1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
ACGAGGAGTTTCTTTGGGTGCTTTGGATCGAGGAGGATTTGCAGTCATGGGGGAGCTATACTTGGATAAGCACGTGGCTTACATTAAATCTCTCGACAAGgtgcgcatcgcttagccctctagcgacgaatgtcttggatttcgggttctgagtggtgtgtgtgtttctgggtttttagaatctttcttgtttgaggagc...
species | Physcomitrella patens |
transcript | PP1S163_87V6.1 |
intron # | 1 |
splice site | 5' |
intron type | U2 |
EST: GGGAGCTATACTTGGATAAGCACGTGGCTTACATTAAATCTCTCGACAAG AAGAAAGATTTCGATGCGGTGGTGATGGAGCACTTACGCATGAGCGGAGCGEST: gi|67578004|gb|BJ950171.1|BJ950171
genomic: GGGAGCTATACTTGGATAAGCACGTGGCTTACATTAAATCTCTCGACAAGgtgcgcatcg ... gtttgtgcagAAGAAAGATTTCGATGCGGTGGTGATGGAGCACTTACGCATGAGCGGAGCG
EST: GGGAGCTATACTTGGATAAGCACGTGGCTTACATTAAATCTCTCGACAAG AAGAAAGATTTCGATGCGGTGGTGATGGAGCACTTACGCATGAGCGGAGCGEST: gi|208360087|gb|DC934948.1|DC934948
genomic: GGGAGCTATACTTGGATAAGCACGTGGCTTACATTAAATCTCTCGACAAGgtgcgcatcg ... gtttgtgcagAAGAAAGATTTCGATGCGGTGGTGATGGAGCACTTACGCATGAGCGGAGCG
EST: GGGAGCTATACTTGGATAAGCACGTGGCTTACATTAAATCTCTCGACAAG AAGAAAGATTTCGATGCGGTGGTGATGGAGCACTTACGCATGAGCGGAGCGEST: gi|18330262|gb|BJ162268.1|BJ162268
genomic: GGGAGCTATACTTGGATAAGCACGTGGCTTACATTAAATCTCTCGACAAGgtgcgcatcg ... gtttgtgcagAAGAAAGATTTCGATGCGGTGGTGATGGAGCACTTACGCATGAGCGGAGCG
EST: GGGAGCTATACTTGGATAAGCACGTGGCTTACATTAAATCTCTCGACAAG AAGAAAGATTTCGATGCGGTGGTGATGGAGCACTTACGCATGAGCGGAGCGEST: gi|208389899|gb|DC937730.1|DC937730
genomic: GGGAGCTATACTTGGATAAGCACGTGGCTTACATTAAATCTCTCGACAAGgtgcgcatcg ... gtttgtgcagAAGAAAGATTTCGATGCGGTGGTGATGGAGCACTTACGCATGAGCGGAGCG
EST: GGGAGCTATACTTGGATAAGCACGTGGCTTACATTAAATCTCTCGACAAG AAGAAAGATTTCGATGCGGTGGTGATGGAGCACTTACGCATGAGCGGAGCGEST: gi|208375311|gb|DC940449.1|DC940449
genomic: GGGAGCTATACTTGGATAAGCACGTGGCTTACATTAAATCTCTCGACAAGgtgcgcatcg ... gtttgtgcagAAGAAAGATTTCGATGCGGTGGTGATGGAGCACTTACGCATGAGCGGAGCG
EST: GGGAGCTATACTTGGATAAGCACGTGGCTTACATTAAATCTCTCGACAAG AAGAAAGATTTCGATGCGGTGGTGATGGAGCACTTACGCATGAGCGGAGCGEST: gi|18350028|gb|BJ182079.1|BJ182079
genomic: GGGAGCTATACTTGGATAAGCACGTGGCTTACATTAAATCTCTCGACAAGgtgcgcatcg ... gtttgtgcagAAGAAAGATTTCGATGCGGTGGTGATGGAGCACTTACGCATGAGCGGAGCG
EST: GGGAGCTATACTTGGATAAGCACGTGGCTTACATTAAATCTCTCGACAAG AAGAAAGATTTCGATGCGGTGGTGATGGAGCACTTACGCATGAGCGGAGCG
genomic: GGGAGCTATACTTGGATAAGCACGTGGCTTACATTAAATCTCTCGACAAGgtgcgcatcg ... gtttgtgcagAAGAAAGATTTCGATGCGGTGGTGATGGAGCACTTACGCATGAGCGGAGCG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ACGAGGAGTTTCTTTGGGTGCTTTGGATCGAGGAGGATTTGCAGTCATGGGGGAGCTATACTTGGATAAGCACGTGGCTTACATTAAATCTCTCGACAAGgtgcgcatcgcttagccctctagcgacgaatgtcttggatttcgggttctgagtggtgtgtgtgtttctgggtttttagaatctttcttgtttgaggagc
- - - - - - - - - - - - - - - - - - - - - - - - - GGAGCT