAGAAAGAACTTACTGAGTGGEST: gi|208359112|gb|DC930444.1|DC930444
genomic: GCCACTGAGGCTCCATCATGAGCTCATCAGGGTACGGCCAAAAGGAGAAGgtgcgattga ... gatatttcagGTTCTGAGTCGAATTGCTGCAAATCGGCTGCAGAAAGAACTTACTGAGTGG
EST: GCCACTGAGGCTCCATCATGAGCTCATCANGGTACGGCCAAAAGGANAAG GTTCTGAGTCNAATTGCTGCAAATCGGCTGCANAAAGAACTTACTGAGTGG
genomic: GCCACTGAGGCTCCATCATGAGCTCATCAGGGTACGGCCAAAAGGAGAAGgtgcgattga ... gatatttcagGTTCTGAGTCGAATTGCTGCAAATCGGCTGCAGAAAGAACTTACTGAGTGG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| AACTTTGAGAATCACAAACTGTTAGCCGATCTAGTTGTTGTCCAGTCACTGCCACTGAGGCTCCATCATGAGCTCATCAGGGTACGGCCAAAAGGAGAAGgtgcgattgaattttaatcctcattcttcttctgttgatggaaactgttagtggaaccacatgtcaatcaggaccgcgcttgttaccgcttgcttcgcatgttgaagagggctgggcgaggtcttcaggacttcatggttctgctcacttgctttactgcatggtggatatttcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAA