Sequence
atgc intronic sequence ATGC exonic sequenceAAGAATTGCTCGGTTCTTGAAGTCTGGGAAGTTCGCCGAGCGCGTTGGAGCTGGGGCCCCTGTCTACCTTGCTGCAGTGCTTGAATATCTAGCTGCTGAGgtgagcatttccgcttctgacctggttttggagattctgtcttttttaacttttaggtcgcttgcataatttcttcgcgaagctctgatagctggtgctc...
Basic information
species | Physcomitrella patens |
transcript | PP1S188_35V6.1 |
intron # | 1 |
splice site | 5' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: PP1S188_35V6.1 (Physcomitrella patens), 5'ss of exon 1
lower sequence: GLYMA19G42760.1 (Glycine max), 5'ss of exon 1
AAGAATTGCTCGGTTCTTGAAGTCTGGGAAGTTCGCCGAGCGCGTTGGAGCTGGGGCCCCTGTCTACCTTGCTGCAGTGCTTGAATATCTAGCTGCTGAGgtgagcatttccgcttctgacctggttttgg-------agattctgtcttttttaacttttaggtcgctt---gcataatttct-tcgcgaagctctgatagctg---gtgctc------------------------------------------------------------------
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AAGAATCGCTCGATTCCTTAAGGCTGGGAAATACGCTGAGCGTGTTGGTGCTGGTGCTCCTGTGTACCTCTCTGCAGTGCTCGAGTATCTCGCTGCTGAGgtttgt-tttggattgtcgattaggtttagatttgattagttcttgtgtttttgatcagtctgtttggtcttggtttaatttttgttttaaagttttgattttttattgtgttctgattgacctaattttattttgaatcaatcgaatttggtttgttgatgatgtgtgtttttgtttagMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|2950257|gb|Z98084.1|Z98084EST: CTTGCTGCAGTGCTTGAATATCTANCTGCTGAG GTTCTTGAGCTGGCTGGAAATGCTGCGANAGACAACAAGAAGAATCGTATC
genomic: CTTGCTGCAGTGCTTGAATATCTAGCTGCTGAGgtgagcattt ... ttatgcgtagGTTCTTGAGCTGGCTGGAAATGCTGCGAGAGACAACAAGAAGAATCGTATC
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
AAGAATTGCTCGGTTCTTGAAGTCTGGGAAGTTCGCCGAGCGCGTTGGAGCTGGGGCCCCTGTCTACCTTGCTGCAGTGCTTGAATATCTAGCTGCTGAGgtgagcatttccgcttctgacctggttttggagattctgtcttttttaacttttaggtcgcttgcataatttcttcgcgaagctctgatagctggtgctc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGCT