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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CATCCGCCCAGGCATTCGTCGAGCTCCAACGCAATCACCTCGATTCGGTTTCTCATCTCGCATTCTATGATTTGTCCATCACCTTTCAAGTTCCATTTCGgtgggttccgcgatcacgcaccgggttttccattgcaagtcgagttgctagctgactgacgactgtattctcgagtgtagatctgtgtttcgtggttggatttgtgagttttgccttgtgcccaagagattcattcccaattgaagtaaggtctctactacttatttaggtttcaaaatattgggtgaatttcttgcag

Basic information

species Physcomitrella patens
transcript PP1S175_129V6.1
intron # 1
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|100446650|gb|CJ970949.1|CJ970949
EST:     TCTCATCTCGCATTCTATGATTTGTCCATCACCTTTCAAGTTCCATTTCG                         AAGTGGCTCAGATGTCGCTGCGGGCTGCGAACTTGATAGCCGCAGGGGCAA
genomic: TCTCATCTCGCATTCTATGATTTGTCCATCACCTTTCAAGTTCCATTTCGgtgggttccg ... tttcttgcagAAGTGGCTCAGATGTCGCTGCGGGCTGCGAACTTGATAGCCGCAGGGGCAA
EST: gi|162231926|gb|FC408792.1|FC408792
EST:     ATCACCTTTCAAGTTCCATTTCG                         AAGTGGCTCAGATGTCGCTGCGGGCTGCGAACTTGATAGCCGCAGGGGCAA
genomic: ATCACCTTTCAAGTTCCATTTCGgtgggttccg ... tttcttgcagAAGTGGCTCAGATGTCGCTGCGGGCTGCGAACTTGATAGCCGCAGGGGCAA
EST: gi|100429680|gb|BY959684.1|BY959684
EST:     TCTCATCTCGCATTCTATGATTTGTCCATCACCTTTCAAGTTCCATTTCG                         AAGTGGCTCAGATGTCGCTGCGGGCTGCGAACTTGATAGCCGCAGGGGCAA
genomic: TCTCATCTCGCATTCTATGATTTGTCCATCACCTTTCAAGTTCCATTTCGgtgggttccg ... tttcttgcagAAGTGGCTCAGATGTCGCTGCGGGCTGCGAACTTGATAGCCGCAGGGGCAA
EST: gi|162223327|gb|FC400569.1|FC400569
EST:     CATCACCTTTCAAGTTCCATTTCG                         AAGTGGCTCAGATGTCGCTGCGGGCTGCGAACTTGATAGCCGCAGGGGCAA
genomic: CATCACCTTTCAAGTTCCATTTCGgtgggttccg ... tttcttgcagAAGTGGCTCAGATGTCGCTGCGGGCTGCGAACTTGATAGCCGCAGGGGCAA
EST: gi|18349218|gb|BJ181267.1|BJ181267
EST:     TCTCATCTCGCATTCTATGATTTGTCCATCACCTTTCAAGTTCCATTTCG                         AAGTGGCTCAGATGTCGCTGCGGGCTGCGAACTTGATAGCCGCAGGGGCAA
genomic: TCTCATCTCGCATTCTATGATTTGTCCATCACCTTTCAAGTTCCATTTCGgtgggttccg ... tttcttgcagAAGTGGCTCAGATGTCGCTGCGGGCTGCGAACTTGATAGCCGCAGGGGCAA
EST: gi|100437874|gb|BY961539.1|BY961539
EST:     ATCTCGCATTCTATGATTTGTCCATCACCTTTCAAGTTCCATTTCG                         AAGTGGCTCAGATGTCGCTGCGGGCTGCGAACTTGATAGCCGCAGGGGCAA
genomic: ATCTCGCATTCTATGATTTGTCCATCACCTTTCAAGTTCCATTTCGgtgggttccg ... tttcttgcagAAGTGGCTCAGATGTCGCTGCGGGCTGCGAACTTGATAGCCGCAGGGGCAA
EST: gi|100353475|gb|BY964825.1|BY964825
EST:     TTCTATGATTTGTCCATCACCTTTCAAGTTCCATTTCG                         AAGTGGCTCAGATGTCGCTGCGGGCTGCGAACTTGATAGCCGCAGGGGCAA
genomic: TTCTATGATTTGTCCATCACCTTTCAAGTTCCATTTCGgtgggttccg ... tttcttgcagAAGTGGCTCAGATGTCGCTGCGGGCTGCGAACTTGATAGCCGCAGGGGCAA
EST: gi|18357672|gb|BJ189731.1|BJ189731
EST:     TCTCATCTCGCATTCTATGATTTGTCCATCACCTTTCAAGTTCCATTTCG                         AAGTGGCTCAGATGTCGCTGCGGGCTGCGAACTTGATAGCCGCAGGGGCAA
genomic: TCTCATCTCGCATTCTATGATTTGTCCATCACCTTTCAAGTTCCATTTCGgtgggttccg ... tttcttgcagAAGTGGCTCAGATGTCGCTGCGGGCTGCGAACTTGATAGCCGCAGGGGCAA