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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TGGAGCCGGCACCATGGATGAAGAGTACGATGTGATTGTGCTGGGCACCGGGCTGAAGGAGTGCATCCTCAGTGGGCTACTCTCCGTGGATCGTCTCAAGgtgggtgggatcgcagatcgtggttgatctgtgtgactcgggcggtgtggcgtagctgccggctctctgggtgtagcgtggatttgtggtcggcgaggga...

Basic information

species Physcomitrella patens
transcript PP1S167_1V6.1
intron # 1
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: PP1S167_1V6.1 (Physcomitrella patens), 5'ss of exon 1
lower sequence: LOC_Os03g16900.1 (Oryza sativa), 5'ss of exon 1
TGGAGCCGGCACCATGGATGAAGAGTACGATGTGATTGTGCTGGGCACCGGGCTGAAGGAGTGCATCCTCAGTGGGCTACTCTCCGTGGATCGTCTCAAGgtgggtgggatcgcagatcgtggttgatctgtgtgac-tcgggcggtgtggcgtagctgccggct-ctctgggtgtagcgtggatttgtggtcggcgaggga
 ||||| |   | |||||||| |||||||| ||||| |||||||| || ||||| |||||||||||| |||| || || |||||||| ||| | |||||||||   |  ||| ||  ||     |      ||   | || |   |     ||    |||   || ||   | ||  |||||  |  |   | |  ||    
GGGAGCGGCGGCGATGGATGAGGAGTACGACGTGATCGTGCTGGGGACGGGGCTCAAGGAGTGCATCATCAGCGGCCTCCTCTCCGTCGATGGCCTCAAGgtgaccga-atcccatctccaatctctcgaatgcaccctctgattgcaactcgacaatgcgttctactgctgctggtgcgtgcgtccgcattagtagatct-

upper sequence: PP1S167_1V6.1 (Physcomitrella patens), 5'ss of exon 1
lower sequence: LOC_Os07g16970.2 (Oryza sativa), 5'ss of exon 1
TGGAGCCGGCACCATGGATGAAGAGTACGATGTGATTGTGCTGGGCACCGGGCTGAAGGAGTGCATCCTCAGTGGGCTACTCTCCGTGGATCGTCTCAAGgtgggtgggatcgcagatcgtggttgatctgtgtgactcgggcggtgtggcgtagctgccggctctctgggtgtagcgtggatttgt--ggtcggcgaggga
  |  |   | ||||||| |  |||||||| ||||| ||||| || || ||||| ||||||||||||||||| || || |||||||| ||||| ||||||||||      || |  |||    |   ||| | |  |||   |  | |  |       |   |||||  |     |   |   | |   || |  || |  |
CCGCCCGCCCGCCATGGACGTGGAGTACGACGTGATCGTGCTCGGGACGGGGCTCAAGGAGTGCATCCTCAGCGGCCTCCTCTCCGTCGATCGCCTCAAGgtggtctccttctcc-atctctctctctctctctctctctctctctctctctctctctctctctctcccgcc-cggatcgatctagctagggcatcgcgtca

upper sequence: PP1S167_1V6.1 (Physcomitrella patens), 5'ss of exon 1
lower sequence: LOC_Os05g23860.1 (Oryza sativa), 5'ss of exon 1
TGGAGC-CGGCACCATGGATGAAGAGTACGATGTGATTGTGCTGGGCACCGGGCTGAAGGAGTGCATCCTCAGTGGGCTACTCTCCGTGGATCGTCTCAAGgtgggtgggatc---gcagatcgtg-gttgatctgtgtgactcgggcggtgtggcgtagctgccggctctctgggtgtagcgtgg-atttgtggtcggcgaggga
 |  || || | |||||||||| |||||||| ||||| |||||||| || || || ||||||||||||||||| || || |||||||| ||  | ||||||||   |     |    ||   | |  |  |      |||    |  |||||   |  | | | || |  || |    | ||     | ||    ||  |      
-GCCGCTCGCCGCCATGGATGAGGAGTACGACGTGATCGTGCTGGGGACGGGCCTCAAGGAGTGCATCCTCAGCGGCCTCCTCTCCGTCGACGGCCTCAAGgtacctctctcctacccaatccatccgccgcctcccgtgctcggatcggtgctccccatc-gtcgtcgatccgtagatcgccccccacttcatctcatctg----

upper sequence: PP1S167_1V6.1 (Physcomitrella patens), 5'ss of exon 1
lower sequence: LOC_Os05g34540.1 (Oryza sativa), 5'ss of exon 1
TGGAGCCGGCACCATGGATGAAGAGTACGATGTGATTGTGCTGGGCACCGGGCTGAAGGAGTGCATCCTCAGTGGGCTACTCTCCGTGGATCGTCTCAAGgtgggtg-----ggatcgcagatcgtggttgatctgtgtgactcgggcggtgtggcg-tagctgccggctctctgggtgtagcgtggatttgtggtcggcgaggga
  |||| ||  |||||||||| |||||||| ||||| ||||| || || || || ||||||||||||||||| || || |||||||| ||  | ||||||||  |||     || || |   ||    |   ||| | |  |||   |  |    || | || |||||||  || | |   ||      | |  |||| ||     
ACGAGCAGGAGCCATGGATGAGGAGTACGACGTGATCGTGCTCGGGACGGGCCTCAAGGAGTGCATCCTCAGCGGCCTCCTCTCCGTCGACGGCCTCAAGgtacgtggctagggctctcgtctctctctctctctctctctctctctctctcacccgctcgccgccggcta-ctagcttccgcagatgctcgccgtcgccg-----

upper sequence: PP1S167_1V6.1 (Physcomitrella patens), 5'ss of exon 1
lower sequence: GRMZM2G047431_T01 (Zea mays), 5'ss of exon 1
TGGAGCCGGCACCATGGATGAAGAGTACGATGTGATTGTGCTGGGCACCGGGCTGAAGGAGTGCATCCTCAGTGGGCTACTCTCCGTGGATCGTCTCAAGgtgggtgggatcgc----agatcgtggttgatctgtgtgactcgggcggtgtggcgtagctgccggctctctgggtgtagcgtggatttgtggtcggcgaggga
  | ||  || |||||||||  |||||||| ||||| ||||||||||||||||| ||||||||||||||||| || || ||||| ||||| || ||||||||  ||       |    |   |    | ||||       |||   |  |  | ||| |  |||     |||      | || |   | |||||   | |    
CCGCGCGCGCGCCATGGATGTGGAGTACGACGTGATCGTGCTGGGCACCGGGCTCAAGGAGTGCATCCTCAGCGGCCTCCTCTCTGTGGACCGCCTCAAGgtacgttacgctactacgacgcctccatcgatcccctcctctctctccctccgtcgtcg--gcca--cttctaataagatcgcgccctggtggttatccatttt

upper sequence: PP1S167_1V6.1 (Physcomitrella patens), 5'ss of exon 1
lower sequence: GRMZM2G435373_T01 (Zea mays), 5'ss of exon 1
TGGAGCCGGC--ACCATGGATGAAGAGTACGATGTGATTGTGCTGGGCACCGGGCTGAAGGAGTGCATCCTCAGTGGGCTACTCTCCGTGGATCGTCTCAAGgtgggtgggatcgcagatcgtggttgatctgtgtgact--cgggcggtgtggcgtagctgccggctctctgggtgtagcgtggatttgtggtc-ggcgaggga
   |||| ||   |||||||||| |||||||| ||||| ||||| ||||| ||||| |||||||||||||||||||| || || ||||| ||  | ||||||||| |   |      |  ||   |       ||   |   ||  ||  |   ||| |||||||   ||| |  | | |    |  |  | ||| || |     
--CAGCCAGCCAGCCATGGATGAGGAGTACGACGTGATCGTGCTTGGCACGGGGCTCAAGGAGTGCATCCTCAGTGGTCTCCTTTCCGTCGACGGCCTCAAGgtgagcccgtcgatcgcccgctctcttctcctgcagccgccgctcgtagatccgtggctgccg-tgctcggattttgggtccgcgtaatagtccggtgctt--

upper sequence: PP1S167_1V6.1 (Physcomitrella patens), 5'ss of exon 1
lower sequence: GRMZM2G084440_T01 (Zea mays), 5'ss of exon 1
TGGAGCCGGCACCATGGATGAAGAGTACGATGTGATTGTGCTGGGCACCGGGCTGAAGGAGTGCATCCTCAGTGGGCTACTCTCCGTGGATCGTCTCAAGgtgggtgggatcgcagatcgtggttg---atctgtgtgac--tcgggcggtgtggcgtagctgccggctctctgggtgtagcgtggatttgtggtcggcgaggga
  |||   |    |||||||| |||||||| ||||| ||| |||| || ||||| |||||||||||| |||| || || |||||||| ||| | ||||||||  |   |   ||||  ||||  ||      ||  |||   |    |   ||   |   |  ||| |  | |  | |||   |     |||| | |   ||   
AAGAGAGAGAGAGATGGATGAGGAGTACGACGTGATCGTGTTGGGGACGGGGCTCAAGGAGTGCATCATCAGCGGCCTCCTCTCCGTCGATGGCCTCAAGgtctggccgggtgcagtgcgtgcgtgcgtgcatgcatgatgattcttcttcgttcggatccaaccgtcaatgtttgcgtaatataacaatgtgattgcacag---

upper sequence: PP1S167_1V6.1 (Physcomitrella patens), 5'ss of exon 1
lower sequence: GRMZM2G117507_T01 (Zea mays), 5'ss of exon 1
--TGGAGCCGGCACCATGGATGAAGAGTACGATGTGATTGTGCTGGGCACCGGGCTGAAGGAGTGCATCCTCAGTGGGCTACTCTCCGTGGATCGTCTCAAGgtgggtgggatcgcagatcgtggttgatctgtgtgactcgggcggtgtggcgtagctgccg-gctc----tctgggtgtagcgtggatttgtggtcggcgaggga
   | |||| ||  ||||||||| |||||||| ||||| || || ||||| ||||| ||||||||||||||||| || || ||||| || ||  | ||||||||  |   |  |||          | |     |   || |  || |    | ||||||||| ||||    | |||||   ||||  |  |  |||     | || 
CCGGCAGCCAGC--CATGGATGAGGAGTACGACGTGATCGTACTAGGCACGGGGCTCAAGGAGTGCATCCTCAGCGGTCTCCTCTCTGTAGACGGCCTCAAGgtaagcccgcccgctcgcttcccct-acagccgcagctagtacgatc---catagctgccgtgctcggaatttgggtcc-gcgtataagtccggtgcttcaaggt

upper sequence: PP1S167_1V6.1 (Physcomitrella patens), 5'ss of exon 1
lower sequence: GRMZM2G435373_T02 (Zea mays), 5'ss of exon 1
TGGAGCCGGCACCATGGATGAAGAGTACGATGTGATTGTGCTGGGCACCGGGCTGAAGGAGTGCATCCTCAGTGGGCTACTCTCCGTGGATCGTCTCAAGgtgggtgg-gatcgcagatcgtggttgatctgtgtgactcgggcggtgtggcgtagctgccggctc---tctgggtgtagcgtggatttgtggtcgg-cgaggga
             ||||| || |||||||| ||||| || |||||||| ||||| ||||||||||||||||| || || ||||| || ||  | ||||||||| |    || | |    ||            |  | |||| |       |  ||   |||  ||   ||||    |  |        ||   ||| ||  | |
-------------ATGGACGAGGAGTACGACGTGATCGTTCTGGGCACGGGGCTCAAGGAGTGCATCCTCAGCGGTCTCCTCTCTGTCGACGGCCTCAAGgtgagcaccgaccac---ccgcctcccggtaacggcaatcggacctcac--cccagtccccgagtccgatctgccactctcccccgcacgtacccggacgccgca

upper sequence: PP1S167_1V6.1 (Physcomitrella patens), 5'ss of exon 1
lower sequence: GLYMA08G07250.1 (Glycine max), 5'ss of exon 1
TGGAGCCGGCACCATGGATGAAGAGTACGATGTGATTGTGCTGGGCACCGGGCTGAAGGAGTGCATCCTCAGTGGGCTACTCTCCGTGGATCGTCTCAAGgtgggtgggatcgcagatcgtggttgatctgtgtgactcgggcggt--gtggcgtagctgccggctctctgggtgta-gcgtgg-atttgtggtcggcgaggga
             |||||||||||||||||||| |||||| ||||||| || || ||||| |||||||||||||| || ||||| || ||| | |||||||| | |    |      | |   ||  ||| |   |||       |   ||    |   |    || | ||| ||||   ||   ||||  |   | ||     
-------------ATGGATGAAGAGTACGATGTAATTGTGTTGGGCACAGGTCTCAAGGAATGCATCCTCAGTGGCCTTCTCTCAGTTGATGGCCTCAAGgttgtttttctatttagttggactttttctctaacacttcttttcttaatgttagattggttttctatttggttgtacatgtatcatttaagaatgtcgt----

upper sequence: PP1S167_1V6.1 (Physcomitrella patens), 5'ss of exon 1
lower sequence: GLYMA07G30050.1 (Glycine max), 5'ss of exon 1
TGGAGCCGGCACCATGGATGAAGAGTACGATGTGATTGTGCTGGGCACCGGGCTGAAGGAGTGCATCCTCAGTGGGCTACTCTCCGTGGATCGTCTCAAGgtgggtgggatcgcagatcgtggttg--atctgtgtgactcgg-gcggtgtggcgtagctgccggctctctgggtgtagcgtggatttgtggtcggcgaggga
             |||||||||||||||||||| |||||| ||||||| || || ||||| |||||||||||||| || ||||| || ||| | |||||||| | |    || |   ||  |  |   | |  |   | ||   |   |      | | ||     | | |   |    | |    || |  |    ||    
-------------ATGGATGAAGAGTACGATGTAATTGTGTTGGGCACAGGTCTCAAGGAATGCATCCTCAGTGGCCTTCTCTCAGTTGATGGCCTCAAGgtagtttaattctcttctctcgagtcccaacaatcgaattcattgtttttctatttggttgtaatttttttctctaacacttcttattttaatgttagat---

upper sequence: PP1S167_1V6.1 (Physcomitrella patens), 5'ss of exon 1
lower sequence: GLYMA05G30140.3 (Glycine max), 5'ss of exon 1
TGGAGCCGGC-ACCATGGATGAAGAGTACGATGTGATTGTGCTGGGCACCGGGCTGAAGGAGTGCATCCTCAGTGGGCTACTCTCCGTGGATCGTCTCAAGgtg--ggtgggatcgcagatcgtggttgatctgtgtgactcgggcggtgtgg-cgtagctgccggctctctgggtgtagcgtggatttgtggtcggcgaggga
  || |   | | ||||||||| |||||||||||||| ||| ||||||| || || ||||||||||| ||||| || || |||||||| ||| | ||||||||     |   ||     |   | |||  ||| |     ||   || |     | | ||   |   |  ||   | | |   |  |  |              
-AGATCGATCGAACATGGATGAGGAGTACGATGTGATCGTGTTGGGCACGGGTCTCAAGGAGTGCATTCTCAGCGGTCTTCTCTCCGTCGATGGCCTCAAGgtactatttccattcatcactttcgtttttcttttcttttcaatcgatccaatcctcgcatgctaattgctatttcttgttcgattcag--------------

upper sequence: PP1S167_1V6.1 (Physcomitrella patens), 5'ss of exon 1
lower sequence: GLYMA08G13300.3 (Glycine max), 5'ss of exon 1
TGGAGCCGGC-ACCATGGATGAAGAGTACGATGTGATTGTGCTGGGCACCGGGCTGAAGGAGTGCATCCTCAGTGGGCTACTCTCCGTGGATCGTCTCAAGgtgggtgggatcgcagatcgtggttgatctgtgtgactcgggcggtgtggcgtagctgccggctctctgggtgtagcgtggatttgtggtcggcgaggga
  || |   | | ||||||||| |||||||||||||| ||| ||||||| || || ||||||||||| ||||| || || |||||||| ||| | ||||||||  ||           || |   |   || | |   ||      | |    ||| | ||   |||||     ||      |||| | ||  |     | 
-AGATCGATCGAACATGGATGAGGAGTACGATGTGATCGTGTTGGGCACGGGTCTCAAGGAGTGCATTCTCAGCGGTCTTCTCTCCGTCGATGGCCTCAAGgtacgtac---------tcatcactttcctatttctttcattttcttttctatagat-ccaattctctcatgctaattcctatttcttgttcgattcag-

upper sequence: PP1S167_1V6.1 (Physcomitrella patens), 5'ss of exon 1
lower sequence: GLYMA07G24480.1 (Glycine max), 5'ss of exon 1
TGGAGCCGGCACCATGGATGAAGAGTACGATGTGATTGTGCTGGGCACCGGGCTGAAGGAGTGCATCCTCAGTGGGCTACTCTCCGTGGATCGTCTCAAGgtg---ggtgggatcgcagatcgtggttgatctgtgtgactcgggcggtgtggcgtagctgccggctctctgggtgtagcgtggatttgtggtcggcgaggga
             |||||||| | || ||||||||| ||| ||||||| || || ||||||||||| ||||| || || ||||| || ||| | ||||||||        |  ||  |  || |   |  ||| |   |      |  | |  || |  ||     || ||   ||| |   |  |  |              
-------------ATGGATGAGGGGTGCGATGTGATCGTGTTGGGCACGGGTCTCAAGGAGTGCATTCTCAGCGGTCTTCTCTCTGTCGATGGCCTCAAGgtactcatcagtttcctatttctttaattttcttttcaatagatccaat-tctcgca--tgttaattc-ctatttgttgttcgattcag--------------

upper sequence: PP1S167_1V6.1 (Physcomitrella patens), 5'ss of exon 1
lower sequence: AT5G09550.1 (Arabidopsis thaliana), 5'ss of exon 1
-TGGAGCCGGCACCATGGATGAAGAGTACGATGTGATTGTGCTGGGCACCGGGCTGAAGGAGTGCATCCTCAGTGGGCTACTCTCCGTGGATCGTCTCAAGgtgggtgggatcgcagatcgtggttgatctgtgtgactcgggcggtgtggcgtagctgccggctctctgggtgtagcgt-ggatttgtggtcggcgaggga--------
 | ||      |  |||||||||||||| ||||||||||| || || || || || |||||||| ||||| ||||| || ||||| || ||| | ||||||||   |     |     || |  ||    | |   | |     | | | | | | |         ||  | |  ||| |  | ||| || |  |     |         
ATCGA-TTACAATAATGGATGAAGAGTATGATGTGATTGTCCTTGGGACTGGTCTTAAGGAGTGTATCCTTAGTGGCCTCCTCTCTGTCGATGGCCTCAAGgt---tttctccttgattcataattttcttttaccattaaattgtttttgtgcatca------catccagataaagctttaggtttatgtttagttttcgcttttgttt

upper sequence: PP1S167_1V6.1 (Physcomitrella patens), 5'ss of exon 1
lower sequence: Vv05s0094g01550.t01 (Vitis vinifera), 5'ss of exon 1
TGGAGCCGGCACCATGGATGAAGAGTACGATGTGATTGTGCTGGGCACCGGGCTGAAGGAGTGCATCCTCAGTGGGCTACTCTCCGTGGATCGTCTCAAGgtgggtgggatcgcagatc--gtggttgatctgtgtgactcgggcggtgtggcgtagctgccggctctctgggtgtagcgtggatttgtggtcggcgaggga--
      |   | ||||||||||||||||||||| || ||| |||||||||| || ||||| |||||||||||||| || |||||||| ||  | ||||||||        |  |  ||    |  ||  ||    |  |   ||   |  |  ||   |   ||| ||||    |   | ||   ||||  ||| | |      
CTCCCTCAAAATCATGGATGAAGAGTACGATGTTATAGTGTTGGGCACCGGTCTCAAGGAATGCATCCTCAGTGGTCTTCTCTCCGTAGACGGCCTCAAGgtcttcatcctttctaattcactcatttttcaacttctccttggaaataagaggt--tttttggccctctactggagtcatg--cttgtaatcgactatttttg

upper sequence: PP1S167_1V6.1 (Physcomitrella patens), 5'ss of exon 1
lower sequence: EDP02072 (Chlamydomonas reinhardtii), 5'ss of exon 2
TGGAGCCGGCACCATGGATGAAGAGTACGATGTGATTGTGCTGGGCACCGGGCTGAAGGAGTGCATCCTCAGTGGGCTACTCTCCGTGGATCGTCTCAAGgtgggtgggatcgcagatcgtggttgatctgtgtgactcgggcggtgtggcgtagctgccggctctctgggtgtagcgtggatttgtggtcggcgaggga
                 | || ||||| || ||||| ||||||||||| || ||||||||||||||| ||||||| || || || |||||       ||||||   |||| |       | |   ||    ||  ||  || | |  |  | | ||   | |  | ||     | ||      |||  |           
----------------AACGAGGAGTATGACGTGATCGTGCTGGGCACGGGTCTGAAGGAGTGCATCATCAGTGGCCTGCTGTCGGTGGACAAGAAGAAGgtg--cgggacctagacatgcgcgcgaatgctgcaaccgggcctgcttttcttcgcgcgctggccgctcaccatcgcaacctgttgcag-----------

upper sequence: PP1S167_1V6.1 (Physcomitrella patens), 5'ss of exon 1
lower sequence: EFJ11673 (Selaginella moellendorffii), 5'ss of exon 1
--TGGAGCCGGCACCATGGATGAAGAGTACGATGTGATTGTGCTGGGCACCGGGCTGAAGGAGTGCATCCTCAGTGGGCTACTCTCCGTGGATCGTCTCAAGgtgggtgggatcgcagatcgtggttgatctgtgtgactcgggcggtgtggcgtagctgccggctctctgggtgtagcgtggatttgtggtcggcgaggga
  |   |   || |||||||||| |||||||| || ||||||||||| || || || ||||||||||||||||| ||||| || || |||||||||||||||||||||    |    |||||  ||||       |  |||  || |                                                       
GTTTTGGT--GCGCCATGGATGAGGAGTACGACGTCATTGTGCTGGGGACGGGTCTCAAGGAGTGCATCCTCAGCGGGCTGCTGTCGGTGGATCGTCTCAAGgtgggtt--tttctcgatcggagttggaagacatctctctcgcag-------------------------------------------------------

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|100364022|gb|BY966287.1|BY966287
EST:     GGCTGAAGGAGTGCATCCTCAGTGGGCTACTCTCCGTGGATCGTCTCAAG                         GTGCTTCATATGGACAGGAATGACTATTACGGCGGAGCTGCTGCATCTTTG
genomic: GGCTGAAGGAGTGCATCCTCAGTGGGCTACTCTCCGTGGATCGTCTCAAGgtgggtggga ... tcggtggcagGTGCTTCATATGGACAGGAATGACTATTACGGCGGAGCTGCTGCATCTTTG
EST: gi|18348886|gb|BJ180935.1|BJ180935
EST:     GGCTGAAGGAGTGCATCCTCAGTGGGCTACTCTCCGTGGATCGTCTCAAG                         GTGCTTCATATGGACAGGAATGACTATTACGGCGGAGCTGCTGCATCTTTG
genomic: GGCTGAAGGAGTGCATCCTCAGTGGGCTACTCTCCGTGGATCGTCTCAAGgtgggtggga ... tcggtggcagGTGCTTCATATGGACAGGAATGACTATTACGGCGGAGCTGCTGCATCTTTG
EST: gi|162239319|gb|FC415405.1|FC415405
EST:     GGCTGAAGGAGTGCATCCTCAGTGGGCTACTCTCCGTGGATCGTCTCAAG                         GTGCTTCATATGGACAGGAATGACTATTACGGCGGAGCTGCTGCATCTTTG
genomic: GGCTGAAGGAGTGCATCCTCAGTGGGCTACTCTCCGTGGATCGTCTCAAGgtgggtggga ... tcggtggcagGTGCTTCATATGGACAGGAATGACTATTACGGCGGAGCTGCTGCATCTTTG
EST: gi|100411963|gb|BY992426.1|BY992426
EST:     GGCTGAAGGAGTGCATCCTCAGTGGGCTACTCTCCGTGGATCGTCTCAAG                         GTGCTTCGTATGGACAGGAATGACTATTACGGCGGAGCTGCTGCATCTTTG
genomic: GGCTGAAGGAGTGCATCCTCAGTGGGCTACTCTCCGTGGATCGTCTCAAGgtgggtggga ... tcggtggcagGTGCTTCATATGGACAGGAATGACTATTACGGCGGAGCTGCTGCATCTTTG
EST: gi|100351814|gb|BY964563.1|BY964563
EST:     GGCTGAAGGAGTGCATCCTCAGTGGGCTACTCTCCGTGGATCGTCTCAAG                         GTGCTTCATATGGACAGGAATGACTATTACGGCGGAGCTGCTGCATCTTTG
genomic: GGCTGAAGGAGTGCATCCTCAGTGGGCTACTCTCCGTGGATCGTCTCAAGgtgggtggga ... tcggtggcagGTGCTTCATATGGACAGGAATGACTATTACGGCGGAGCTGCTGCATCTTTG
EST: gi|67718774|gb|BJ969033.1|BJ969033
EST:     GGCTGAAGGAGTGCATCCTCAGTGGGCTACTCTCCGTGGATCGTCTCAAG                         GTGCTTCATATGGACAGGAATGACTATTACGGCGGAGCTGCTGCATCTTTG
genomic: GGCTGAAGGAGTGCATCCTCAGTGGGCTACTCTCCGTGGATCGTCTCAAGgtgggtggga ... tcggtggcagGTGCTTCATATGGACAGGAATGACTATTACGGCGGAGCTGCTGCATCTTTG
EST: gi|208391457|gb|DC937605.1|DC937605
EST:     GGCTGAAGGAGTGCATCCTCAGTGGGCTACTCTCCGTGGATCGTCTCAAG                         GTGCTTCATATGGACAGGAATGACTATTACGGCGGAGCTGCTGCATCTTTG
genomic: GGCTGAAGGAGTGCATCCTCAGTGGGCTACTCTCCGTGGATCGTCTCAAGgtgggtggga ... tcggtggcagGTGCTTCATATGGACAGGAATGACTATTACGGCGGAGCTGCTGCATCTTTG
EST: gi|100386544|gb|BY951340.1|BY951340
EST:     GGCTGAAGGAGTGCATCCTCAGTGGGCTACTCTCCGTGGATCGTCTCAAG                         GTGCTTCATATGGACAGGAATGACTATTACGGCGGAGCTGCTGCATCTTTG
genomic: GGCTGAAGGAGTGCATCCTCAGTGGGCTACTCTCCGTGGATCGTCTCAAGgtgggtggga ... tcggtggcagGTGCTTCATATGGACAGGAATGACTATTACGGCGGAGCTGCTGCATCTTTG
EST: gi|208388870|gb|DC932898.1|DC932898
EST:     GGCTGAAGGAGTGCATCCTCAGTGGGCTACTCTCCGTGGATCGTCTCAAG                         GTGCTTCATATGGACAGGAATGACTATTACGGCGGAGCTGCTGCATCTTTG
genomic: GGCTGAAGGAGTGCATCCTCAGTGGGCTACTCTCCGTGGATCGTCTCAAGgtgggtggga ... tcggtggcagGTGCTTCATATGGACAGGAATGACTATTACGGCGGAGCTGCTGCATCTTTG
EST: gi|100420810|gb|BY993515.1|BY993515
EST:     GGCTGAAGGAGTGCATCCTCAGTGGGCTACTCTCCGTGGATCGTCTCAAG                         GTGCTTCATATGGACAGGAATGACTATTACGGCGGAGCTGCTGCATCTTTG
genomic: GGCTGAAGGAGTGCATCCTCAGTGGGCTACTCTCCGTGGATCGTCTCAAGgtgggtggga ... tcggtggcagGTGCTTCATATGGACAGGAATGACTATTACGGCGGAGCTGCTGCATCTTTG
EST: gi|67572040|gb|BJ944864.1|BJ944864
EST:     GGCTGAAGGAGTGCATCCTCAGTGGGCTACTCTCCGTGGATCGTCTCAAG                         GTGCTTCATATGGACAGGAATGACTATTACGGCGGAGCTGCTGCATCTTTG
genomic: GGCTGAAGGAGTGCATCCTCAGTGGGCTACTCTCCGTGGATCGTCTCAAGgtgggtggga ... tcggtggcagGTGCTTCATATGGACAGGAATGACTATTACGGCGGAGCTGCTGCATCTTTG
EST: gi|18349520|gb|BJ181570.1|BJ181570
EST:     GGCTGAAGGAGTGCATCCTCAGTGGGCTACTCTCCGTGGATCGTCTCAAG                         GTGCTTCATATGGACAGGAATGACTATTACGGCGGAGCTGCTGCATCTTTG
genomic: GGCTGAAGGAGTGCATCCTCAGTGGGCTACTCTCCGTGGATCGTCTCAAGgtgggtggga ... tcggtggcagGTGCTTCATATGGACAGGAATGACTATTACGGCGGAGCTGCTGCATCTTTG
EST: gi|100432371|gb|BY960451.1|BY960451
EST:     GGCTGAAGGAGTGCATCCTCAGTGGGCTACTCTCCGTGGATCGTCTCAAG                         GTGCTTCATATGGACAGGAATGACTATTACGGCGGAGCTGCTGCATCTTTG
genomic: GGCTGAAGGAGTGCATCCTCAGTGGGCTACTCTCCGTGGATCGTCTCAAGgtgggtggga ... tcggtggcagGTGCTTCATATGGACAGGAATGACTATTACGGCGGAGCTGCTGCATCTTTG
EST: gi|162202240|gb|FC378096.1|FC378096
EST:     GGCTGAAGGAGTGCATCCTCAGTGGGCTACTCTCCGTGGATCGTCTCAAG                         GTGCTTCATATGGACAGGAATGACTATTACGGCGGAGCTGCTGCATCTTTG
genomic: GGCTGAAGGAGTGCATCCTCAGTGGGCTACTCTCCGTGGATCGTCTCAAGgtgggtggga ... tcggtggcagGTGCTTCATATGGACAGGAATGACTATTACGGCGGAGCTGCTGCATCTTTG
EST: gi|100390164|gb|BY989244.1|BY989244
EST:     GGCTGAAGGAGTGCATCCTCAGTGGGCTACTCTCCGTGGATCGTCTCAAG                         GTGCTTCATATGGACAGGAATGACTATTACGGCGGAGCTGCTGCATCTTTG
genomic: GGCTGAAGGAGTGCATCCTCAGTGGGCTACTCTCCGTGGATCGTCTCAAGgtgggtggga ... tcggtggcagGTGCTTCATATGGACAGGAATGACTATTACGGCGGAGCTGCTGCATCTTTG
EST: gi|208400746|gb|DC904924.1|DC904924
EST:     GGCTGAAGGAGTGCATCCTCAGTGGGCTACTCTCCGTGGATCGTCTCAAG                         GTGCTTCATATGGACAGGAATGACTATTACGGCGGAGCTGCTGCATCTTTG
genomic: GGCTGAAGGAGTGCATCCTCAGTGGGCTACTCTCCGTGGATCGTCTCAAGgtgggtggga ... tcggtggcagGTGCTTCATATGGACAGGAATGACTATTACGGCGGAGCTGCTGCATCTTTG
EST: gi|100410627|gb|BY992191.1|BY992191
EST:     GGCTGAAGGAGTGCATCCTCAGTGGGCTACTCTCCGTGGATCGTCTCAAG                         GTGCTTCGTATGGACAGGAATGACTATTACGGCGGAGCTGCTGCATCTTTG
genomic: GGCTGAAGGAGTGCATCCTCAGTGGGCTACTCTCCGTGGATCGTCTCAAGgtgggtggga ... tcggtggcagGTGCTTCATATGGACAGGAATGACTATTACGGCGGAGCTGCTGCATCTTTG
EST: gi|208359628|gb|DC934615.1|DC934615
EST:     GGCTGAAGGAGTGCATCCTCAGTGGGCTACTCTCCGTGGATCGTCTCAAG                         GTGCTTCATATGGACAGGAATGACTATTACGGCGGAGCTGCTGCATCTTTG
genomic: GGCTGAAGGAGTGCATCCTCAGTGGGCTACTCTCCGTGGATCGTCTCAAGgtgggtggga ... tcggtggcagGTGCTTCATATGGACAGGAATGACTATTACGGCGGAGCTGCTGCATCTTTG
EST: gi|67704562|gb|BJ964795.1|BJ964795
EST:     GGCTGAAGGAGTGCATCCTCAGTGGGCTACTCTCCGTGGATCGTCTCAAG                         GTGCTTCATATGGACAGGAATGACTATTACGGCGGAGCTGCTGCATCTTTG
genomic: GGCTGAAGGAGTGCATCCTCAGTGGGCTACTCTCCGTGGATCGTCTCAAGgtgggtggga ... tcggtggcagGTGCTTCATATGGACAGGAATGACTATTACGGCGGAGCTGCTGCATCTTTG
EST: gi|162194881|gb|FC368998.1|FC368998
EST:     GGCTGAAGGAGTGCATCCTCAGTGGGCTACTCTCCGTGGATCGTCTCAAG                         GTGCTTCATATGGACAGGAATGACTATTACGGCGGAGCTGCTGCATCTTTG
genomic: GGCTGAAGGAGTGCATCCTCAGTGGGCTACTCTCCGTGGATCGTCTCAAGgtgggtggga ... tcggtggcagGTGCTTCATATGGACAGGAATGACTATTACGGCGGAGCTGCTGCATCTTTG

RNA-Seq data


 ATGC   Supported by RNA-Seq exonic block that spans over the splice site

 atgs   Truncated intron sequence

Each block is as long as the maximal overhang of any read spanning the junction.
The score is the number of alignments spanning the junction.


Found data for 1 RNA-Seqlibrary.


Block sizes: 27 (upstream exon), 35 (downstream exon)
Score: 31

TGGAGCCGGCACCATGGATGAAGAGTACGATGTGATTGTGCTGGGCACCGGGCTGAAGGAGTGCATCCTCAGTGGGCTACTCTCCGTGGATCGTCTCAAGgtgggtggga ... tcggtggcagGTGCTTCATATGGACAGGAATGACTATTACGGCGGAGCTGCTGCATCTTTGAACTTGAACCAG




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Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
TGGAGCCGGCACCATGGATGAAGAGTACGATGTGATTGTGCTGGGCACCGGGCTGAAGGAGTGCATCCTCAGTGGGCTACTCTCCGTGGATCGTCTCAAGgtgggtgggatcgcagatcgtggttgatctgtgtgactcgggcggtgtggcgtagctgccggctctctgggtgtagcgtggatttgtggtcggcgaggga

- - - - - - - - - - - - - - - - - - - - - - - - - - CTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - -  AAGGAG