1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' |
AGCCTCAGTCGCTGAAGAAGCTTTCTCTCAAGTCTCTAAAGCGGGCTTTGGATATCTTCGCTCCCGTCCATGGCGACCGCATTTCTGCAGTACCCGAGGGgtacatgtttcttactgattcgttggagatttcactgctgcttattctaagaatttcattggttttgcactgatccctggttgcgatacagggtattttt...
species | Physcomitrella patens |
transcript | PP1S169_73V6.2 |
intron # | 1 |
splice site | 5' |
intron type | U2 |
EST: GATATCTTCGCTCCCGTCCATGGCGACCGCATTTCTGCAGTACCCGAGGG GAGCAAAATTCGCGTCACCTGCAAGEST: gi|100379420|gb|BY986628.1|BY986628
genomic: GATATCTTCGCTCCCGTCCATGGCGACCGCATTTCTGCAGTACCCGAGGGgtacatgttt ... tctgaagcagGAGCAAAATTCGCGTCACCTGCAAG
EST: GATATCTTCGCTCCCGTCCATGGCGACCGCATTTCTGCAGTACCCGAGGG GAGCAAAATTCGCGTCACCTGCAAGEST: gi|18348253|gb|BJ180300.1|BJ180300
genomic: GATATCTTCGCTCCCGTCCATGGCGACCGCATTTCTGCAGTACCCGAGGGgtacatgttt ... tctgaagcagGAGCAAAATTCGCGTCACCTGCAAG
EST: GATATCTTCGCTCCCGTCCATGGCGACCGCATTTCTGCAGTACCCGAGGG GAGCAAAATTCGCGTCACCTGCAAGEST: gi|162160839|gb|FC337661.1|FC337661
genomic: GATATCTTCGCTCCCGTCCATGGCGACCGCATTTCTGCAGTACCCGAGGGgtacatgttt ... tctgaagcagGAGCAAAATTCGCGTCACCTGCAAG
EST: GATATCTTCGCTCCCGTCCATGGCGACCGCATTTCTGCAGTACCCGAGGG GAGCAAAATTCGCGTCACCTGCAAGEST: gi|162183681|gb|FC359909.1|FC359909
genomic: GATATCTTCGCTCCCGTCCATGGCGACCGCATTTCTGCAGTACCCGAGGGgtacatgttt ... tctgaagcagGAGCAAAATTCGCGTCACCTGCAAG
EST: GATATCTTCGCTCCCGTCCATGGCGACCGCATTTCTGCAGTACCCGAGGG GAGCAAAATTCGCGTCACCTGCAAGEST: gi|18343267|gb|BJ175305.1|BJ175305
genomic: GATATCTTCGCTCCCGTCCATGGCGACCGCATTTCTGCAGTACCCGAGGGgtacatgttt ... tctgaagcagGAGCAAAATTCGCGTCACCTGCAAG
EST: GATATCTTCGCTCCCGTCCATGGCGACCGCATTTCTGCAGTACCCGAGGG GAGCAAAATTCGCGTCACCTGCAAGEST: gi|18353255|gb|BJ185310.1|BJ185310
genomic: GATATCTTCGCTCCCGTCCATGGCGACCGCATTTCTGCAGTACCCGAGGGgtacatgttt ... tctgaagcagGAGCAAAATTCGCGTCACCTGCAAG
EST: GATATCTTCGCTCCCGTCCATGGCGACCGCATTTCTGCAGTACCCGAGGG GAGCAAAATTCGCGTCACCTGCAAGEST: gi|67702120|gb|BJ962353.1|BJ962353
genomic: GATATCTTCGCTCCCGTCCATGGCGACCGCATTTCTGCAGTACCCGAGGGgtacatgttt ... tctgaagcagGAGCAAAATTCGCGTCACCTGCAAG
EST: GATATCTTCGCTCCCGTCCATGGCGACCGCATTTCTGCAGTACCCGAGGG GAGCAAAATTCGCGTCACCTGCAAGEST: gi|18349577|gb|BJ181627.1|BJ181627
genomic: GATATCTTCGCTCCCGTCCATGGCGACCGCATTTCTGCAGTACCCGAGGGgtacatgttt ... tctgaagcagGAGCAAAATTCGCGTCACCTGCAAG
EST: GATATCTTCGCTCCCGTCCATGGCGACCGCATTTCTGCAGTACCCGAGGG GAGCAAAATTCGCGTCACCTGCAAGEST: gi|18350303|gb|BJ182354.1|BJ182354
genomic: GATATCTTCGCTCCCGTCCATGGCGACCGCATTTCTGCAGTACCCGAGGGgtacatgttt ... tctgaagcagGAGCAAAATTCGCGTCACCTGCAAG
EST: GATATCTTCGCTCCCGTCCATGGCGACCGCATTTCTGCAGTACCCGAGGG GAGCAAAATTCGCGTCACCTGCAAGEST: gi|18344551|gb|BJ176592.1|BJ176592
genomic: GATATCTTCGCTCCCGTCCATGGCGACCGCATTTCTGCAGTACCCGAGGGgtacatgttt ... tctgaagcagGAGCAAAATTCGCGTCACCTGCAAG
EST: GATATCTTCGCTCCCGTCCATGGCGACCGCATTTCTGCAGTACCCGAGGG GAGCAAAATTCGCGTCACCTGCAAGEST: gi|18344205|gb|BJ176244.1|BJ176244
genomic: GATATCTTCGCTCCCGTCCATGGCGACCGCATTTCTGCAGTACCCGAGGGgtacatgttt ... tctgaagcagGAGCAAAATTCGCGTCACCTGCAAG
EST: GATATCTTCGCTCCCGTCCATGGCGACCGCATTTCTGCAGTACCCGAGGG GAGCAAAATTCGCGTCACCTGCAAGEST: gi|18364666|gb|BJ196739.1|BJ196739
genomic: GATATCTTCGCTCCCGTCCATGGCGACCGCATTTCTGCAGTACCCGAGGGgtacatgttt ... tctgaagcagGAGCAAAATTCGCGTCACCTGCAAG
EST: GATATCTTCGCTCCCGTCCATGGCGACCGCATTTCTGCAGTACCCGAGGG GAGCAAAATTCGCGTCACCTGCAAGEST: gi|18328479|gb|BJ160484.1|BJ160484
genomic: GATATCTTCGCTCCCGTCCATGGCGACCGCATTTCTGCAGTACCCGAGGGgtacatgttt ... tctgaagcagGAGCAAAATTCGCGTCACCTGCAAG
EST: GATATCTTCGCTCCCGTCCATGGCGACCGCATTTCTGCAGTACCCGAGGG GAGCAAAATTCGCGTCACCTGCAAGEST: gi|18352311|gb|BJ184365.1|BJ184365
genomic: GATATCTTCGCTCCCGTCCATGGCGACCGCATTTCTGCAGTACCCGAGGGgtacatgttt ... tctgaagcagGAGCAAAATTCGCGTCACCTGCAAG
EST: GATATCTTCGCTCCCGTCCATGGCGACCGCATTTCTGCAGTACCCGAGGG GAGCAAAATTCGCGTCACCTGCAAGEST: gi|100422342|gb|BY976327.1|BY976327
genomic: GATATCTTCGCTCCCGTCCATGGCGACCGCATTTCTGCAGTACCCGAGGGgtacatgttt ... tctgaagcagGAGCAAAATTCGCGTCACCTGCAAG
EST: GATATCTTCGCTCCCGTCCATGGCGACCGCATTTCTGCAGTACCCGAGGG GAGCAAAATTCGCGTCACCTGCAAG
genomic: GATATCTTCGCTCCCGTCCATGGCGACCGCATTTCTGCAGTACCCGAGGGgtacatgttt ... tctgaagcagGAGCAAAATTCGCGTCACCTGCAAG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| AGCCTCAGTCGCTGAAGAAGCTTTCTCTCAAGTCTCTAAAGCGGGCTTTGGATATCTTCGCTCCCGTCCATGGCGACCGCATTTCTGCAGTACCCGAGGGgtacatgtttcttactgattcgttggagatttcactgctgcttattctaagaatttcattggttttgcactgatccctggttgcgatacagggtattttt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGCAG