1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
AGCTCCACGCCCACTACGTTGCCCTCCCTCCTGCAGCTCCGTTCCTTCGTCCCCCTCGGCCGCAGCCGCATCACCAGCTGCAGCAGCCATGGCTGGATTGgtgcgcttctctccattccctacctcgctttgctctacgattcatgggtttgaggttaaattttgtgggtttgcgtctggatccgcgattttgaggttgtgaaggtttggggttttttctggggtttgagggttcctgtattgaccaatagaggatgtttgggtgagcag
species | Physcomitrella patens |
transcript | PP1S172_22V6.1 |
intron # | 1 |
splice site | 5' |
intron type | U2 |
EST: CCCCCTCGGCCGCAGCCGCATCACCAGCTGCAGCAGCCATGGCTGGATTG AAGCTTTACGCCAACCCGGTGAACAAAAATGCGTACAAGGCCTTGATTGCCEST: gi|208376452|gb|DC902749.1|DC902749
genomic: CCCCCTCGGCCGCAGCCGCATCACCAGCTGCAGCAGCCATGGCTGGATTGgtgcgcttct ... gggtgagcagAAGCTTTACGCCAACCCGGTGAACAAAAATGCGTACAAGGCCTTGATTGCC
EST: CCCCCTCGGCCGCAGCCGCATCACCAGCTGCAGCAGCCATGGCTGGATTG AAGCTTTACGCCAACCCGGTGAACAAAAATGCGTACAAGGCCTTGATTGCCEST: gi|67717448|gb|BJ967707.1|BJ967707
genomic: CCCCCTCGGCCGCAGCCGCATCACCAGCTGCAGCAGCCATGGCTGGATTGgtgcgcttct ... gggtgagcagAAGCTTTACGCCAACCCGGTGAACAAAAATGCGTACAAGGCCTTGATTGCC
EST: CCCCCTCGGCCGCAGCCGCATCACCAGCTGCAGCAGCCATGGCTGGATTG AAGCTTTACGCCAACCCGGTGAACAAAAATGCGTACAAGGCCTTGATTGCCEST: gi|208389492|gb|DC942199.1|DC942199
genomic: CCCCCTCGGCCGCAGCCGCATCACCAGCTGCAGCAGCCATGGCTGGATTGgtgcgcttct ... gggtgagcagAAGCTTTACGCCAACCCGGTGAACAAAAATGCGTACAAGGCCTTGATTGCC
EST: CCCCCTCGGCCGCAGCCGCATCACCAGCTGCAGCAGCCATGGCTGGATTG AAGCTTTACGCCAACCCGGTGAACAAAAATGCGTACAAGGCCTTGATTGCCEST: gi|100369785|gb|BY967385.1|BY967385
genomic: CCCCCTCGGCCGCAGCCGCATCACCAGCTGCAGCAGCCATGGCTGGATTGgtgcgcttct ... gggtgagcagAAGCTTTACGCCAACCCGGTGAACAAAAATGCGTACAAGGCCTTGATTGCC
EST: CCCCCTCGGCCGCAGCCGCATCACCAGCTGCAGCAGCCATGGCTGGATTG AAGCTTTACGCCAACCCGGTGAACAAAAATGCGTACAAGGCCTTGATTGCCEST: gi|162174625|gb|FC350280.1|FC350280
genomic: CCCCCTCGGCCGCAGCCGCATCACCAGCTGCAGCAGCCATGGCTGGATTGgtgcgcttct ... gggtgagcagAAGCTTTACGCCAACCCGGTGAACAAAAATGCGTACAAGGCCTTGATTGCC
EST: CCCCCTCGGCCGCAGCCGCATCACCAGCTGCAGCAGCCATGGCTGGATTG AAGCTTTACGCCAACCCGGTGAACAAAAATGCGTACAAGGCCTTGATTGCCEST: gi|18347384|gb|BJ179430.1|BJ179430
genomic: CCCCCTCGGCCGCAGCCGCATCACCAGCTGCAGCAGCCATGGCTGGATTGgtgcgcttct ... gggtgagcagAAGCTTTACGCCAACCCGGTGAACAAAAATGCGTACAAGGCCTTGATTGCC
EST: CCCCCTCGGCCGCAGCCGCATCACCAGCTGCAGCAGCCATGGCTGGATTG AAGCTTTACGCCAACCCGGTGAACAAAAATGCGTACAAGGCCTTGATTGCCEST: gi|18356387|gb|BJ188446.1|BJ188446
genomic: CCCCCTCGGCCGCAGCCGCATCACCAGCTGCAGCAGCCATGGCTGGATTGgtgcgcttct ... gggtgagcagAAGCTTTACGCCAACCCGGTGAACAAAAATGCGTACAAGGCCTTGATTGCC
EST: CCCCCTCGGCCGCAGCCGCATCACCAGCTGCAGCAGCCATGGCTGGATTG AAGCTTTACGCCAACCCGGTGAACAAAAATGCGTACAAGGCCTTGATTGCCEST: gi|67718156|gb|BJ968415.1|BJ968415
genomic: CCCCCTCGGCCGCAGCCGCATCACCAGCTGCAGCAGCCATGGCTGGATTGgtgcgcttct ... gggtgagcagAAGCTTTACGCCAACCCGGTGAACAAAAATGCGTACAAGGCCTTGATTGCC
EST: CCCCCTCGGCCGCAGCCGCACCACCAGCTGCAGCAGCCATGGCTGGATTG AAGCTTTACGCCAACCCGGTGAACAAAAATGCGTACAAGGCCTTGATTGCCEST: gi|67704223|gb|BJ964456.1|BJ964456
genomic: CCCCCTCGGCCGCAGCCGCATCACCAGCTGCAGCAGCCATGGCTGGATTGgtgcgcttct ... gggtgagcagAAGCTTTACGCCAACCCGGTGAACAAAAATGCGTACAAGGCCTTGATTGCC
EST: CCCCCTCGGCCGCAGCCGCATCACCAGCTGCAGCAGCCATGGCTGGATTG AAGCTTTACGCCAACCCGGTGAACAAAAATGCGTACAAGGCCTTGATTGCCEST: gi|18369160|gb|BJ201245.1|BJ201245
genomic: CCCCCTCGGCCGCAGCCGCATCACCAGCTGCAGCAGCCATGGCTGGATTGgtgcgcttct ... gggtgagcagAAGCTTTACGCCAACCCGGTGAACAAAAATGCGTACAAGGCCTTGATTGCC
EST: CCCCCTCGGCCGCAGCCGCATCACCAGCTGCAGCAGCCATGGCTGGATTG AAGCTTTACGCCAACCCGGTGAACAAAAATGCGTACAAGGCCTTGATTGCCEST: gi|100353391|gb|BY964783.1|BY964783
genomic: CCCCCTCGGCCGCAGCCGCATCACCAGCTGCAGCAGCCATGGCTGGATTGgtgcgcttct ... gggtgagcagAAGCTTTACGCCAACCCGGTGAACAAAAATGCGTACAAGGCCTTGATTGCC
EST: CCCCCTCGGCCGCAGCCGCATCACCAGCTGCAGCAGCCATGGCTGGATTG AAGCTTTACGCCAACCCGGTGAACAAAAATGCGTACAAGGCCTTGATTGCCEST: gi|67716670|gb|BJ966930.1|BJ966930
genomic: CCCCCTCGGCCGCAGCCGCATCACCAGCTGCAGCAGCCATGGCTGGATTGgtgcgcttct ... gggtgagcagAAGCTTTACGCCAACCCGGTGAACAAAAATGCGTACAAGGCCTTGATTGCC
EST: CCCCCTCGGCCGCAGCCGCATCACCAGCTGCAGCAGCCATGGCTGGATTG AAGCTTTACGCCAACCCGGTGAACAAAAATGCGTACAAGGCCTTGATTGCCEST: gi|208390428|gb|DC933685.1|DC933685
genomic: CCCCCTCGGCCGCAGCCGCATCACCAGCTGCAGCAGCCATGGCTGGATTGgtgcgcttct ... gggtgagcagAAGCTTTACGCCAACCCGGTGAACAAAAATGCGTACAAGGCCTTGATTGCC
EST: GCATCACCAGCCTGCAGCAGCCATGGCTGGATTG AAGCTTTACGCCAACCCGGTGAACAAAAATGCGTACAAAGCCTTGATTGCCEST: gi|67717265|gb|BJ967524.1|BJ967524
genomic: GCATCACCAG-CTGCAGCAGCCATGGCTGGATTGgtgcgcttct ... gggtgagcagAAGCTTTACGCCAACCCGGTGAACAAAAATGCGTACAAGGCCTTGATTGCC
EST: CCCCCTCGGCCGCAGCCGCATCACCAGCTGCAGCAGCCATGGCTGGATTG AAGCTTTACGCCAACCCGGTGAACAAAAATGCGTACAAGGCCTTGATTGCCEST: gi|100355882|gb|BY946086.1|BY946086
genomic: CCCCCTCGGCCGCAGCCGCATCACCAGCTGCAGCAGCCATGGCTGGATTGgtgcgcttct ... gggtgagcagAAGCTTTACGCCAACCCGGTGAACAAAAATGCGTACAAGGCCTTGATTGCC
EST: CCCCCTCGGCCGCAGCCGCATCACCAGCTGCAGCAGCCATGGCTGGATTG AAGCTTTACGCCAACCCGGTGAACAAAAATGCGTACAAGGCCTTGATTGCCEST: gi|67712935|gb|BJ966384.1|BJ966384
genomic: CCCCCTCGGCCGCAGCCGCATCACCAGCTGCAGCAGCCATGGCTGGATTGgtgcgcttct ... gggtgagcagAAGCTTTACGCCAACCCGGTGAACAAAAATGCGTACAAGGCCTTGATTGCC
EST: CCCCCTCGGCCGCAGCCGCATCACCAGCTGCAGCAGCCATGGCTGGATTG AAGCTTTACGCCAACCCGGTGAACAAAAATGCGTACAAGGCCTTGATTGCCEST: gi|162229414|gb|FC405605.1|FC405605
genomic: CCCCCTCGGCCGCAGCCGCATCACCAGCTGCAGCAGCCATGGCTGGATTGgtgcgcttct ... gggtgagcagAAGCTTTACGCCAACCCGGTGAACAAAAATGCGTACAAGGCCTTGATTGCC
EST: CCCCCTCGGCCGCAGCCGCATCACCAGCTGCAGCAGCCATGGCTGGATTG AAGCTTTACGCCAACCCGGTGAACAAAAATGCGTACAAGGCCTTGATTGCCEST: gi|100383611|gb|BY969140.1|BY969140
genomic: CCCCCTCGGCCGCAGCCGCATCACCAGCTGCAGCAGCCATGGCTGGATTGgtgcgcttct ... gggtgagcagAAGCTTTACGCCAACCCGGTGAACAAAAATGCGTACAAGGCCTTGATTGCC
EST: CCCCCTCGGCCGCAGCCGCATCACCAGCTGCAGCAGCCATGGCTGGATTG AAGCTTTACGCCAACCCGGTGAACAAAAATGCGTACAAGGCCTTGATTGCCEST: gi|18366975|gb|BJ199055.1|BJ199055
genomic: CCCCCTCGGCCGCAGCCGCATCACCAGCTGCAGCAGCCATGGCTGGATTGgtgcgcttct ... gggtgagcagAAGCTTTACGCCAACCCGGTGAACAAAAATGCGTACAAGGCCTTGATTGCC
EST: CCCCCTCGGCCGCAGCCGCATCACCAGCTGCAGCAGCCATGGCTGGATTG AAGCTTTACGCCAACCCGGTGAACAAAAATGCGTACAAGGCCTTGATTGCCEST: gi|18346613|gb|BJ178658.1|BJ178658
genomic: CCCCCTCGGCCGCAGCCGCATCACCAGCTGCAGCAGCCATGGCTGGATTGgtgcgcttct ... gggtgagcagAAGCTTTACGCCAACCCGGTGAACAAAAATGCGTACAAGGCCTTGATTGCC
EST: CCCCCTCGGCCGCAGCCGCATCACCAGCTGCAGCAGCCATGGCTGGATTG AAGCTTTACGCCAACCCGGTGAACAAAAATGCGTACAAGGCCTTGATTGCCEST: gi|18354799|gb|BJ186857.1|BJ186857
genomic: CCCCCTCGGCCGCAGCCGCATCACCAGCTGCAGCAGCCATGGCTGGATTGgtgcgcttct ... gggtgagcagAAGCTTTACGCCAACCCGGTGAACAAAAATGCGTACAAGGCCTTGATTGCC
EST: CCCCCTCGGCCGCAGCCGCATCACCAGCTGCAGCAGCCATGGCTGGATTG AAGCTTTACGCCAACCCGGTGAACAAAAATGCGTACAAGGCCTTGATTGCCEST: gi|208367162|gb|DC935962.1|DC935962
genomic: CCCCCTCGGCCGCAGCCGCATCACCAGCTGCAGCAGCCATGGCTGGATTGgtgcgcttct ... gggtgagcagAAGCTTTACGCCAACCCGGTGAACAAAAATGCGTACAAGGCCTTGATTGCC
EST: CCCCCTCGGCCGCAGCCGCATCACCAGCTGCAGCAGCCATGGCTGGATTG AAGCTTTACGCCAACCCGGTGAACAAAAATGCGTACAAGGCCTTGATTGCCEST: gi|18341969|gb|BJ174004.1|BJ174004
genomic: CCCCCTCGGCCGCAGCCGCATCACCAGCTGCAGCAGCCATGGCTGGATTGgtgcgcttct ... gggtgagcagAAGCTTTACGCCAACCCGGTGAACAAAAATGCGTACAAGGCCTTGATTGCC
EST: CCCCCTCGGCCGCAGCCGCATCACCAGCTGCAGCAGCCATGGCTGGATTG AAGCTTTACGCCAACCCGGTGAACAAAAATGCGTACAAGGCCTTGATTGCCEST: gi|18356942|gb|BJ189001.1|BJ189001
genomic: CCCCCTCGGCCGCAGCCGCATCACCAGCTGCAGCAGCCATGGCTGGATTGgtgcgcttct ... gggtgagcagAAGCTTTACGCCAACCCGGTGAACAAAAATGCGTACAAGGCCTTGATTGCC
EST: CCCCCTCGGCCGCAGCCGCATCACCAGCTGCAGCAGCCATGGCTGGATTG AAGCTTTACGCCAACCCGGTGAACAAAAATGCGTACAAGGCCTTGATTGCCEST: gi|67571497|gb|BJ944321.1|BJ944321
genomic: CCCCCTCGGCCGCAGCCGCATCACCAGCTGCAGCAGCCATGGCTGGATTGgtgcgcttct ... gggtgagcagAAGCTTTACGCCAACCCGGTGAACAAAAATGCGTACAAGGCCTTGATTGCC
EST: CCCCCTCGGCCGCAGCCGCATCACCAGCTGCAGCAGCCATGGCTGGATTG AAGCTTTACGCCAACCCGGTGAACAAAAATGCGTACAAGGCCTTGATTGCCEST: gi|100363442|gb|BY966391.1|BY966391
genomic: CCCCCTCGGCCGCAGCCGCATCACCAGCTGCAGCAGCCATGGCTGGATTGgtgcgcttct ... gggtgagcagAAGCTTTACGCCAACCCGGTGAACAAAAATGCGTACAAGGCCTTGATTGCC
EST: CCCCCTCGGCCGCAGCCGCATCACCAGCTGCAGCAGCCATGGCTGGATTG AAGCTTTACGCCAACCCGGTGAACAAAAATGCGTACAAGGCCTTGATTGCCEST: gi|18372682|gb|BJ204284.1|BJ204284
genomic: CCCCCTCGGCCGCAGCCGCATCACCAGCTGCAGCAGCCATGGCTGGATTGgtgcgcttct ... gggtgagcagAAGCTTTACGCCAACCCGGTGAACAAAAATGCGTACAAGGCCTTGATTGCC
EST: CCCCCTCGGCCGCAGCCGCATCACCAGCTGCAGCAGCCATGGCTGGATTG AAGCTTTACGCCAACCCGGTGAACAAAAATGCGTACAAGGCCTTGATTGCCEST: gi|67703235|gb|BJ963468.1|BJ963468
genomic: CCCCCTCGGCCGCAGCCGCATCACCAGCTGCAGCAGCCATGGCTGGATTGgtgcgcttct ... gggtgagcagAAGCTTTACGCCAACCCGGTGAACAAAAATGCGTACAAGGCCTTGATTGCC
EST: CCCCCTCGGCCGCAGCCGCATCACCAGCTGCAGCAGCCATGGCTGGATTG AAGCTTTACGCCAACCCGGTGAACAAAAATGCGTACAAGGCCTTGATTGCCEST: gi|67717486|gb|BJ967745.1|BJ967745
genomic: CCCCCTCGGCCGCAGCCGCATCACCAGCTGCAGCAGCCATGGCTGGATTGgtgcgcttct ... gggtgagcagAAGCTTTACGCCAACCCGGTGAACAAAAATGCGTACAAGGCCTTGATTGCC
EST: CCCCCTCGGCCGCAGCCGCATCACCAGCTGCAGCAGCCATGGCTGGATTG AAGCTTTACGCCAACCCGGTGAACAAAAATGCGTACAAGGCCTTGATTGCCEST: gi|67569243|gb|BJ942067.1|BJ942067
genomic: CCCCCTCGGCCGCAGCCGCATCACCAGCTGCAGCAGCCATGGCTGGATTGgtgcgcttct ... gggtgagcagAAGCTTTACGCCAACCCGGTGAACAAAAATGCGTACAAGGCCTTGATTGCC
EST: CCCCCTCGGCCGCAGCCGCATCACCAGCTGCAGCAGCCATGGCTGGATTG AAGCTTTACGCCAACCCGGTGAACAAAAATGCGTACAAGGCCTTGATTGCCEST: gi|18364140|gb|BJ196213.1|BJ196213
genomic: CCCCCTCGGCCGCAGCCGCATCACCAGCTGCAGCAGCCATGGCTGGATTGgtgcgcttct ... gggtgagcagAAGCTTTACGCCAACCCGGTGAACAAAAATGCGTACAAGGCCTTGATTGCC
EST: CCCCCTCGGCCGCAGCCGCATCACCAGCTGCAGCAGCCATGGCTGGATTG AAGCTTTACGCCAACCCGGTGAACAAAAATGCGTACAAGGCCTTGATTGCCEST: gi|100415505|gb|BY992875.1|BY992875
genomic: CCCCCTCGGCCGCAGCCGCATCACCAGCTGCAGCAGCCATGGCTGGATTGgtgcgcttct ... gggtgagcagAAGCTTTACGCCAACCCGGTGAACAAAAATGCGTACAAGGCCTTGATTGCC
EST: CCCCCTCGGCCGCAGCCGCATCACCAGCTGCAGCAGCCATGGCTGGATTG AAGCTTTACGCCAACCCGGTGAACAAAAATGCGTACAAGGCCTTGATTGCCEST: gi|100360303|gb|BY966108.1|BY966108
genomic: CCCCCTCGGCCGCAGCCGCATCACCAGCTGCAGCAGCCATGGCTGGATTGgtgcgcttct ... gggtgagcagAAGCTTTACGCCAACCCGGTGAACAAAAATGCGTACAAGGCCTTGATTGCC
EST: CCCCCTCGGCCGCAGCCGCATCACCAGCTGCAGCAGCCATGGCTGGATTG AAGCTTTACGCCAACCCGGTGAACAAAAATGCGTACAAGGCCTTGATTGCCEST: gi|100427995|gb|BY959230.1|BY959230
genomic: CCCCCTCGGCCGCAGCCGCATCACCAGCTGCAGCAGCCATGGCTGGATTGgtgcgcttct ... gggtgagcagAAGCTTTACGCCAACCCGGTGAACAAAAATGCGTACAAGGCCTTGATTGCC
EST: CCCCCTCGGCCGCAGCCGCATCACCAGCTGCAGCAGCCATGGCTGGATTG AAGCTTTACGCCAACCCGGTGAACAAAAATGCGTACAAGGCCTTGATTGCC
genomic: CCCCCTCGGCCGCAGCCGCATCACCAGCTGCAGCAGCCATGGCTGGATTGgtgcgcttct ... gggtgagcagAAGCTTTACGCCAACCCGGTGAACAAAAATGCGTACAAGGCCTTGATTGCC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| AGCTCCACGCCCACTACGTTGCCCTCCCTCCTGCAGCTCCGTTCCTTCGTCCCCCTCGGCCGCAGCCGCATCACCAGCTGCAGCAGCCATGGCTGGATTGgtgcgcttctctccattccctacctcgctttgctctacgattcatgggtttgaggttaaattttgtgggtttgcgtctggatccgcgattttgaggttgtgaaggtttggggttttttctggggtttgagggttcctgtattgaccaatagaggatgtttgggtgagcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGGA