Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CCCTGCCTCCCACTGCTGCCGCTGCTCCGTCCTCCGCAACAATGGCGGTCGGCAAGAACAAGCGGATTTCCAAGGGAAAGAAGGGTGGCAAGAAGAAAATgtacaccttccctaccttgccctccattacctccagtgccgcacttgtaggtttgtgttgcttccaaatgttccttgagcatttggtctaacatggagatgtttgagtcttgtgcag

Basic information

species Physcomitrella patens
transcript PP1S179_15V6.1
intron # 1
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: PP1S179_15V6.1 (Physcomitrella patens), 5'ss of exon 1
lower sequence: LOC_Os12g21798.1 (Oryza sativa), 5'ss of exon 1
CCCTGCCTCCC-ACTGCTGCCGCTGCTCCGTCCTCCGCAACAATGGCGGTCGGCAAGAACAAGCGGATTTCCAAGGGAAAGAAGGGTGGCAAGAAGAAAATgtacaccttccctaccttgccctccattacctccagtgccgcacttgtaggtttgtgttgcttccaaatgttccttgagcatttggtctaacatggagat-gtttgagtcttgtgcag
    ||| ||| |   |  |||  ||     |  |  || | ||||| |||||||||||||||||||| || ||||| ||||||||   ||||||||| | ||     | ||   ||   ||  ||    | |||         | | | | | |  |||||      |||   | || |  || | | |  | |   | | ||| |  | |  |||||
-GACGCCGCCCGAGCACCACCGGAGCAGGAGCAGCGTCAGCCATGGCCGTCGGCAAGAACAAGCGGATCTCGAAGGGGAAGAAGGGATCCAAGAAGAAGACgtgagtttacctctcccccccaccctcctcgtccgtccttcttcctttcgctcttggttgcc-----atggcgcatgggtgtt-gatgtggcttcctgctcgttcgtttttcttgcag

upper sequence: PP1S179_15V6.1 (Physcomitrella patens), 5'ss of exon 1
lower sequence: GRMZM2G030915_T01 (Zea mays), 5'ss of exon 1
--------------------------------------------------------------CCCTGCCTCC---CACTGCTGCCGCTGCTCCGTCCTCCGCAACAATGGCGGTCGGCAAGAACAAGCGGATTTCCAAGGGAAAGAAGGGTGGCAAGAAGAAAATgtacaccttccctacct--tgccctccattacctccagtgccgcacttgtaggtttgtgttgcttccaaatgttccttgagcatttggtctaacatggagatgtttgagtcttgtgcag
                                                              ||  | | ||   |||    || || ||  || |  | || || ||||| ||||| ||||||||| |||| |||||||||||||||||||||||||| || | ||  |  || | | |||  |     ||| | | ||                                                                                    
TAGTAGTCCGCTCTGCCTCCGAAGTGCTTTCTCCCGCAGAGCAGCCGACAACTCTCTACCGTCCGAGACCCCAAGCACCAGCGCGGCGGCGGCGgcggcggcgaccatggctgtcgggaagaacaagaggatctccaagggaaagaagggtggcaagaaaaagacgt-tagtttgcttgcctgttatatcccagttcttca-----------------------------------------------------------------------------------

upper sequence: PP1S179_15V6.1 (Physcomitrella patens), 5'ss of exon 1
lower sequence: GRMZM2G030915_T04 (Zea mays), 5'ss of exon 1
CCCTGCCTCCCACTGCTGCCGCTGCTCCGTCCTCCGCAACAATGGCGGTCGGCAAGAACAAGCGGATTTCCAAGGGAAAGAAGGGTGGCAAGAAGAAAATgtacaccttccctacct--tgccctccattacctccagtgccgcacttgtaggtttgtgttgcttccaaatgttccttgagcatttggtctaacatggagatgtttgagtcttgtgcag
     ||   |||    || || ||  || |  | || || ||||| ||||| ||||||||| |||| |||||||||||||||||||||||||| || | ||  |  || | | |||  |     ||| | | ||   |   ||    || | ||  | |   |    |    |   |||   | | || |      || |                  
AGACCCCAAGCACCAGCGCGGCGGCGGCGGCGGCGGCGACCATGGCTGTCGGGAAGAACAAGAGGATCTCCAAGGGAAAGAAGGGTGGCAAGAAAAAGACgt-tagtttgcttgcctgttatatcccagttcttcagatctagcttgggtcgattgctttctttctttatccgttgctgatgctgttgtgtggttgcgata------------------

upper sequence: PP1S179_15V6.1 (Physcomitrella patens), 5'ss of exon 1
lower sequence: GRMZM2G030915_T08 (Zea mays), 5'ss of exon 1
CCCTGCCTCCCACTGCTGCCGCTGCTCCGTCCTCCGCAACAATGGCGGTCGGCAAGAACAAGCGGATTTCCAAGGGAAAGAAGGGTGGCAAGAAGAAAATgtacaccttccctacct--tgccctccattacctccagtgccgcacttgtaggtttgtgttgcttccaaatgttccttgagcatttggtctaacatggagatgtt-tgagtcttgtgcag
  | | |    ||  |   | |     || |  | || || ||||| ||||| ||||||||| |||| |||||||||||||||||||||||||| || | ||  |  || | | |||  |     ||| | | ||   |    |    || | || |  ||  |||    | | | |||   ||  |||    | |||    |||     | || |||||
TACCGTCCGATACCCCAAGCACCAGCGCGGCGGCGGCGACCATGGCTGTCGGAAAGAACAAGAGGATCTCCAAGGGAAAGAAGGGTGGCAAGAAAAAGACgt-tagtttgcttgcctgttatatcccagttcttcagatcttacttgggtcgatt-gctttctttctt--tatccgttgctgatgcggtt--gcgtggttgcgttacttcttttatgcag

upper sequence: PP1S179_15V6.1 (Physcomitrella patens), 5'ss of exon 1
lower sequence: GRMZM2G030915_T01 (Zea mays), 5'ss of exon 2
CCCTGCCTCCCACTGCTGCCGCTGCTCCGTCCTCCGCAACAATGGCGGTCGGCAAGAACAAGCGGATTTCCAAGGGAAAGAAGGGTGGCAAGAAGAAAATgtacaccttccctacct--tgccctccattacctccagtgccgcacttgtaggtttgtgttgcttccaaatgttccttgagcatttggtctaacatggagatgtt-tgagtcttgtgcag
                              |  | || || ||||| ||||| ||||||||| |||| |||||||||||||||||||||||||| || | ||  |  || | | |||  |     ||| | | ||   |    |    || | || |  ||  |||    | | | |||   ||  |||    | |||    |||     | || |||||
-----------------------------GCGGCGGCGACCATGGCTGTCGGAAAGAACAAGAGGATCTCCAAGGGAAAGAAGGGTGGCAAGAAAAAGACgt-tagtttgcttgcctgttatatcccagttcttcagatcttacttgggtcgatt-gctttctttctt--tatccgttgctgatgcggtt--gcgtggttgcgttacttcttttatgcag

upper sequence: PP1S179_15V6.1 (Physcomitrella patens), 5'ss of exon 1
lower sequence: GRMZM2G030915_T03 (Zea mays), 5'ss of exon 1
CCCTGCCTCCCACTGCTGCCGCTGCTCCGTCCTCCGCAACAATGGCGGTCGGCAAGAACAAGCGGATTTCCAAGGGAAAGAAGGGTGGCAAGAAGAAAATgtacaccttccctacct--tgccctccattacctccagtgccgcacttgtaggtttgtgttgcttccaaatgttccttgagcat-ttggtctaacatggagatgtttgagtcttgtgcag
     ||   |||    || || ||  || |  | || || ||||| ||||| ||||||||| |||| |||||||||||||||||||||||||| || | ||  |  || | | |||  |     ||| | | ||   |   ||    || | || |  ||  |||    | | | |||   ||  || | |    | | |||  ||   | || |||||
AGACCCCAAGCACCAGCGCGGCGGCGGCGGCGGCGGCGACCATGGCTGTCGGGAAGAACAAGAGGATCTCCAAGGGAAAGAAGGGTGGCAAGAAAAAGACgt-tagtttgcttgcctgttatatcccagttcttcagatctagcttgggtcgatt-gctttctttctt--tatccgttgctgatgctgttgtgtggttgcgatacttc--ttttatgcag

upper sequence: PP1S179_15V6.1 (Physcomitrella patens), 5'ss of exon 1
lower sequence: GRMZM2G145258_T01 (Zea mays), 5'ss of exon 1
CCCTGCCTCCCACTGCTGCCGCTGCTCCGTCCTCCGCAACAATGGCGGTCGGCAAGAACAAGCGGATTTCCAAGGGAAAGAAGGGTGGCAAGAAGAAAATgtacaccttccctacct--tgccctccattacctccagtgccgcacttgtaggtttgtgttgcttccaaatgttccttgagcatttggtctaacatggagatgtttgagt-cttgtgcag
     ||   |||    || || ||   | |  | || || ||||| ||||| ||||||||| |||| |||||||||||||||||||||||||| || | ||  |  || | | |||  |     ||| | | ||   |   ||   ||| | ||  | ||  |      | | | |||   ||  |||      |||    |||  |    || |||||
AGACCCCAAGCACCAGCGCGGCGGCGGGGGCGGCGGCGACCATGGCTGTCGGAAAGAACAAGAGGATCTCCAAGGGAAAGAAGGGTGGCAAGAAAAAGACgt-tagtttgcttgcctgttatatcccagttcttcagatcttgcttgtgtcgattgctttttttctt---tatccgttgctgatgcggttc--tgtggttgcgttacatcatttatgcag

upper sequence: PP1S179_15V6.1 (Physcomitrella patens), 5'ss of exon 1
lower sequence: GRMZM2G013457_T01 (Zea mays), 5'ss of exon 1
--CCCTGCCTCCCACTGCTGCCGCTGCTCCGTCCTCCGCAACAATGGCGGTCGGCAAGAACAAGCGGATTTCCAAGGGAAAGAAGGGTGGCAAGAAGAAAATgtacaccttccctaccttgccctccattacctccagtgccgcacttgtaggtttgtgttgcttccaaatgttccttgagcatttggtctaacatg-gagatgtttgagtcttgtgcag
    |||   ||||      |||  ||  || |  | || || ||||| ||||| ||||||||| |||| |||||||||||||||||||| ||||| || | ||| |  || | | | |   | |||  | | ||      |   || |     |||  | | |||   |  |||  ||   ||  |||      |  | | |  ||  |||||      
TAGTCTGTACCCCA--AGCACCGGCGCGGCGGCGGCGGCTACCATGGCAGTCGGGAAGAACAAGAGGATCTCCAAGGGAAAGAAGGGTGGTAAGAAAAAGACgta-agtttgcttgcatgttcttcccgttcttc--acatctatctcggtcaattgcttcgtttctggagcttc--tgctgatgcggttgtgtgtctgtgttccttttgtcttacag--

upper sequence: PP1S179_15V6.1 (Physcomitrella patens), 5'ss of exon 1
lower sequence: GLYMA11G00890.1 (Glycine max), 5'ss of exon 1
CCCTGCCTCCCACTGCTGCCG--CTGCTCCGTCCTCCGCAACAATGGCGGTCGGCAAGAACAAGCGGATTTCCAAGGGAAAGAAGGGTGGCAAGAAGAAAATgtacaccttccctaccttgccctccattacctccagtgccgcacttgtaggtttgtgttgcttccaaatgttccttgagcatttggtctaacatggagatgtttgagtcttgtgcag
  | ||| |    ||   | |  | |  |   | |    | | ||||| ||||| ||||| ||| |||||||||||||||||||||||||||||||||||  ||       |  | ||||   || || |  ||    | |    |||  |  | ||  ||  |||    | |||| |||       |                               
--CAGCCGCAGCTTGAAACAGAGCAGAGCGACCTTGAAGAGCTATGGCTGTCGGAAAGAATAAGAGGATTTCCAAGGGAAAGAAGGGTGGCAAGAAGAAAGCgttagtgcccattccctt---cttcact--cttttattctctcctttaaactctgatttctttcttcttcttccgtgattccacag-------------------------------

upper sequence: PP1S179_15V6.1 (Physcomitrella patens), 5'ss of exon 1
lower sequence: GLYMA01G44700.1 (Glycine max), 5'ss of exon 1
CCCTGCCTCCCACTGCTGCCG--CTGCTCCGTCCTCCGCAACAATGGCGGTCGGCAAGAACAAGCGGATTTCCAAGGGAAAGAAGGGTGGCAAGAAGAAAATgtacaccttccctaccttgccctccattacctccagtgccgcacttgtaggtttgtgttgcttccaaatgttccttgagcatttggtctaacatggagatgtttgagtcttgtgcag
  | ||| | |  || | | |  | |  |   | |    | | ||||| ||||| ||||| ||| |||||||||||||||||||||||||||||||||||  ||  |    || | |  | | ||   ||   |    |     | || ||   | || ||   ||||  |   |  |||   |||| |    | |     |   ||| ||    |   
--CAGCCGCACCTTGATTCAGAGCAGAGCGACCTTGAAGAGCTATGGCTGTCGGAAAGAATAAGAGGATTTCCAAGGGAAAGAAGGGTGGCAAGAAGAAAGCgt-tagtgcccattctcttcacttttttttttttttttttttatttctattgtcgtatt--ctccattttaactctga---tttgtttcttcttcttcttccgtgaatccacag---

upper sequence: PP1S179_15V6.1 (Physcomitrella patens), 5'ss of exon 1
lower sequence: GLYMA10G39050.1 (Glycine max), 5'ss of exon 1
CCCTGCCTCCCACTGCTGCCGCT-GCTCCGTCCTCCGC-AACAATGGCGGTCGGCAAGAACAAGCGGATTTCCAAGGGAAAGAAGGGTGGCAAGAAGAAAATgtacaccttccctaccttgccctccattacctccagtgccgcacttgtaggtttgtgttgcttccaaatgttccttga-gcatttggtctaacatggagatgtttgagtcttgtgcag
      |  |  |||||     | || |||    | |  | | ||||| ||||| ||||||||||| || |||||||| ||||||||||||||||||||   ||     |   | |  |      || ||  |||   ||    | ||||   ||||  ||       ||  |||  ||| |  |||||| |    ||   ||||               
--TCATCCGCAGCTGCTTTTATTCGCACCGCAAACAGTGAGCCATGGCCGTCGGAAAGAACAAGCGCATCTCCAAGGGGAAGAAGGGTGGCAAGAAGAAGGCgttagtatcttccatttcttttccccttttctc---tgttttatttgtgtttttgctttaacattcaaaattcaatgacgtgtttggtttg-tgtgtgaatgtgcag-----------

upper sequence: PP1S179_15V6.1 (Physcomitrella patens), 5'ss of exon 1
lower sequence: GLYMA06G11940.1 (Glycine max), 5'ss of exon 1
CCCTGCCTCCCACTGCTGCCGCTGCTCCGTCCTCCGCAACAATGGCGGTCGGCAAGAACAAGCGGATTTCCAAGGGAAAGAAGGGTGGCAAGAAGAAAATgtacaccttccctacctt-gccctcca--ttacctccagtgccgcacttgtaggtttgtgttgcttccaaatgttccttgagcatttggtctaacatggagatgtttgagtcttgtgcag
                                         ||||| ||||| ||||||||| ||||||| ||||  ||||||| ||||||||||||   ||     | |  | | ||  |  |  |  ||  ||    || | ||  | |    ||    |   |     | |||||    || |                                  
-----------------------------------------ATGGCCGTCGGAAAGAACAAGAGGATTTCTAAGGCCAAGAAGGTTGGCAAGAAGAAGGCgttagtgtccattgctttcactttttaacttttcttttttgtcacatctttcatctttaactctcttttcttcttcctccgtcaatctacag----------------------------

upper sequence: PP1S179_15V6.1 (Physcomitrella patens), 5'ss of exon 1
lower sequence: GLYMA20G28780.3 (Glycine max), 5'ss of exon 1
CCCTGCCTCCCACTGCTGCCGCTGCTCCGTCCTCCGCAACAATGGCGGTCGGCAAGAACAAGCGGATTTCCAAGGGAAAGAAGGGTGGCAAGAAGAAAATgtacaccttccctaccttgccctccattacctccagtgccgcacttgtaggtttgtgttgcttccaaatgttccttgagcatttggtctaacatggagatgtttgagtcttgtgcag
||    || |   |  |  | | ||            | | ||||| ||||| ||||||||||| || ||||| || || |||||||||||||||||   ||     |   |    |      || ||   ||   ||   || ||||   |||| |||       ||  |||  ||    | | |  |    |    ||||               
CCGCAGCTGCTGTTATTCGCACCGCAAACAAACAGTGAGCCATGGCCGTCGGAAAGAACAAGCGCATCTCCAAAGGGAAAAAGGGTGGCAAGAAGAAGGCgttagtatcttccgtttctattcccctttattc---tgtttcatttgtgtttttgcgttatcattcaaaattcagtggttttgttggtttttgtatgaatgtgcag-----------

upper sequence: PP1S179_15V6.1 (Physcomitrella patens), 5'ss of exon 1
lower sequence: Vv05s0020g03900.t01 (Vitis vinifera), 5'ss of exon 2
CCCTGCCTCCCACTGCTGCCGCTGCTCCGTCCTCCGCAACAATGGCGGTCGGCAAGAACAAGCGGATTTCCAAGGGAAAGAAGGGTGGCAAGAAGAAAATgtacaccttccctaccttgccctccattacctccagtgccgcacttgtaggtttgtgttgcttccaaatgttccttgagcatttggtctaacatggagatgtttgagtcttgtgcag
                                                     ||||||||| |||||||||||||||| ||||| |||||||||||   ||     | |  || |    | |  || |  |   |    |  ||| |    || ||||||||    || || | |    || |  || ||    |                     
----------------------------------------------------GAAGAACAAGAGGATTTCCAAGGGAAAAAAGGGAGGCAAGAAGAAGGCgtgag--tgcaatatcacaactta-atcaaattttgaattggccttatcaacttctgttgctt---gatttttcatcctgatataatc-aatgcag---------------------

upper sequence: PP1S179_15V6.1 (Physcomitrella patens), 5'ss of exon 1
lower sequence: EDP08964 (Chlamydomonas reinhardtii), 5'ss of exon 1
CCCTGCCTCCCACTGCTGCCGCTGCTCCGTCCTCCGCAACAATGGCGGTCGGCAAGAACAAGCGGATTTCCAAGGGAAAGAAGGGTGGCAAGAAGAAAATgtacaccttccctaccttgccctccattacctccagtgccgcacttgtaggtt-tgtgttgcttccaaatgttccttgagcatttggtctaacatggagatgtttgagtcttgtgcag
            | || |    |   |   |    ||||| ||||| ||||||||||||||||| ||   |||||| |||||||| |||||||||||   |||   |  ||  | ||   |  ||   ||| |||    ||| |   | | |  | |  |||   ||                                                   
------------CAGCCGTTTGTTGACTACCGGTAGCAACCATGGCTGTCGGCAAGAACAAGCGCATCAGCAAGGGGAAGAAGGGAGGCAAGAAGAAGGCgtaagtcggcc--atctctgcgcccgcgacccccacc-tcgctcacctggctcgttttctgcgcgcag--------------------------------------------------

upper sequence: PP1S179_15V6.1 (Physcomitrella patens), 5'ss of exon 1
lower sequence: EFJ09763 (Selaginella moellendorffii), 5'ss of exon 2
CCCTGCCTCCCACTGCTGCCGCTGCTCCGTCCTCCGCAACAATGGCGGTCGGCAAGAACAAGCGGATTTCCAAGGGAAAGAAGGGTGGCAAGAAGAAAATgtacaccttccctaccttgccctccattacctccagtgccgcacttgtaggtttgtgttgcttccaaatgttccttgagcatttggtctaacatggagatgtttgagtcttgtgcag
                                                     |||||||||||||||||||||||||||||||| |||||||||||||||||    ||     |   ||  |       ||  | | |  |  |  |  |                                                                  
----------------------------------------------------GAAGAACAAGCGGATTTCCAAGGGAAAGAAGGGAGGCAAGAAGAAAATgtaagtgtttg--gcgcagcgttttgcctgcttgatttcttctttcctcag------------------------------------------------------------------

upper sequence: PP1S179_15V6.1 (Physcomitrella patens), 5'ss of exon 1
lower sequence: EFJ11647 (Selaginella moellendorffii), 5'ss of exon 2
CCCTGCCTCCCACTGCTGCCGCTGCTCCGTCCTCCGCAACAATGGCGGTCGGCAAGAACAAGCGGATTTCCAAGGGAAAGAAGGGTGGCAAGAAGAAAATgtacaccttccctaccttgccctccattacctccagtgccgcacttgtaggtttgtgttgcttccaaatgttccttgagcatttggtctaacatggagatgtttgagtcttgtgcag
                                                     ||||||||||||||||||||||||||||| || |||||||||||||||||    ||     |   |   | | |    |  | |||   | ||      || ||| | |                                                       
----------------------------------------------------GAAGAACAAGCGGATTTCCAAGGGAAAGAAAGGAGGCAAGAAGAAAATgtaagtgtttggcgcagcgttttgcttcgattttattgcttgattt-----cttctgtcgttag-----------------------------------------------------

upper sequence: PP1S179_15V6.1 (Physcomitrella patens), 5'ss of exon 1
lower sequence: EFJ09804 (Selaginella moellendorffii), 5'ss of exon 2
CCCTGCCTCCCACTGCTGCCGCTGCTCCGTCCTCCGCAACAATGGCGGTCGGCAAGAACAAGCGGATTTCCAAGGGAAAGAAGGGTGGCAAGAAGAAAATgtacaccttccctaccttgccctccattacctccagtgccgcacttgtaggtttgtgttgcttccaaatgttccttgagcatttggtctaacatggagatgtttgagtcttgtgcag
                                                     |||||||||||||||||||||||||||||||| |||||||||||||||||    || |   |   |   | | |    |  | |||   | ||      || ||| | |                                                       
----------------------------------------------------GAAGAACAAGCGGATTTCCAAGGGAAAGAAGGGAGGCAAGAAGAAAATgtaagtgtttcgcgcagcgttttgcttcgattttattgcttgattt-----cttctgtcgttag-----------------------------------------------------

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|18350887|gb|BJ182938.1|BJ182938
EST:     GGCAAGAACAAGCGGATTTCCAAGGGAAAGAAGGGTGGCAAGAAGAAAAT                         CGTCGATCCTTTCTCCAAGAAGGATTGGTATGACATCAAGGCTCCTAACAC
genomic: GGCAAGAACAAGCGGATTTCCAAGGGAAAGAAGGGTGGCAAGAAGAAAATgtacaccttc ... tcttgtgcagCGTCGATCCTTTCTCCAAGAAGGATTGGTATGACATCAAGGCTCCTAACAC
EST: gi|67570638|gb|BJ943462.1|BJ943462
EST:     GGCAAGAACAAGCGGATTTCCAAGGGAAAGAAGGGTGGCAAGAAGAAAAT                         CGTCGATCCTTTCTCCAAGAAGGATTGGTATGACATCAAGGCTCCTAACAC
genomic: GGCAAGAACAAGCGGATTTCCAAGGGAAAGAAGGGTGGCAAGAAGAAAATgtacaccttc ... tcttgtgcagCGTCGATCCTTTCTCCAAGAAGGATTGGTATGACATCAAGGCTCCTAACAC
EST: gi|162265201|gb|FC441288.1|FC441288
EST:     GGCAAGAACAAGCGGATTTCCAAGGGAAAGAAGGGTGGCAAGAAGAAAAT                         CGTCGATCCTTTCTCCAAGAAGGATTGGTATGACATCAAGGCTCCTAACAC
genomic: GGCAAGAACAAGCGGATTTCCAAGGGAAAGAAGGGTGGCAAGAAGAAAATgtacaccttc ... tcttgtgcagCGTCGATCCTTTCTCCAAGAAGGATTGGTATGACATCAAGGCTCCTAACAC
EST: gi|162179846|gb|FC355917.1|FC355917
EST:     GGCAAGAACAAGCGGATTTCCAAGGGAAAGAAGGGTGGCAAGAAGAAAAT                         CGTCGATCCTTTCTCCAAGAAGGATTGGTATGACATCAAGGCTCCTAACAC
genomic: GGCAAGAACAAGCGGATTTCCAAGGGAAAGAAGGGTGGCAAGAAGAAAATgtacaccttc ... tcttgtgcagCGTCGATCCTTTCTCCAAGAAGGATTGGTATGACATCAAGGCTCCTAACAC
EST: gi|100411025|gb|BY956290.1|BY956290
EST:     GGCAAGAACAAGCGGATTTCCAAGGGAAAGAAGGGTGGCAAGAAGAAAAT                         CGTCGATCCTTTCTCCAAGAAGGATTGGTATGACATCAAGGCTCCTAACAC
genomic: GGCAAGAACAAGCGGATTTCCAAGGGAAAGAAGGGTGGCAAGAAGAAAATgtacaccttc ... tcttgtgcagCGTCGATCCTTTCTCCAAGAAGGATTGGTATGACATCAAGGCTCCTAACAC
EST: gi|162201610|gb|FC378272.1|FC378272
EST:     GGCAAGAACAAGCGGATTTCCAAGGGAAAGAAGGGTGGCAAGAAGAAAAT                         CGTCGATCCTTTCTCCAAGAAGGATTGGTATGACATCAAGGCTCCTAACAC
genomic: GGCAAGAACAAGCGGATTTCCAAGGGAAAGAAGGGTGGCAAGAAGAAAATgtacaccttc ... tcttgtgcagCGTCGATCCTTTCTCCAAGAAGGATTGGTATGACATCAAGGCTCCTAACAC
EST: gi|67701626|gb|BJ961859.1|BJ961859
EST:     GGCAAGAACAAGCGGATTTCCAAGGGAAAGAAGGGTGGCAAGAAGAAAAT                         CGTCGATCCTTTCTCCAAGAAGGATTGGTATGACATCAAGGCTCCTAACAC
genomic: GGCAAGAACAAGCGGATTTCCAAGGGAAAGAAGGGTGGCAAGAAGAAAATgtacaccttc ... tcttgtgcagCGTCGATCCTTTCTCCAAGAAGGATTGGTATGACATCAAGGCTCCTAACAC
EST: gi|162194938|gb|FC370563.1|FC370563
EST:     GCGGATTTCCAAGGGAAAGAAGGGTGGCAAGAAGAAAAT                         CGTCGATCCTTTCTCCAAGAAGGATTGGTATGACATCAAGGCTCCTAACAC
genomic: GCGGATTTCCAAGGGAAAGAAGGGTGGCAAGAAGAAAATgtacaccttc ... tcttgtgcagCGTCGATCCTTTCTCCAAGAAGGATTGGTATGACATCAAGGCTCCTAACAC
EST: gi|67704259|gb|BJ964492.1|BJ964492
EST:     GGCAAGAACAAGCGGATTTCCAAGGGAAAGAAGGGTGGCAAGAAGAAAAT                         CGTCGATCCTTTCTCCAAGAAGGATTGGTATGACATCAAGGCTCCTAACAC
genomic: GGCAAGAACAAGCGGATTTCCAAGGGAAAGAAGGGTGGCAAGAAGAAAATgtacaccttc ... tcttgtgcagCGTCGATCCTTTCTCCAAGAAGGATTGGTATGACATCAAGGCTCCTAACAC
EST: gi|208383029|gb|DC927779.1|DC927779
EST:     GGCAAGANCAAGCGGATTTCCAAGGGAAAGAAGGGTGGCAAGAAGAAAAT                         CGTCGATCCTTTCTCCAAGAAGGATTGGTATGACATCAAGGCTCCTAACAC
genomic: GGCAAGAACAAGCGGATTTCCAAGGGAAAGAAGGGTGGCAAGAAGAAAATgtacaccttc ... tcttgtgcagCGTCGATCCTTTCTCCAAGAAGGATTGGTATGACATCAAGGCTCCTAACAC
EST: gi|208392444|gb|DC907921.1|DC907921
EST:     GGCAAGAACAAGCGGATTTCCAAGGGAAAGAAGGGTGGCAAGAAGAAAAT                         CGTCGATCCTTTCTCCAAGAAGGATTGGTATGACATCAAGGCTCCTAACAC
genomic: GGCAAGAACAAGCGGATTTCCAAGGGAAAGAAGGGTGGCAAGAAGAAAATgtacaccttc ... tcttgtgcagCGTCGATCCTTTCTCCAAGAAGGATTGGTATGACATCAAGGCTCCTAACAC
EST: gi|162257380|gb|FC433463.1|FC433463
EST:     GGCAAGAACAAGCGGATTTCCAAGGGAAAGAAGGGTGGCAAGAAGAAAAT                         CGTCGATCCTTTCTCCAAGAAGGATTGGTATGACATCAAGGCTCCTAACAC
genomic: GGCAAGAACAAGCGGATTTCCAAGGGAAAGAAGGGTGGCAAGAAGAAAATgtacaccttc ... tcttgtgcagCGTCGATCCTTTCTCCAAGAAGGATTGGTATGACATCAAGGCTCCTAACAC
EST: gi|18352273|gb|BJ184327.1|BJ184327
EST:     GGCAAGAACAAGCGGATTTCCAAGGGAAAGAAGGGTGGCAAGAAGAAAAT                         CGTCGATCCTTTCTCCAAGAAGGATTGGTATGACATCAAGGCTCCTAACAC
genomic: GGCAAGAACAAGCGGATTTCCAAGGGAAAGAAGGGTGGCAAGAAGAAAATgtacaccttc ... tcttgtgcagCGTCGATCCTTTCTCCAAGAAGGATTGGTATGACATCAAGGCTCCTAACAC
EST: gi|18358143|gb|BJ190202.1|BJ190202
EST:     GGCAAGAACAAGCGGATTTCCAAGGGAAAGAAGGGTGGCAAGAAGAAAAT                         CGTCGATCCTTTCTCCAAGAAGGATTGGTATGACATCAAGGCTCCTAACAC
genomic: GGCAAGAACAAGCGGATTTCCAAGGGAAAGAAGGGTGGCAAGAAGAAAATgtacaccttc ... tcttgtgcagCGTCGATCCTTTCTCCAAGAAGGATTGGTATGACATCAAGGCTCCTAACAC
EST: gi|18344089|gb|BJ176128.1|BJ176128
EST:     GGNAAGAACAAGCGGATTTCCAAGGGAAAGAAGGGTGGNAAGAAGAAAAT                         CGTCGATCCTTTCTCCAAGAAGGATTGGTATGACATCAAGGCTCCTAACAC
genomic: GGCAAGAACAAGCGGATTTCCAAGGGAAAGAAGGGTGGCAAGAAGAAAATgtacaccttc ... tcttgtgcagCGTCGATCCTTTCTCCAAGAAGGATTGGTATGACATCAAGGCTCCTAACAC
EST: gi|162241951|gb|FC414436.1|FC414436
EST:     GGCAAGAACAAGCGGATTTCCAAGGGAAAGAAGGGTGGCAAGAAGAAAAT                         CGTCGATCCTTTCTCCAAGAAGGATTGGTATGACATCAAGGCTCCTAACAC
genomic: GGCAAGAACAAGCGGATTTCCAAGGGAAAGAAGGGTGGCAAGAAGAAAATgtacaccttc ... tcttgtgcagCGTCGATCCTTTCTCCAAGAAGGATTGGTATGACATCAAGGCTCCTAACAC
EST: gi|162273088|gb|FC447782.1|FC447782
EST:     GGCAAGAACAAGCGGATTTCCAAGGGAAAGAAGGGTGGCAAGAAGAAAAT                         CGTCGATCCTTTCTCCAAGAAGGATTGGTATGACATCAAGGCTCCTAACAC
genomic: GGCAAGAACAAGCGGATTTCCAAGGGAAAGAAGGGTGGCAAGAAGAAAATgtacaccttc ... tcttgtgcagCGTCGATCCTTTCTCCAAGAAGGATTGGTATGACATCAAGGCTCCTAACAC
EST: gi|7147783|gb|AW509705.1|AW509705
EST:     AAGAAGGGTGGCAAGAAGAAAAT                         CGTCGATCCTTTCTCCAAGAAGGATTGGTATGACATCAAGGCTCCTAACAC
genomic: AAGAAGGGTGGCAAGAAGAAAATgtacaccttc ... tcttgtgcagCGTCGATCCTTTCTCCAAGAAGGATTGGTATGACATCAAGGCTCCTAACAC
EST: gi|18346258|gb|BJ178301.1|BJ178301
EST:     GGCAAGAACAAGCGGATTTCCAAGGGAAAGAAGGGTGGCAAGAAGAAAAT                         CGTCGATCCTTTCTCCAAGAAGGATTGGTATGACATCAAGGCTCCTAACAC
genomic: GGCAAGAACAAGCGGATTTCCAAGGGAAAGAAGGGTGGCAAGAAGAAAATgtacaccttc ... tcttgtgcagCGTCGATCCTTTCTCCAAGAAGGATTGGTATGACATCAAGGCTCCTAACAC
EST: gi|18359206|gb|BJ191266.1|BJ191266
EST:     GGCAAGAACAAGCGGATTTCCAAGGGAAAGAAGGGTGGCAAGAAGAAAAT                         CGTCGATCCTTTCT-CAAGAAGGATTGGTATGACATCAAGGCTCCTAACAC
genomic: GGCAAGAACAAGCGGATTTCCAAGGGAAAGAAGGGTGGCAAGAAGAAAATgtacaccttc ... tcttgtgcagCGTCGATCCTTTCTCCAAGAAGGATTGGTATGACATCAAGGCTCCTAACAC
EST: gi|18329862|gb|BJ161868.1|BJ161868
EST:     GGCAAGAACAAGCGGATTTCCAAGGGAAAGAAGGGTGGCAAGAAGAAAAT                         CGTCGATCCTTTCTCCAAGAAGGATTGGTATGACATCAAGGCTCCTAACAC
genomic: GGCAAGAACAAGCGGATTTCCAAGGGAAAGAAGGGTGGCAAGAAGAAAATgtacaccttc ... tcttgtgcagCGTCGATCCTTTCTCCAAGAAGGATTGGTATGACATCAAGGCTCCTAACAC
EST: gi|162243528|gb|FC421779.1|FC421779
EST:     GGCAAGAACAAGCGGATTTCCAAGGGAAAGAAGGGTGGCAAGAAGAAAAT                         CGTCGATCCTTTCTCCAAGAAGGATTGGTATGACATCAAGGCTCCTAACAC
genomic: GGCAAGAACAAGCGGATTTCCAAGGGAAAGAAGGGTGGCAAGAAGAAAATgtacaccttc ... tcttgtgcagCGTCGATCCTTTCTCCAAGAAGGATTGGTATGACATCAAGGCTCCTAACAC
EST: gi|18367849|gb|BJ199932.1|BJ199932
EST:     GGCAAGAACAAGCGGATTTCCAAGGGAAAGAAGGGTGGCAAGAAGAAAAT                         CGTCGATCCTTTCTCCAAGAAGGATTGGTATGACATCAAGGCTCCTAACAC
genomic: GGCAAGAACAAGCGGATTTCCAAGGGAAAGAAGGGTGGCAAGAAGAAAATgtacaccttc ... tcttgtgcagCGTCGATCCTTTCTCCAAGAAGGATTGGTATGACATCAAGGCTCCTAACAC
EST: gi|100388710|gb|BY970858.1|BY970858
EST:     GGCAAGAACAAGCGGATTTCCAAGGGAAAGAGGGGTGGCAAGAAGAAAAT                         CGTCGATCCTTTCTCCAAGAAGGATTGGTATGACATCAAGGCTCCTAACAC
genomic: GGCAAGAACAAGCGGATTTCCAAGGGAAAGAAGGGTGGCAAGAAGAAAATgtacaccttc ... tcttgtgcagCGTCGATCCTTTCTCCAAGAAGGATTGGTATGACATCAAGGCTCCTAACAC
EST: gi|18324752|gb|BJ156747.1|BJ156747
EST:     GGCAAGAACAAGCGGATTTCCAAGGGAAAGAAGGGTGGCAAGAAGAAAAT                         CGTCGATCCTTTCTCCAAGAAGGATTGGTATGACATCAAGGCTCCTAACAC
genomic: GGCAAGAACAAGCGGATTTCCAAGGGAAAGAAGGGTGGCAAGAAGAAAATgtacaccttc ... tcttgtgcagCGTCGATCCTTTCTCCAAGAAGGATTGGTATGACATCAAGGCTCCTAACAC
EST: gi|18352049|gb|BJ184102.1|BJ184102
EST:     GGCAAGAACAAGCGGATTTCCAAGGGAAAGAAGGGTGGCAAGAAGAAAAT                         CGTCGATCCTTTCTCCAAGAAGGATTGGTATGACATCAAGGCTCCTAACAC
genomic: GGCAAGAACAAGCGGATTTCCAAGGGAAAGAAGGGTGGCAAGAAGAAAATgtacaccttc ... tcttgtgcagCGTCGATCCTTTCTCCAAGAAGGATTGGTATGACATCAAGGCTCCTAACAC
EST: gi|162261030|gb|FC436917.1|FC436917
EST:     GGCAAGAACAAGCGGATTTCCAAGGGAAAGAAGGGTGGCAAGAAGAAAAT                         CGTCGATCCTTTCTCCAAGAAGGATTGGTATGACATCAAGGCTCCTAACAC
genomic: GGCAAGAACAAGCGGATTTCCAAGGGAAAGAAGGGTGGCAAGAAGAAAATgtacaccttc ... tcttgtgcagCGTCGATCCTTTCTCCAAGAAGGATTGGTATGACATCAAGGCTCCTAACAC
EST: gi|162220665|gb|FC396877.1|FC396877
EST:     GGCAAGAACAAGCGGATTTCCAAGGGAAAGAAGGGTGGCAAGAAGAAAAT                         CGTCGATCCTTTCTCCAAGAAGGATTGGTATGACATCAAGGCTCCTAACAC
genomic: GGCAAGAACAAGCGGATTTCCAAGGGAAAGAAGGGTGGCAAGAAGAAAATgtacaccttc ... tcttgtgcagCGTCGATCCTTTCTCCAAGAAGGATTGGTATGACATCAAGGCTCCTAACAC
EST: gi|67704432|gb|BJ964665.1|BJ964665
EST:     GGCAAGAACAAGCGGATTTCCAAGGGAAAGAAGGGTGGCAAGAAGAAAAT                         CGTCGATCCTTTCTCCAAGAAGGATTGGTATGACATCAAGGCTCCTAACAC
genomic: GGCAAGAACAAGCGGATTTCCAAGGGAAAGAAGGGTGGCAAGAAGAAAATgtacaccttc ... tcttgtgcagCGTCGATCCTTTCTCCAAGAAGGATTGGTATGACATCAAGGCTCCTAACAC
EST: gi|162232845|gb|FC407498.1|FC407498
EST:     GGCAAGAACAAGCGGATTTCCAAGGGAAAGAAGGGTGGCAAGAAGAAAAT                         CGTCGATCCTTTCTCCAAGAAGGATTGGTATGACATCAAGGCTCCTAACAC
genomic: GGCAAGAACAAGCGGATTTCCAAGGGAAAGAAGGGTGGCAAGAAGAAAATgtacaccttc ... tcttgtgcagCGTCGATCCTTTCTCCAAGAAGGATTGGTATGACATCAAGGCTCCTAACAC
EST: gi|18327940|gb|BJ159944.1|BJ159944
EST:     GGCAAGAACAAGCGGATTTCCAAGGGAAAGAAGGGTGGCAAGAAGAAAAT                         CGTCGATCCTTTCTCCAAGAAGGATTGGTATGACATCAAGGCTCCTAACAC
genomic: GGCAAGAACAAGCGGATTTCCAAGGGAAAGAAGGGTGGCAAGAAGAAAATgtacaccttc ... tcttgtgcagCGTCGATCCTTTCTCCAAGAAGGATTGGTATGACATCAAGGCTCCTAACAC
EST: gi|162270512|gb|FC447607.1|FC447607
EST:     GGCAAGAACAAGCGGATTTCCAAGGGAAAGAAGGGTGGCAAGAAGAAAAT                         CGTCGATCCTTTCTCCAAGAAGGATTGGTATGACATCAAGGCTCCTAACAC
genomic: GGCAAGAACAAGCGGATTTCCAAGGGAAAGAAGGGTGGCAAGAAGAAAATgtacaccttc ... tcttgtgcagCGTCGATCCTTTCTCCAAGAAGGATTGGTATGACATCAAGGCTCCTAACAC
EST: gi|67717387|gb|BJ967646.1|BJ967646
EST:     GGCAAGAACAAGCGGATTTCCAAGGGAAAGAAGGGTGGCAAGAAGAAAAT                         CGTCGATCCTTTCTCCAAGAAGGATTGGTATGACATCAAGGCTCCTAACAC
genomic: GGCAAGAACAAGCGGATTTCCAAGGGAAAGAAGGGTGGCAAGAAGAAAATgtacaccttc ... tcttgtgcagCGTCGATCCTTTCTCCAAGAAGGATTGGTATGACATCAAGGCTCCTAACAC
EST: gi|18326343|gb|BJ158342.1|BJ158342
EST:     GGCAAGAACAAGCGGATTTCCAAGGGAAAGAAGGGTGGCAAGAAGAAAAT                         CGTCGATCCTTTCTCCAAGAAGGATTGGTATGACATCAAGGCTCCTAACAC
genomic: GGCAAGAACAAGCGGATTTCCAAGGGAAAGAAGGGTGGCAAGAAGAAAATgtacaccttc ... tcttgtgcagCGTCGATCCTTTCTCCAAGAAGGATTGGTATGACATCAAGGCTCCTAACAC
EST: gi|100360728|gb|BY965870.1|BY965870
EST:     GGCAAGAACAAGCGGATTTCCAAGGGAAAGAAGGGTGGCAAGAAGAAAAT                         CGTCGATCCTTTCTCCAAGAAGGATTGGTATGACATCAAGGCTCCTAACAC
genomic: GGCAAGAACAAGCGGATTTCCAAGGGAAAGAAGGGTGGCAAGAAGAAAATgtacaccttc ... tcttgtgcagCGTCGATCCTTTCTCCAAGAAGGATTGGTATGACATCAAGGCTCCTAACAC
EST: gi|162234738|gb|FC409250.1|FC409250
EST:     GGCAAGAACAAGCGGATTTCCAAGGGAAAGAAGGGTGGCAAGAAGAAAAT                         CGTCGATCCTTTCTCCAAGAAGGATTGGTATGACATCAAGGCTCCTAACAC
genomic: GGCAAGAACAAGCGGATTTCCAAGGGAAAGAAGGGTGGCAAGAAGAAAATgtacaccttc ... tcttgtgcagCGTCGATCCTTTCTCCAAGAAGGATTGGTATGACATCAAGGCTCCTAACAC
EST: gi|67704317|gb|BJ964550.1|BJ964550
EST:     GGCAAGAACAAGCGGATTTCCAAGGGAAAGAAGGGTGGCAAGAAGAAAAT                         CGTCGATCCTTTCTCCAAGAAGGATTGGTATGACATCAAGGCTCCTAACAC
genomic: GGCAAGAACAAGCGGATTTCCAAGGGAAAGAAGGGTGGCAAGAAGAAAATgtacaccttc ... tcttgtgcagCGTCGATCCTTTCTCCAAGAAGGATTGGTATGACATCAAGGCTCCTAACAC
EST: gi|67570441|gb|BJ943265.1|BJ943265
EST:     GGCAAGAACAAGCGGATTTCCAAGGGAAAGAAGGGTGGCAAGAAGAAAAT                         CGTCGATCCTTTCTCCAAGAAGGATTGGTATGACATCAAGGCTCCTAACAC
genomic: GGCAAGAACAAGCGGATTTCCAAGGGAAAGAAGGGTGGCAAGAAGAAAATgtacaccttc ... tcttgtgcagCGTCGATCCTTTCTCCAAGAAGGATTGGTATGACATCAAGGCTCCTAACAC
EST: gi|18343736|gb|BJ175774.1|BJ175774
EST:     GGCAAGAACAAGCGGATTTCCAAGGGAAAGAAGGGTGGCAAGAAGAAAAT                         CGTCGATCCTTTCTCCAAGAAGGATTGGTATGACATCAAGGCTCCTAACAC
genomic: GGCAAGAACAAGCGGATTTCCAAGGGAAAGAAGGGTGGCAAGAAGAAAATgtacaccttc ... tcttgtgcagCGTCGATCCTTTCTCCAAGAAGGATTGGTATGACATCAAGGCTCCTAACAC
EST: gi|162204867|gb|FC381497.1|FC381497
EST:     GGCAAGAACAAGCGGATTTCCAAGGGAAAGAAGGGTGGCAAGAAGAAAAT                         CGTCGATCCTTTCTCCAAGAAGGATTGGTATGACATCAAGGCTCCTAACAC
genomic: GGCAAGAACAAGCGGATTTCCAAGGGAAAGAAGGGTGGCAAGAAGAAAATgtacaccttc ... tcttgtgcagCGTCGATCCTTTCTCCAAGAAGGATTGGTATGACATCAAGGCTCCTAACAC
EST: gi|162259415|gb|FC436254.1|FC436254
EST:     GGCAAGAACAAGCGGATTTCCAAGGGAAAGAAGGGTGGCAAGAAGAAAAT                         CGTCGATCCTTTCTCCAAGAAGGATTGGTATGACATCAAGGCTCCTAACAC
genomic: GGCAAGAACAAGCGGATTTCCAAGGGAAAGAAGGGTGGCAAGAAGAAAATgtacaccttc ... tcttgtgcagCGTCGATCCTTTCTCCAAGAAGGATTGGTATGACATCAAGGCTCCTAACAC
EST: gi|18359520|gb|BJ191581.1|BJ191581
EST:     GGCAAGAACAAGCGGATTTCCAAGGGAAAGAAGGGTGGCAAGAAGAAAAT                         CGTCGATCCTTTCTCCAAGAAGGATTGGTATGACATCAAGGCTCCTAACAC
genomic: GGCAAGAACAAGCGGATTTCCAAGGGAAAGAAGGGTGGCAAGAAGAAAATgtacaccttc ... tcttgtgcagCGTCGATCCTTTCTCCAAGAAGGATTGGTATGACATCAAGGCTCCTAACAC
EST: gi|7047286|gb|AW477180.1|AW477180
EST:     GGCAAGAACAAGCGGATTTCCAAGGGAAAGAAGGGTGGCAAGAAGAAAAT                         CGTCGATCCTTTCTCCAAGAAGGATTGGTATGACATCAAGGCTCCTAACAC
genomic: GGCAAGAACAAGCGGATTTCCAAGGGAAAGAAGGGTGGCAAGAAGAAAATgtacaccttc ... tcttgtgcagCGTCGATCCTTTCTCCAAGAAGGATTGGTATGACATCAAGGCTCCTAACAC
EST: gi|19789007|gb|BQ041044.1|BQ041044
EST:     GGCAAGAACAAGCGGATTTCCAAGGGAAAGAAGGGTGGCAAGAAGAAAAT                         CGTCGATCCTTTCTCCAAGAAGGATTGGTATGACATCAAGGCTCCTAACAC
genomic: GGCAAGAACAAGCGGATTTCCAAGGGAAAGAAGGGTGGCAAGAAGAAAATgtacaccttc ... tcttgtgcagCGTCGATCCTTTCTCCAAGAAGGATTGGTATGACATCAAGGCTCCTAACAC
EST: gi|208384075|gb|DC911239.1|DC911239
EST:     GGCAAGATCAAGCGGATTTCCAAGGGAAAGAAGGGTGGCAAGAAGAAAAT                         CGTCGATCCTTTCTCCAAGAAGGATTGGTATGACATCAAGGCTCCTAACAC
genomic: GGCAAGAACAAGCGGATTTCCAAGGGAAAGAAGGGTGGCAAGAAGAAAATgtacaccttc ... tcttgtgcagCGTCGATCCTTTCTCCAAGAAGGATTGGTATGACATCAAGGCTCCTAACAC
EST: gi|162273370|gb|FC449819.1|FC449819
EST:     GCAAGAACAAGCGNGATTTCCAAGGGAAAGAAGGGTGGCAAGAAGAAAAT                         CGTCGATCCTTTCTCCAAGAAGGATTGGTATGACATCAAGGCTCCTAACAC
genomic: GCAAGAACAAGCG-GATTTCCAAGGGAAAGAAGGGTGGCAAGAAGAAAATgtacaccttc ... tcttgtgcagCGTCGATCCTTTCTCCAAGAAGGATTGGTATGACATCAAGGCTCCTAACAC
EST: gi|162244738|gb|FC423483.1|FC423483
EST:     GGCAAGAACAAGCGGATTTCCAAGGGAAAGAAGGGTGGCAAGAAGAAAAT                         CGTCGATCCTTTCTCCAAGAAGGATTGGTATGACATCAAGGCTCCTAACAC
genomic: GGCAAGAACAAGCGGATTTCCAAGGGAAAGAAGGGTGGCAAGAAGAAAATgtacaccttc ... tcttgtgcagCGTCGATCCTTTCTCCAAGAAGGATTGGTATGACATCAAGGCTCCTAACAC
EST: gi|208369634|gb|DC936368.1|DC936368
EST:     GGCAAGAACAAGCGGATTTCCAAGGGAAAGAAGGGTGGCAAGAAGAAAAT                         CGTCGATCCTTTCTCCAAGAAGGATTGGTATGACATCAAGGCTCCTAACAC
genomic: GGCAAGAACAAGCGGATTTCCAAGGGAAAGAAGGGTGGCAAGAAGAAAATgtacaccttc ... tcttgtgcagCGTCGATCCTTTCTCCAAGAAGGATTGGTATGACATCAAGGCTCCTAACAC
EST: gi|162269853|gb|FC445383.1|FC445383
EST:     GGCAAGAACAAGCGGATTTCCAAGGGAAAGAAGGGTGGCAAGAAGAAAAT                         CGTCGATCCTTTCTCCAAGAAGGATTGGTATGACATCAAGGCTCCTAACAC
genomic: GGCAAGAACAAGCGGATTTCCAAGGGAAAGAAGGGTGGCAAGAAGAAAATgtacaccttc ... tcttgtgcagCGTCGATCCTTTCTCCAAGAAGGATTGGTATGACATCAAGGCTCCTAACAC
EST: gi|162250918|gb|FC425740.1|FC425740
EST:     GGCAAGAACAAGCGGATTTCCAAGGGAAAGAAGGGTGGCAAGAAGAAAAT                         CGTCGATCCTTTCTCCAAGAAGGATTGGTATGACATCAAGGCTCCTAACAC
genomic: GGCAAGAACAAGCGGATTTCCAAGGGAAAGAAGGGTGGCAAGAAGAAAATgtacaccttc ... tcttgtgcagCGTCGATCCTTTCTCCAAGAAGGATTGGTATGACATCAAGGCTCCTAACAC
EST: gi|18330473|gb|BJ162479.1|BJ162479
EST:     GGCAAGAACAAGCGGATTTCCAAGGGAAAGAAGGGTGGCAAGAAGAAAAT                         CGTCGATCCTTTCTCCAAGAAGGATTGGTATGACATCAAGGCTCCTAACAC
genomic: GGCAAGAACAAGCGGATTTCCAAGGGAAAGAAGGGTGGCAAGAAGAAAATgtacaccttc ... tcttgtgcagCGTCGATCCTTTCTCCAAGAAGGATTGGTATGACATCAAGGCTCCTAACAC
EST: gi|18325940|gb|BJ157939.1|BJ157939
EST:     GGCAAGAACAAGCGGATTTCCAAGGGAAAGAAGGGTGGCAAGAAGAAAAT                         CGTCGATCCTTTCTCCAAGAAGGATTGGTATGACATCAAGGCTCCTAACAC
genomic: GGCAAGAACAAGCGGATTTCCAAGGGAAAGAAGGGTGGCAAGAAGAAAATgtacaccttc ... tcttgtgcagCGTCGATCCTTTCTCCAAGAAGGATTGGTATGACATCAAGGCTCCTAACAC
EST: gi|208393662|gb|DC907813.1|DC907813
EST:     GGCAAGAACAAGCGGATTTCCAAGGGAAAGAAGGGTGGCAAGAAGAAAAT                         CGTCGATCCTTTCTCCAAGAAGGATTGGTATGACATCAAGGCTCCTAACAC
genomic: GGCAAGAACAAGCGGATTTCCAAGGGAAAGAAGGGTGGCAAGAAGAAAATgtacaccttc ... tcttgtgcagCGTCGATCCTTTCTCCAAGAAGGATTGGTATGACATCAAGGCTCCTAACAC
EST: gi|162238191|gb|FC414797.1|FC414797
EST:     GGCAAGAACAAGCGGATTTCCAAGGGAAAGAAGGGTGGCAAGAAGAAAAT                         CGTCGATCCTTTCTCCAAGAAGGATTGGTATGACATCAAGGCTCCTAACAC
genomic: GGCAAGAACAAGCGGATTTCCAAGGGAAAGAAGGGTGGCAAGAAGAAAATgtacaccttc ... tcttgtgcagCGTCGATCCTTTCTCCAAGAAGGATTGGTATGACATCAAGGCTCCTAACAC
EST: gi|162203242|gb|FC379339.1|FC379339
EST:     GGCAAGAACAAGCGGATTTCCAAGGGAAAGAAGGGTGGCAAGAAGAAAAT                         CGTCGATCCTTTCTCCAAGAAGGATTGGTATGACATCAAGGCTCCTAACAC
genomic: GGCAAGAACAAGCGGATTTCCAAGGGAAAGAAGGGTGGCAAGAAGAAAATgtacaccttc ... tcttgtgcagCGTCGATCCTTTCTCCAAGAAGGATTGGTATGACATCAAGGCTCCTAACAC
EST: gi|18345894|gb|BJ177937.1|BJ177937
EST:     GGCAAGAACAAGCGGATTTCCAAGGGAAAGAAGGGTGGCAAGAAGAAAAT                         CGTCGATCCTTTCTCCAAGAAGGATTGGTATGACATCAAGGCTCCTAACAC
genomic: GGCAAGAACAAGCGGATTTCCAAGGGAAAGAAGGGTGGCAAGAAGAAAATgtacaccttc ... tcttgtgcagCGTCGATCCTTTCTCCAAGAAGGATTGGTATGACATCAAGGCTCCTAACAC
EST: gi|7147821|gb|AW509743.1|AW509743
EST:     GGCAAGAACAAGCGGATTTCCAAGGGAAAGAAGGGTGGCAAGAAGAAAAT                         CGTCGATCCTTTCTCCAAGAAGGATTGGTATGACATCAAGGCTCCTAACAC
genomic: GGCAAGAACAAGCGGATTTCCAAGGGAAAGAAGGGTGGCAAGAAGAAAATgtacaccttc ... tcttgtgcagCGTCGATCCTTTCTCCAAGAAGGATTGGTATGACATCAAGGCTCCTAACAC
EST: gi|18358145|gb|BJ190204.1|BJ190204
EST:     GGCAAGAACAAGCGGATTTCCAAGGGAAAGAAGGGTGGCAAGAAGAAAAT                         CGTCGATCCTTTCTCCAAGAAGGATTGGTATGACATCAAGGCTCCTAACAC
genomic: GGCAAGAACAAGCGGATTTCCAAGGGAAAGAAGGGTGGCAAGAAGAAAATgtacaccttc ... tcttgtgcagCGTCGATCCTTTCTCCAAGAAGGATTGGTATGACATCAAGGCTCCTAACAC
EST: gi|100379570|gb|BY949835.1|BY949835
EST:     GGCAAGAACAAGCGGATTTCCAAGGGAAAGAAGGGTGGCAAGAAGAAAAT                         CGTCGATCCTTTCTCCAAGAAGGATTGGTATGACATCAAGGCTCCTAACAC
genomic: GGCAAGAACAAGCGGATTTCCAAGGGAAAGAAGGGTGGCAAGAAGAAAATgtacaccttc ... tcttgtgcagCGTCGATCCTTTCTCCAAGAAGGATTGGTATGACATCAAGGCTCCTAACAC
EST: gi|162244737|gb|FC423482.1|FC423482
EST:     GCAAGAAGAAAAT                         CGTCGATCCTTTCTCCAAGAAGGATTGGTATGACATCAAGGCTCCTAACAC
genomic: GCAAGAAGAAAATgtacaccttc ... tcttgtgcagCGTCGATCCTTTCTCCAAGAAGGATTGGTATGACATCAAGGCTCCTAACAC
EST: gi|18367807|gb|BJ199890.1|BJ199890
EST:     GGCAAGAACAAGCGGATTTCCAAGGGAAAGAAGGGTGGCAAGAAGAAAAT                         CGTCGATCCTTTCTCCAAGAAGGATTGGTATGACATCAAGGCTCCTAACAC
genomic: GGCAAGAACAAGCGGATTTCCAAGGGAAAGAAGGGTGGCAAGAAGAAAATgtacaccttc ... tcttgtgcagCGTCGATCCTTTCTCCAAGAAGGATTGGTATGACATCAAGGCTCCTAACAC
EST: gi|208357631|gb|DC914031.1|DC914031
EST:     GGCAAGAACAAGCGGATTTCCAAGGGAAAGAAGGGTGGCAAGAAGAAAAT                         CGTCGATCCTTTCTCCAAGAAGGATTGGTATGACATCAAGGCTCCTAACAC
genomic: GGCAAGAACAAGCGGATTTCCAAGGGAAAGAAGGGTGGCAAGAAGAAAATgtacaccttc ... tcttgtgcagCGTCGATCCTTTCTCCAAGAAGGATTGGTATGACATCAAGGCTCCTAACAC
EST: gi|67717160|gb|BJ967419.1|BJ967419
EST:     GGCAAGAACAAGCGGATTTCCAAGGGAAAGAAGGGTGGCAAGAAGAAAAT                         CGTCGATCCTTTCTCCAAGAGGGATTGGTATGACATCAAGGCTCCTAACAC
genomic: GGCAAGAACAAGCGGATTTCCAAGGGAAAGAAGGGTGGCAAGAAGAAAATgtacaccttc ... tcttgtgcagCGTCGATCCTTTCTCCAAGAAGGATTGGTATGACATCAAGGCTCCTAACAC
EST: gi|67571507|gb|BJ944331.1|BJ944331
EST:     GGCAAGAACAAGCGGATTTCCAAGGGAAAGAAGGGTGGCAAGAAGAAAAT                         CGTCGATCCTTTCTCCAAGAAGGATTGGTATGACATCAAGGCTCCTAACAC
genomic: GGCAAGAACAAGCGGATTTCCAAGGGAAAGAAGGGTGGCAAGAAGAAAATgtacaccttc ... tcttgtgcagCGTCGATCCTTTCTCCAAGAAGGATTGGTATGACATCAAGGCTCCTAACAC
EST: gi|18355162|gb|BJ187221.1|BJ187221
EST:     GGCAAGAACAAGCGGATTTCCAAGGGAAAGAAGGGTGGCAAGAAGAAAAT                         CGTCGATCCTTTCTCCAAGAAGGATTGGTATGACATCAAGGCTACTAACAC
genomic: GGCAAGAACAAGCGGATTTCCAAGGGAAAGAAGGGTGGCAAGAAGAAAATgtacaccttc ... tcttgtgcagCGTCGATCCTTTCTCCAAGAAGGATTGGTATGACATCAAGGCTCCTAACAC
EST: gi|162223888|gb|FC398894.1|FC398894
EST:     GGCAAGAACAAGCGGATTTCCAAGGGAAAGAAGGGTGGCAAGAAGAAAAT                         CGTCGATCCTTTCTCCAAGAAGGATTGGTATGACATCAAGGCTCCTAACAC
genomic: GGCAAGAACAAGCGGATTTCCAAGGGAAAGAAGGGTGGCAAGAAGAAAATgtacaccttc ... tcttgtgcagCGTCGATCCTTTCTCCAAGAAGGATTGGTATGACATCAAGGCTCCTAACAC
EST: gi|100391704|gb|BY989511.1|BY989511
EST:     GGCAAGAACAAGCGGATTTCCAAGGGAAAGAAGGGTGGCAAGAAGAAAAT                         CGTCGATCCTTTCTCCAAGAAGGATTGGTATGACATCAAGGCTCCTAACAC
genomic: GGCAAGAACAAGCGGATTTCCAAGGGAAAGAAGGGTGGCAAGAAGAAAATgtacaccttc ... tcttgtgcagCGTCGATCCTTTCTCCAAGAAGGATTGGTATGACATCAAGGCTCCTAACAC
EST: gi|18329012|gb|BJ161018.1|BJ161018
EST:     GGCAAGAACAAGCGGATTTCCAAGGGAAAGAAGGGTGGCAAGAAGAAAAT                         CGTCGATCCTTTCTCCAAGAAGGATTGGTATGACATCAAGGCTCCTAACAC
genomic: GGCAAGAACAAGCGGATTTCCAAGGGAAAGAAGGGTGGCAAGAAGAAAATgtacaccttc ... tcttgtgcagCGTCGATCCTTTCTCCAAGAAGGATTGGTATGACATCAAGGCTCCTAACAC
EST: gi|18360983|gb|BJ193047.1|BJ193047
EST:     GGCAAGAACAAGCGGATTTCCAAGGGAAAGAAGGGTGGCAAGAAGAAAAT                         CGTCGATCCTTTCTCCAAGAAGGATTGGTATGACATCAAGGCTCCTAACAC
genomic: GGCAAGAACAAGCGGATTTCCAAGGGAAAGAAGGGTGGCAAGAAGAAAATgtacaccttc ... tcttgtgcagCGTCGATCCTTTCTCCAAGAAGGATTGGTATGACATCAAGGCTCCTAACAC
EST: gi|67717173|gb|BJ967432.1|BJ967432
EST:     GGCAAGAACAAGCGGATTTCCAAGGGAAAGAAGGGTGGCAAGAAGAAAAT                         CGTCGATCCTTTCTCCAAGAAGGATTGGTATGACATCAAGGCTCCTAACAC
genomic: GGCAAGAACAAGCGGATTTCCAAGGGAAAGAAGGGTGGCAAGAAGAAAATgtacaccttc ... tcttgtgcagCGTCGATCCTTTCTCCAAGAAGGATTGGTATGACATCAAGGCTCCTAACAC
EST: gi|22492691|gb|BU052614.1|BU052614
EST:     GGCAAGAACAAGCGGATTTCCAAGGGAAAGAAGGGTGGCAAGAAGAAAAT                         CGTCGATCCTTTCTCCAAGAAGGATTGGTATGACATCAAGGCTCCTAACAC
genomic: GGCAAGAACAAGCGGATTTCCAAGGGAAAGAAGGGTGGCAAGAAGAAAATgtacaccttc ... tcttgtgcagCGTCGATCCTTTCTCCAAGAAGGATTGGTATGACATCAAGGCTCCTAACAC
EST: gi|162260170|gb|FC436305.1|FC436305
EST:     GGCAAGAACAAGCGGATTTCCAAGGGAAAGAAGGGTGGCAAGAAGAAAAT                         CGTCGATCCTTTCTCCAAGAAGGATTGGTATGACATCAAGGCTCCTAACAC
genomic: GGCAAGAACAAGCGGATTTCCAAGGGAAAGAAGGGTGGCAAGAAGAAAATgtacaccttc ... tcttgtgcagCGTCGATCCTTTCTCCAAGAAGGATTGGTATGACATCAAGGCTCCTAACAC
EST: gi|18358172|gb|BJ190231.1|BJ190231
EST:     GGCAAGAACAAGCGGATTTCCAAGGGAAAGAAGGGTGGCAAGAAGAAAAT                         CGTCGATCCTTTCTCCAAGAAGGATTGGTATGACATCAAGGCTCCTAACAC
genomic: GGCAAGAACAAGCGGATTTCCAAGGGAAAGAAGGGTGGCAAGAAGAAAATgtacaccttc ... tcttgtgcagCGTCGATCCTTTCTCCAAGAAGGATTGGTATGACATCAAGGCTCCTAACAC
EST: gi|162259813|gb|FC436780.1|FC436780
EST:     GGCAAGAACAAGCGGATTTCCAAGGGAAAGAAGGGTGGCAAGAAGAAAAT                         CGTCGATCCTTTCTCCAAGAAGGATTGGTATGACATCAAGGCTCCTAACAC
genomic: GGCAAGAACAAGCGGATTTCCAAGGGAAAGAAGGGTGGCAAGAAGAAAATgtacaccttc ... tcttgtgcagCGTCGATCCTTTCTCCAAGAAGGATTGGTATGACATCAAGGCTCCTAACAC
EST: gi|18331330|gb|BJ163340.1|BJ163340
EST:     GAAGGGTGGCAAGAAGAAAAT                         CGTCGATCCTTTCTCCAAGAAGGATTGGTATGACATCAAGGCTCCTAACAC
genomic: GAAGGGTGGCAAGAAGAAAATgtacaccttc ... tcttgtgcagCGTCGATCCTTTCTCCAAGAAGGATTGGTATGACATCAAGGCTCCTAACAC
EST: gi|67719166|gb|BJ969425.1|BJ969425
EST:     GGCAAGAACAAGCGGATTTCCAAGGGAAAGAAGGGTGGCAAGAAGAAAAT                         CGTCGATCCTTTCTCCAAGAAGGATTGGTATGACATCAAGGCTCCTAACAC
genomic: GGCAAGAACAAGCGGATTTCCAAGGGAAAGAAGGGTGGCAAGAAGAAAATgtacaccttc ... tcttgtgcagCGTCGATCCTTTCTCCAAGAAGGATTGGTATGACATCAAGGCTCCTAACAC
EST: gi|67576447|gb|BJ949271.1|BJ949271
EST:     GGCAAGAACAAGCGGATTTCCAAGGGAAAGAAGGGTGGCAAGAAGAAAAT                         CGTCGATCCTTTCTCCAAGAAGGATTGGTATGACATCAAGGCTCCTAACAC
genomic: GGCAAGAACAAGCGGATTTCCAAGGGAAAGAAGGGTGGCAAGAAGAAAATgtacaccttc ... tcttgtgcagCGTCGATCCTTTCTCCAAGAAGGATTGGTATGACATCAAGGCTCCTAACAC
EST: gi|19786260|gb|BQ040455.1|BQ040455
EST:     GGCAAGAACAAGCGGATTTCCAAGGGAAAGAAGGGTGGCAAGAAGAAAAT                         CGTCGATCCTTTCTCCAAGAAGGATTGGTATGACATCAAGGCTCCTAACAC
genomic: GGCAAGAACAAGCGGATTTCCAAGGGAAAGAAGGGTGGCAAGAAGAAAATgtacaccttc ... tcttgtgcagCGTCGATCCTTTCTCCAAGAAGGATTGGTATGACATCAAGGCTCCTAACAC
EST: gi|18325466|gb|BJ157463.1|BJ157463
EST:     GGCAAGAACAAGCGGATTTCCAAGGGAAAGAAGGGTGGCAAGAAGAAAAT                         CGTCGATCCTTTCTCCAAGAAGGATTGGTATGACATCAAGGCTCCTAACAC
genomic: GGCAAGAACAAGCGGATTTCCAAGGGAAAGAAGGGTGGCAAGAAGAAAATgtacaccttc ... tcttgtgcagCGTCGATCCTTTCTCCAAGAAGGATTGGTATGACATCAAGGCTCCTAACAC
EST: gi|18365624|gb|BJ197701.1|BJ197701
EST:     GGCAAGAACAAGCGGATTTCCAAGGGAAAGAAGGGTGGCAAGAAGAAGAT                         CGTCGATCCTTTCTCCAAGAAGGATTGGTATGACATCAAGGCTCCTAACAC
genomic: GGCAAGAACAAGCGGATTTCCAAGGGAAAGAAGGGTGGCAAGAAGAAAATgtacaccttc ... tcttgtgcagCGTCGATCCTTTCTCCAAGAAGGATTGGTATGACATCAAGGCTCCTAACAC

RNA-Seq data


 ATGC   Supported by RNA-Seq exonic block that spans over the splice site

 atgs   Truncated intron sequence

Each block is as long as the maximal overhang of any read spanning the junction.
The score is the number of alignments spanning the junction.


Found data for 1 RNA-Seqlibrary.


Block sizes: 35 (upstream exon), 35 (downstream exon)
Score: 92

CCCTGCCTCCCACTGCTGCCGCTGCTCCGTCCTCCGCAACAATGGCGGTCGGCAAGAACAAGCGGATTTCCAAGGGAAAGAAGGGTGGCAAGAAGAAAATgtacaccttc ... tcttgtgcagCGTCGATCCTTTCTCCAAGAAGGATTGGTATGACATCAAGGCTCCTAACACCTTCACGCAGAAGTCGTTGGGGAAGACCCTCGTCACCAGGACGGCGGGT




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Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
CCCTGCCTCCCACTGCTGCCGCTGCTCCGTCCTCCGCAACAATGGCGGTCGGCAAGAACAAGCGGATTTCCAAGGGAAAGAAGGGTGGCAAGAAGAAAATgtacaccttccctaccttgccctccattacctccagtgccgcacttgtaggtttgtgttgcttccaaatgttccttgagcatttggtctaacatggagatgtttgagtcttgtgcag

- - - - - - - - - - - - - - - - - - - - - - - - -  GCAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - -  AAGAAC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  GCAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAA