1 5' 3' | 2 5' 3' | 3 5' 3' |
GTTTCTTCTCGGCACCTGGCGGGGTCAGGGCGAAGGTGGTTTCCCTACAATCCAGTCGTTTAAGTATGGTGAGGAGATCAAGCTATGGCATTCCGGCAAGgtgaatcgtcttaactagaccctttttctctcgtaatcagatggattgtaggattgagacgtgaagtatgttgtggtccttctcgagactcttctagcga...
species | Physcomitrella patens |
transcript | PP1S177_18V6.1 |
intron # | 1 |
splice site | 5' |
intron type | U2 |
EST: TTTAAGTATGGTGAGGAGATC-AGCTATGGGCATTCCGGCAAG CCGGTGATTGCATACTCGCAGAAAACGTGGAAAGCAGCATCAGGAGAGCCTEST: gi|162233422|gb|FC410219.1|FC410219
genomic: TTTAAGTATGGTGAGGAGATCAAGCTAT-GGCATTCCGGCAAGgtgaatcgtc ... tttggtgcagCCGGTGATTGCATACTCGCAGAAAACGTGGAAAGCAGCATCAGGAGAGCCT
EST: TCCAGTCGTTTAAGTATGGTGAGGAGATCAAGCTATGGCATTCCGGCAAG CCGGTGATTGCATACTCGCAGAAAACGTGGAAAGCAGCATCAGGAGAGCCTEST: gi|67574657|gb|BJ947481.1|BJ947481
genomic: TCCAGTCGTTTAAGTATGGTGAGGAGATCAAGCTATGGCATTCCGGCAAGgtgaatcgtc ... tttggtgcagCCGGTGATTGCATACTCGCAGAAAACGTGGAAAGCAGCATCAGGAGAGCCT
EST: TCCAGTCGTTTAAGTATGGTGAGGAGATCAAGCTATGGCATTCCGGCAAG CCGGTGATTGCATACTCGCAGAAAACGTGGAAAGCAGCATCAGGAGAGCCTEST: gi|67698071|gb|BJ958304.1|BJ958304
genomic: TCCAGTCGTTTAAGTATGGTGAGGAGATCAAGCTATGGCATTCCGGCAAGgtgaatcgtc ... tttggtgcagCCGGTGATTGCATACTCGCAGAAAACGTGGAAAGCAGCATCAGGAGAGCCT
EST: TCCAGTCGTTTAAGTATGGTGAGGAGATCAAGCTATGGCATTCCGGCAAG CCGGTGATTGCATACTCGCAGAAAACGTGGAAAGCAGCATCAGGAGAGCCTEST: gi|162238255|gb|FC414523.1|FC414523
genomic: TCCAGTCGTTTAAGTATGGTGAGGAGATCAAGCTATGGCATTCCGGCAAGgtgaatcgtc ... tttggtgcagCCGGTGATTGCATACTCGCAGAAAACGTGGAAAGCAGCATCAGGAGAGCCT
EST: TCCAGTCGTTTAAGTATGGTGAGGAGATCAAGCTATGGCATTCCGGCAAG CCGGTGATTGCATACTCGCAGAAAACGTGGAAAGCAGCATCAGGAGAGCCT
genomic: TCCAGTCGTTTAAGTATGGTGAGGAGATCAAGCTATGGCATTCCGGCAAGgtgaatcgtc ... tttggtgcagCCGGTGATTGCATACTCGCAGAAAACGTGGAAAGCAGCATCAGGAGAGCCT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GTTTCTTCTCGGCACCTGGCGGGGTCAGGGCGAAGGTGGTTTCCCTACAATCCAGTCGTTTAAGTATGGTGAGGAGATCAAGCTATGGCATTCCGGCAAGgtgaatcgtcttaactagaccctttttctctcgtaatcagatggattgtaggattgagacgtgaagtatgttgtggtccttctcgagactcttctagcga
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGATC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGATCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAAGCT