1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' |
TGTTTGAAAACCAAGGGTGGAGGATTTTTTGGGGGGGGTAGGGGAGGAAAATTAACGTCGGGAGGATTGGATTCGCTAGTTTGCAACCGCCGTTTATATGgtacattttccaccatgagtggtttctgtgacttcgaatttgtttcgatgatggaccttcggtgcttcggactttggaaagttgacttgttgagagaggg...
species | Physcomitrella patens |
transcript | PP1S188_78V6.1 |
intron # | 1 |
splice site | 5' |
intron type | U2 |
EST: ATTAACGTCGGGAGGATTGGATTCGCTAGTTTGCAACCGCCGTTTATATG ATAGACGTGGGACCGCGGTGCTGTTATGCATGGCGGACCATCCAATACCGGEST: gi|41107785|gb|BJ179558.1|BJ179558
genomic: ATTAACGTCGGGAGGATTGGATTCGCTAGTTTGCAACCGCCGTTTATATGgtacattttc ... gctgctgcagATAGACGTGGGACCGCGGTGCTGTTATGCATGGCGGACCATCCAATACCGG
EST: ATTAACGTCGGGAGGATTGGATTCGCTAGTTTGCAACCGCCGTTTATATG ATAGACGTGGGACCGCGGTGCTGTTATGCATGGCGGACCATCCAATACCGGEST: gi|41107780|gb|BJ177294.1|BJ177294
genomic: ATTAACGTCGGGAGGATTGGATTCGCTAGTTTGCAACCGCCGTTTATATGgtacattttc ... gctgctgcagATAGACGTGGGACCGCGGTGCTGTTATGCATGGCGGACCATCCAATACCGG
EST: ATTAACGTCGGGAGGATTGGATTCGCTAGTTTGCAACCGCCGTTTATATG ATAGACGTGGGACCGCGGTGCTGTTATGCATGGCGGACCATCCAATACCGGEST: gi|41107794|gb|BJ186194.1|BJ186194
genomic: ATTAACGTCGGGAGGATTGGATTCGCTAGTTTGCAACCGCCGTTTATATGgtacattttc ... gctgctgcagATAGACGTGGGACCGCGGTGCTGTTATGCATGGCGGACCATCCAATACCGG
EST: ATTAACGTCGGGAGGATTGGATTCGCTAGTTTGCAACCGCCGTTTATATG ATAGACGTGGGACCGCGGTGCTGTTATGCATGGCGGACCATCCAATACCGGEST: gi|41107795|gb|BJ186609.1|BJ186609
genomic: ATTAACGTCGGGAGGATTGGATTCGCTAGTTTGCAACCGCCGTTTATATGgtacattttc ... gctgctgcagATAGACGTGGGACCGCGGTGCTGTTATGCATGGCGGACCATCCAATACCGG
EST: ATTAACGTCGGGAGGATTGGATTCGCTAGTTTGCAACCGCCGTTTATATG ATAGACGTGGGACCGCGGTGCTGTTATGCATGGCGGACCATCCAATACCGGEST: gi|41107777|gb|BJ175972.1|BJ175972
genomic: ATTAACGTCGGGAGGATTGGATTCGCTAGTTTGCAACCGCCGTTTATATGgtacattttc ... gctgctgcagATAGACGTGGGACCGCGGTGCTGTTATGCATGGCGGACCATCCAATACCGG
EST: ATTAACGTCGGGAGGATTGGATTCGCTAGTTTGCAACCGCCGTTTATATG ATAGACGTGGGACCGCGGTGCTGTTATGCATGGCGGACCATCCAATACCGG
genomic: ATTAACGTCGGGAGGATTGGATTCGCTAGTTTGCAACCGCCGTTTATATGgtacattttc ... gctgctgcagATAGACGTGGGACCGCGGTGCTGTTATGCATGGCGGACCATCCAATACCGG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TGTTTGAAAACCAAGGGTGGAGGATTTTTTGGGGGGGGTAGGGGAGGAAAATTAACGTCGGGAGGATTGGATTCGCTAGTTTGCAACCGCCGTTTATATGgtacattttccaccatgagtggtttctgtgacttcgaatttgtttcgatgatggaccttcggtgcttcggactttggaaagttgacttgttgagagaggg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAT