1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
CCCTGCTCATCATCATATCTCTTGCTACTCTGTCTGCAGCCATGGCTGTCGGGAAGAACAAGCGGATCTCCAAGGGGAAGAAGGGTGGCAAGAAGAAAATgtaacgtccgctggctgtctgagctctttacgacagtcgaatgtgtaatttcatttttgtgagttattgagggtttctgctaacttgacgacgtgggagtggtgtgcag
species | Physcomitrella patens |
transcript | PP1S17_306V6.1 |
intron # | 1 |
splice site | 5' |
intron type | U2 |
EST: GGGAAGAACAAGCGGATCTCCAAGGGGAAGAAGGGTGGCAAGAAGAAAAT TGTCGACCCCTTCTCCAAGAAGGACTGGTATGATATCAAGGCTTCTAACACEST: gi|208344601|gb|DC909160.1|DC909160
genomic: GGGAAGAACAAGCGGATCTCCAAGGGGAAGAAGGGTGGCAAGAAGAAAATgtaacgtccg ... tggtgtgcagTGTCGACCCCTTCTCCAAGAAGGACTGGTATGATATCAAGGCTCCTAACAC
EST: GGGAAGAACAAGCGGATCTCCAAGGGGAAGAAGGGTGGCAAGAAGAAAAT TGTCGACCCCTTCTCCAAGAAGGACTGGTATGATATCAAGGCTCCTAACACEST: gi|162268511|gb|FC444384.1|FC444384
genomic: GGGAAGAACAAGCGGATCTCCAAGGGGAAGAAGGGTGGCAAGAAGAAAATgtaacgtccg ... tggtgtgcagTGTCGACCCCTTCTCCAAGAAGGACTGGTATGATATCAAGGCTCCTAACAC
EST: GGAAGAACAAGCGCGATCTCCAAGGGGAAGAAGGGTGGCAAGAAGAAAAT TGTCGACCCCTTCTCCAAGAAGGACTGGTATGATATCAAGGCTCCTAACACEST: gi|208389506|gb|DC929431.1|DC929431
genomic: GGAAGAACAAGCG-GATCTCCAAGGGGAAGAAGGGTGGCAAGAAGAAAATgtaacgtccg ... tggtgtgcagTGTCGACCCCTTCTCCAAGAAGGACTGGTATGATATCAAGGCTCCTAACAC
EST: GGGAAGAACAAGCGGATCTCCAAGGGGAAGAAGGGTGGCAAGAAGAAAAT TGTCGACCCCTTCTCCAAGAAGGACTGGTATGATATCAAGGCTCCTAACACEST: gi|18332464|gb|BJ164477.1|BJ164477
genomic: GGGAAGAACAAGCGGATCTCCAAGGGGAAGAAGGGTGGCAAGAAGAAAATgtaacgtccg ... tggtgtgcagTGTCGACCCCTTCTCCAAGAAGGACTGGTATGATATCAAGGCTCCTAACAC
EST: GGGAAGAACAAGCGGATCTCCAAGGGGAAGAAGGGTGGCAAGAAGAAAAT TGTCGACCCCTTCTCCAAGAAGGACTGGTATGATATCAAGGCTCCTAACACEST: gi|18358607|gb|BJ190666.1|BJ190666
genomic: GGGAAGAACAAGCGGATCTCCAAGGGGAAGAAGGGTGGCAAGAAGAAAATgtaacgtccg ... tggtgtgcagTGTCGACCCCTTCTCCAAGAAGGACTGGTATGATATCAAGGCTCCTAACAC
EST: GGGAAGAACAAGCGGATCTCCAAGGGGAAGAAGGGTGGCAAGAAGAAAAT TGTCGACCCCTTCTCCAAGAAGGACTGGTATGATATCAAGGCTCCTAACACEST: gi|100426483|gb|BY958921.1|BY958921
genomic: GGGAAGAACAAGCGGATCTCCAAGGGGAAGAAGGGTGGCAAGAAGAAAATgtaacgtccg ... tggtgtgcagTGTCGACCCCTTCTCCAAGAAGGACTGGTATGATATCAAGGCTCCTAACAC
EST: GGGAAGAACAAGCGGATCTCCAAGGGGAAGAAGGGTGGCAAGAAGAAAAT TGTCGACCCCTTCTCCAAGAAGGACTGGTATGATATCAAGGCTCCTAACACEST: gi|18374279|gb|BJ205857.1|BJ205857
genomic: GGGAAGAACAAGCGGATCTCCAAGGGGAAGAAGGGTGGCAAGAAGAAAATgtaacgtccg ... tggtgtgcagTGTCGACCCCTTCTCCAAGAAGGACTGGTATGATATCAAGGCTCCTAACAC
EST: GGGAAGAACAAGCGGATCTCCAAGGGGAAGAAGGGTGGCAAGAAGAAAAT TGTCGACCCCTTCTCCAAGAAGGACTGGTATGATATCAAGGCTCCTAACACEST: gi|208400702|gb|DC904880.1|DC904880
genomic: GGGAAGAACAAGCGGATCTCCAAGGGGAAGAAGGGTGGCAAGAAGAAAATgtaacgtccg ... tggtgtgcagTGTCGACCCCTTCTCCAAGAAGGACTGGTATGATATCAAGGCTCCTAACAC
EST: GGGAAGAACAAGCGGATCTCCAAGGGGAAGAAGGGTGGCAAGAAGAAAAT TGTCGACCCCTTCTCCAAGAAGGACTGGTATGATATCAAGGCTCCTAACACEST: gi|18351511|gb|BJ183563.1|BJ183563
genomic: GGGAAGAACAAGCGGATCTCCAAGGGGAAGAAGGGTGGCAAGAAGAAAATgtaacgtccg ... tggtgtgcagTGTCGACCCCTTCTCCAAGAAGGACTGGTATGATATCAAGGCTCCTAACAC
EST: GGGAAGAACAAGCGGATCTCCAAGGGGAAGAAGGGTGGCAAGAAGAAAAT TGTCGACCCCTTCTCCAAGAAGGACTGGTATGATATCAAGGCTCCTAACACEST: gi|18343480|gb|BJ175518.1|BJ175518
genomic: GGGAAGAACAAGCGGATCTCCAAGGGGAAGAAGGGTGGCAAGAAGAAAATgtaacgtccg ... tggtgtgcagTGTCGACCCCTTCTCCAAGAAGGACTGGTATGATATCAAGGCTCCTAACAC
EST: GGGAAGAACAAGCGGATCTCCAAGGGGAAGAAGGGTGGCAAGAAGAAAAT TGTCGACCCCTTCTCCAAGAAGGACTGGTATGATATCAAGGCTCCTAACACEST: gi|208399117|gb|DC908226.1|DC908226
genomic: GGGAAGAACAAGCGGATCTCCAAGGGGAAGAAGGGTGGCAAGAAGAAAATgtaacgtccg ... tggtgtgcagTGTCGACCCCTTCTCCAAGAAGGACTGGTATGATATCAAGGCTCCTAACAC
EST: GGGAAGAACAAGCGGATCTCCAAGGGGAAGAAGGGTGGCAAGAAGAAAAT TGTCAACCCCTTCTCCAAGAAGGACTGGTATGATATCAAGGCTCCTAACACEST: gi|162264535|gb|FC440857.1|FC440857
genomic: GGGAAGAACAAGCGGATCTCCAAGGGGAAGAAGGGTGGCAAGAAGAAAATgtaacgtccg ... tggtgtgcagTGTCGACCCCTTCTCCAAGAAGGACTGGTATGATATCAAGGCTCCTAACAC
EST: GGGAAGAACAAGCGGATCTCCAAGGGGAAGAAGGGTGGCAAGAAGAAAAT TGTCGACCCCTTCTCCAAGAAGGACTGGTATGATATCAAGGCTCCTAACACEST: gi|67718647|gb|BJ968906.1|BJ968906
genomic: GGGAAGAACAAGCGGATCTCCAAGGGGAAGAAGGGTGGCAAGAAGAAAATgtaacgtccg ... tggtgtgcagTGTCGACCCCTTCTCCAAGAAGGACTGGTATGATATCAAGGCTCCTAACAC
EST: GGGAAGAACAAGCGGATCTCCAAGGGGAAGAAGGGTGGCAAGAAGAAAAT TGTCGACCCCTTCTCCAAGAAGGACTGGTATGATATCAAGGCTCCTAACACEST: gi|162279348|gb|FC455271.1|FC455271
genomic: GGGAAGAACAAGCGGATCTCCAAGGGGAAGAAGGGTGGCAAGAAGAAAATgtaacgtccg ... tggtgtgcagTGTCGACCCCTTCTCCAAGAAGGACTGGTATGATATCAAGGCTCCTAACAC
EST: GGGAAGAACAAGCGGATCTCCAAGGGGAAGAAGGGTGGCAAGAAGAAAAT TGTCGACCCCTTCTCCAAGAAGGACTGGTATGATATCAAGGCTCCTAACACEST: gi|162278252|gb|FC454591.1|FC454591
genomic: GGGAAGAACAAGCGGATCTCCAAGGGGAAGAAGGGTGGCAAGAAGAAAATgtaacgtccg ... tggtgtgcagTGTCGACCCCTTCTCCAAGAAGGACTGGTATGATATCAAGGCTCCTAACAC
EST: AGCGGATCTCCAAGGGGAAGAAGGGTGGCAAGAAGAAAAT TGTCGACCCCTTCTCCAAGAAGGACTGGTATGATATCAAGGCTCCTAACACEST: gi|208361818|gb|DC939040.1|DC939040
genomic: AGCGGATCTCCAAGGGGAAGAAGGGTGGCAAGAAGAAAATgtaacgtccg ... tggtgtgcagTGTCGACCCCTTCTCCAAGAAGGACTGGTATGATATCAAGGCTCCTAACAC
EST: GGGAAGAACAAGCGGATCTCCAAGGGGAAGAAGGGTGGCAAGAAGAAAAT TGTCGACCCCTTCTCCAAGAAGGACTGGTATGATATCAAGGCTCCTAACACEST: gi|208387862|gb|DC929206.1|DC929206
genomic: GGGAAGAACAAGCGGATCTCCAAGGGGAAGAAGGGTGGCAAGAAGAAAATgtaacgtccg ... tggtgtgcagTGTCGACCCCTTCTCCAAGAAGGACTGGTATGATATCAAGGCTCCTAACAC
EST: GGGAAGAACAAGCGGATCTCCAAGGGGAAGAAGGGTGGCAAGAAGAAAAT TGTCGACCCCTTCTCCAAGAAGGACTGGTATGATATCAAGGCTCCTAACACEST: gi|208349984|gb|DC910219.1|DC910219
genomic: GGGAAGAACAAGCGGATCTCCAAGGGGAAGAAGGGTGGCAAGAAGAAAATgtaacgtccg ... tggtgtgcagTGTCGACCCCTTCTCCAAGAAGGACTGGTATGATATCAAGGCTCCTAACAC
EST: GGGAAGAACAAGCGGATCTCCAAGGGGAAGAAGGGTGGCAAGAAGAAAAT TGTCGACCCCTTCTCCAAGAAGGACTGGTATGATATCAAGGCTCCTAACACEST: gi|162277304|gb|FC453734.1|FC453734
genomic: GGGAAGAACAAGCGGATCTCCAAGGGGAAGAAGGGTGGCAAGAAGAAAATgtaacgtccg ... tggtgtgcagTGTCGACCCCTTCTCCAAGAAGGACTGGTATGATATCAAGGCTCCTAACAC
EST: GGGAAGAACAAGCGGATCTCCAAGGGGAAGAAGGGTGGCAAGAAGAAAAT TGTCGACCCCTTCTCCAAGAAGGACTGGTATGATATCAAGGCTCCTAACACEST: gi|100417991|gb|BY993284.1|BY993284
genomic: GGGAAGAACAAGCGGATCTCCAAGGGGAAGAAGGGTGGCAAGAAGAAAATgtaacgtccg ... tggtgtgcagTGTCGACCCCTTCTCCAAGAAGGACTGGTATGATATCAAGGCTCCTAACAC
EST: GGGAAGAACAAGCGGATCTCCAAGGGGAAGAAGGGTGGCAAGAAGAAAAT TGTCGACCCCTTCTCCAAGAAGGACTGGTATGATATCAAGGCTCCTAACACEST: gi|18331779|gb|BJ163790.1|BJ163790
genomic: GGGAAGAACAAGCGGATCTCCAAGGGGAAGAAGGGTGGCAAGAAGAAAATgtaacgtccg ... tggtgtgcagTGTCGACCCCTTCTCCAAGAAGGACTGGTATGATATCAAGGCTCCTAACAC
EST: GGGAAGAACAAGCGGATCTCCAAGGGGAAGAAGGGTGGCAAGAAGAAAAT TGTCGACCCCTTCTCCAAGAAGGACTGGTATGATATCAAGGCTCCTAACACEST: gi|162227859|gb|FC403667.1|FC403667
genomic: GGGAAGAACAAGCGGATCTCCAAGGGGAAGAAGGGTGGCAAGAAGAAAATgtaacgtccg ... tggtgtgcagTGTCGACCCCTTCTCCAAGAAGGACTGGTATGATATCAAGGCTCCTAACAC
EST: GGGAAGAACAAGCGGATCTCCAAGGGGAAGAAGGGTGGCAAGAAGAAAAT TGTCGACCCCTTCTCCAAGAAGGACTGGTATGATATCAAGGCTCCTAACACEST: gi|208376911|gb|DC906852.1|DC906852
genomic: GGGAAGAACAAGCGGATCTCCAAGGGGAAGAAGGGTGGCAAGAAGAAAATgtaacgtccg ... tggtgtgcagTGTCGACCCCTTCTCCAAGAAGGACTGGTATGATATCAAGGCTCCTAACAC
EST: GGGAAGAACAAGCGGATCTCCAAGGGGAAGAAGGGTGGCAAGAAGAAAAT TGTCGACCCCTTCTCCAAGAAGGACTGGTATGATATCAAGGCTCCTAACACEST: gi|208378354|gb|DC923025.1|DC923025
genomic: GGGAAGAACAAGCGGATCTCCAAGGGGAAGAAGGGTGGCAAGAAGAAAATgtaacgtccg ... tggtgtgcagTGTCGACCCCTTCTCCAAGAAGGACTGGTATGATATCAAGGCTCCTAACAC
EST: AGGGGAAGAAGGGTGGCCAGAAG-AAAN TGTCGACCCNTT-TCCAAGAAGGACT-GTATGATATCAAGGNTCCTAACA-EST: gi|67716290|gb|BJ966550.1|BJ966550
genomic: AGGGGAAGAAGGGTGGCAAGAAGAAAATgtaacgtccg ... tggtgtgcagTGTCGACCCCTTCTCCAAGAAGGACTGGTATGATATCAAGGCTCCTAACAC
EST: GGGAAGAACAAGCGGATCTCCAAGGGGAAGAAGGGTGGCAAGAAGAAAAT TGTCGACCCCTTCTCCAAGAAGGACTGGTATGATATCAAGGCTCCTAACACEST: gi|208377740|gb|DC940852.1|DC940852
genomic: GGGAAGAACAAGCGGATCTCCAAGGGGAAGAAGGGTGGCAAGAAGAAAATgtaacgtccg ... tggtgtgcagTGTCGACCCCTTCTCCAAGAAGGACTGGTATGATATCAAGGCTCCTAACAC
EST: GGGAAGAACAAGCGGATCTCCAAGGGGAAGAAGGGTGGCAAGAAGAAAAT TGTCGACCCCTTCTCCAAGAAGGACTGGTATGATATCAAGGCTCCTAACAC
genomic: GGGAAGAACAAGCGGATCTCCAAGGGGAAGAAGGGTGGCAAGAAGAAAATgtaacgtccg ... tggtgtgcagTGTCGACCCCTTCTCCAAGAAGGACTGGTATGATATCAAGGCTCCTAACAC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| CCCTGCTCATCATCATATCTCTTGCTACTCTGTCTGCAGCCATGGCTGTCGGGAAGAACAAGCGGATCTCCAAGGGGAAGAAGGGTGGCAAGAAGAAAATgtaacgtccgctggctgtctgagctctttacgacagtcgaatgtgtaatttcatttttgtgagttattgagggtttctgctaacttgacgacgtgggagtggtgtgcag
- - - - - - - - - - - - - - - - - - - - - - - - - GGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAA