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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CATGGATATGCTCGGGCCAAGTCTCCGGGATGTTTGGAACTCTTCGGGGTCAAGCGCAAgtatttagggcagctcgttctgattgagcag

Basic information

species Physcomitrella patens
transcript PP1S1655_2V6.1
intron # 1
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: PP1S1655_2V6.1 (Physcomitrella patens), 5'ss of exon 1
lower sequence: AT5G18190.1 (Arabidopsis thaliana), 5'ss of exon 6
--CATGGATATGCTCGGGCCAAGTCTCCGGGATGTTTGGAACTCTTCGGGGTCAAGCGCAAgtattt----------agggcagctcgttctgattgagcag-----------------------------------
  |||||| ||||| || || |||||| ||||||||||||| ||||||||| ||| || ||| | |           |   ||  || |||||||||                                        
GTCATGGACATGCTTGGTCCGAGTCTCTGGGATGTTTGGAATTCTTCGGGG-CAATCgtaagcactcttctcctctcaccacacttccttctgattgcaagattcttgatttgattcatgttcgtgtcatgtggcag