Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CATGTTGGCGCGTGCCAGTTTAGGATCTCTTGTGGAGCAGGATGTTGAGTTTGTAGGGCCTGGAAAAAGTAATACAGCATTGGGTTGAGTTTACATTTCGgtattgtgttcttttaagctcatagttctgggagttctgcttgttggggttagttacgagtagagagggttgtgtgcgtaatcggttgtgtcgattttga...

Basic information

species Physcomitrella patens
transcript PP1S168_28V6.2
intron # 1
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|18347633|gb|BJ179680.1|BJ179680
EST:     TTGTAGGGCCTGGAAAAAGTAATACAGCATTGGGTTGAGTTTACATTTCG                         GGAGTTTAAACGATGGCAACCATGGAGAAGACGTGCACGTTATTAGTGCAT
genomic: TTGTAGGGCCTGGAAAAAGTAATACAGCATTGGGTTGAGTTTACATTTCGgtattgtgtt ... gtgggttcagGGAGTTTAAACGATGGCAACCATGGAGAAGACGTGCACGTTATTAGTGCAT
EST: gi|18347899|gb|BJ179946.1|BJ179946
EST:     TTGTAGGGCCTGGAAAAAGTAATACAGCATTGGGTTGAGTTTACATTTCG                         GGAGTTTAAACGATGGCAACCATGGAGAAGACGTGCACGTTATTAGTGCAT
genomic: TTGTAGGGCCTGGAAAAAGTAATACAGCATTGGGTTGAGTTTACATTTCGgtattgtgtt ... gtgggttcagGGAGTTTAAACGATGGCAACCATGGAGAAGACGTGCACGTTATTAGTGCAT
EST: gi|18361923|gb|BJ193990.1|BJ193990
EST:     TTGTAGGGCCTGGAAAAAGTAATACAGCATTGGGTTGAGTTTACATTTCG                         GGAGTTTAAACGATGGCAACCATGGAGAAGACGTGCACGTTATTAGTGCAT
genomic: TTGTAGGGCCTGGAAAAAGTAATACAGCATTGGGTTGAGTTTACATTTCGgtattgtgtt ... gtgggttcagGGAGTTTAAACGATGGCAACCATGGAGAAGACGTGCACGTTATTAGTGCAT