1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' |
GGGGTTGCCCGAGTGTAAAGTATCTTTGGCAGAGCATCAGCCGTCGGAGGGTGACAAAGGGAAGCCTATACATTACGTTGTGGCCAGCGAGGATTTGCAGgtaactgagattctcactgagtgccatttttcagtttccgctcagcagcctcttacattccagtgatgttttaaaagattataaagccgaagtccacaga...
species | Physcomitrella patens |
transcript | PP1S181_117V6.1 |
intron # | 1 |
splice site | 5' |
intron type | U2 |
EST: GTGACAAAGGGAAGCCTATACATTACGTTGTGGCCAGCGAGGATTTGCAG CCCGGCGAATTGGCATTAACTATCCCCAAGTCCCTTGTTGTTACACTGGAGEST: gi|162161114|gb|FC336462.1|FC336462
genomic: GTGACAAAGGGAAGCCTATACATTACGTTGTGGCCAGCGAGGATTTGCAGgtaactgaga ... ccgcttgcagCCCGGCGAATTGGCATTAACTATCCCCAAGTCCCTTGTTGTTACACTGGAG
EST: GTGACAAAGGGAAGCCTATACATTACGTTGTGGCCAGCGAGGATTTGCAG CCCGGCGAATTGGCATTAACTATCCCCAAGTCCCTTGTTGTTACACTGGAGEST: gi|162258113|gb|FC433895.1|FC433895
genomic: GTGACAAAGGGAAGCCTATACATTACGTTGTGGCCAGCGAGGATTTGCAGgtaactgaga ... ccgcttgcagCCCGGCGAATTGGCATTAACTATCCCCAAGTCCCTTGTTGTTACACTGGAG
EST: GTGACAAAGGGAAGCCTATACATTACGTTGTGGCCAGCGAGGATTTGCAG CCCGGCGAATTGGCATTAACTATCCCCAAGTCCCTTGTTGTTACACTGGAGEST: gi|162221408|gb|FC397217.1|FC397217
genomic: GTGACAAAGGGAAGCCTATACATTACGTTGTGGCCAGCGAGGATTTGCAGgtaactgaga ... ccgcttgcagCCCGGCGAATTGGCATTAACTATCCCCAAGTCCCTTGTTGTTACACTGGAG
EST: GTGACAAAGGGAAGCCTATACATTACGTTGTGGCCAGCGAGGATTTGCAG CCCGGCGAATTGGCATTAACTATCCCCAAGTCCCTTGTTGTTACACTGGAGEST: gi|162163592|gb|FC339502.1|FC339502
genomic: GTGACAAAGGGAAGCCTATACATTACGTTGTGGCCAGCGAGGATTTGCAGgtaactgaga ... ccgcttgcagCCCGGCGAATTGGCATTAACTATCCCCAAGTCCCTTGTTGTTACACTGGAG
EST: GTGACAAAGGGAAGCCTATACATTACGTTGTGGCCAGCGAGGATTTGCAG CCCGGCGAATTGGCATTAACTATCCCCAAGTCCCTTGTTGTTACACTGGAGEST: gi|162228257|gb|FC404973.1|FC404973
genomic: GTGACAAAGGGAAGCCTATACATTACGTTGTGGCCAGCGAGGATTTGCAGgtaactgaga ... ccgcttgcagCCCGGCGAATTGGCATTAACTATCCCCAAGTCCCTTGTTGTTACACTGGAG
EST: GTGACAAAGGGAAGCCTATACATTACGTTGTGGCCAGCGAGGATTTGCAG CCCGGCGAATTGGCATTAACTATCCCCAAGTCCCTTGTTGTTACACTGGAGEST: gi|162162497|gb|FC339215.1|FC339215
genomic: GTGACAAAGGGAAGCCTATACATTACGTTGTGGCCAGCGAGGATTTGCAGgtaactgaga ... ccgcttgcagCCCGGCGAATTGGCATTAACTATCCCCAAGTCCCTTGTTGTTACACTGGAG
EST: TGACAAAGGGAAGCCTATACATTACGTTGTGGCCAGCGAGGATTTGCAG CCCGGCGAATTGGCATTAACTATCCCCAAGTCCCTTGTTGTTACACTGGAGEST: gi|162150814|gb|FC327086.1|FC327086
genomic: TGACAAAGGGAAGCCTATACATTACGTTGTGGCCAGCGAGGATTTGCAGgtaactgaga ... ccgcttgcagCCCGGCGAATTGGCATTAACTATCCCCAAGTCCCTTGTTGTTACACTGGAG
EST: GTGACAAAGGGAAGCCTATACATTACGTTGTGGCCAGCGAGGATTTGCAG CCCGGCGAATTGGCATTAACTATCCCCAAGTCCCTEST: gi|162177904|gb|FC355154.1|FC355154
genomic: GTGACAAAGGGAAGCCTATACATTACGTTGTGGCCAGCGAGGATTTGCAGgtaactgaga ... ccgcttgcagCCCGGCGAATTGGCATTAACTATCCCCAAGTCCCT
EST: GTGACAAAGGGAAGCCTATACATTACGTTGTGGCCAGCGAGGATTTGCAG CCCGGCGAATTGGCATTAACTATCCCCAAGTCCCTTGTTGTTACACTGGAGEST: gi|162190740|gb|FC367002.1|FC367002
genomic: GTGACAAAGGGAAGCCTATACATTACGTTGTGGCCAGCGAGGATTTGCAGgtaactgaga ... ccgcttgcagCCCGGCGAATTGGCATTAACTATCCCCAAGTCCCTTGTTGTTACACTGGAG
EST: GTGACAAAGGGAAGCCTATACATTACGTTGTGGCCAGCGAGGATTTGCAG CCCGGCGAATTGGCATTAACTATCCCCAAGTCCCTTGTTGTTACACTGGAGEST: gi|162152120|gb|FC328710.1|FC328710
genomic: GTGACAAAGGGAAGCCTATACATTACGTTGTGGCCAGCGAGGATTTGCAGgtaactgaga ... ccgcttgcagCCCGGCGAATTGGCATTAACTATCCCCAAGTCCCTTGTTGTTACACTGGAG
EST: GTGACAAAGGGAAGCCTATACATTACGTTGTGGCCAGCGAGGATTTGCAG CCCGGCGAATTGGCATTAACTATCCCCAAGTCCCTTGTTGTTACACTGGAGEST: gi|162150815|gb|FC327087.1|FC327087
genomic: GTGACAAAGGGAAGCCTATACATTACGTTGTGGCCAGCGAGGATTTGCAGgtaactgaga ... ccgcttgcagCCCGGCGAATTGGCATTAACTATCCCCAAGTCCCTTGTTGTTACACTGGAG
EST: GTGACAAAGGGAAGCCTATACATTACGTTGTGGCCAGCGAGGATTTGCAG CCCGGCGAATTGGCATTAACTATCCCCAAGTEST: gi|100437642|gb|BY979755.1|BY979755
genomic: GTGACAAAGGGAAGCCTATACATTACGTTGTGGCCAGCGAGGATTTGCAGgtaactgaga ... ccgcttgcagCCCGGCGAATTGGCATTAACTATCCCCAAGT
EST: GTGACAAAGGGAAGCCTATACATTACGTTGTGGGCAGCGAGGATTTGCAG CCCGGCGAATTGGCATTAACTATCCCCAAGTCCEST: gi|162205221|gb|FC380903.1|FC380903
genomic: GTGACAAAGGGAAGCCTATACATTACGTTGTGGCCAGCGAGGATTTGCAGgtaactgaga ... ccgcttgcagCCCGGCGAATTGGCATTAACTATCCCCAAGTCC
EST: GTGACAAAGGGAAGCCTATACATTACGTTGTGGCCAGCGAGGATTTGCAG CCCGGCGAATTGGCATTAACTATCCCCAAGTCCCTTGTTGTTACACTGGAG
genomic: GTGACAAAGGGAAGCCTATACATTACGTTGTGGCCAGCGAGGATTTGCAGgtaactgaga ... ccgcttgcagCCCGGCGAATTGGCATTAACTATCCCCAAGTCCCTTGTTGTTACACTGGAG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GGGGTTGCCCGAGTGTAAAGTATCTTTGGCAGAGCATCAGCCGTCGGAGGGTGACAAAGGGAAGCCTATACATTACGTTGTGGCCAGCGAGGATTTGCAGgtaactgagattctcactgagtgccatttttcagtttccgctcagcagcctcttacattccagtgatgttttaaaagattataaagccgaagtccacaga
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAT