1 5' 3' | 2 5' 3' | 3 5' 3' |
GAAGTCCGCGGAGCTCTCCGCTGCGAAGACCCGGAACGCAAAGAATCGTACTCTGATCTTCAAGCGTGCCCAGCAGTATCAGGAGGAGTACGAGAAGCAGgtgaggtggccttgcgaatggactaggttttttctttctttgctcgataattcgcgtccttaatcattcgtggaagttgcagtgataatccgtcgatcat...
species | Physcomitrella patens |
transcript | PP1S163_37V6.1 |
intron # | 1 |
splice site | 5' |
intron type | U2 |
EST: CTCTGATCTTCAAGCGTGCCCAGCAGTATCAGGAGGAGTACGAGAAGCAG GAGAAGGAAATTATTAGTTTGAAGAGGGAGGCTAAGCTCAAGGGTGGATTCEST: gi|67724620|gb|BJ974879.1|BJ974879
genomic: CTCTGATCTTCAAGCGTGCCCAGCAGTATCAGGAGGAGTACGAGAAGCAGgtgaggtggc ... tcatatgcagGAGAAGGAAATTATTAGTTTGAAGAGGGAGGCTAAGCTCAAGGGTGGATTC
EST: CTCTGATCTTCAAGCGTGCCCAGCAGTATCAGGAGGAGTACGAGAAGCAG GAGAAGGAAATTATTAGTTTGAAGAGGGAGGCTAAGCTCAAGGGTGGATTCEST: gi|67717640|gb|BJ967899.1|BJ967899
genomic: CTCTGATCTTCAAGCGTGCCCAGCAGTATCAGGAGGAGTACGAGAAGCAGgtgaggtggc ... tcatatgcagGAGAAGGAAATTATTAGTTTGAAGAGGGAGGCTAAGCTCAAGGGTGGATTC
EST: CTCTGATCTTCAAGCGTGCCCAGCAGTATCAGGAGGAGTACGAGAAGCAG GAGAAGGAAATTATTAGTTTGAAGAGGGAGGCTAAGCTCAAGGGTGGATTCEST: gi|162280069|gb|FC456463.1|FC456463
genomic: CTCTGATCTTCAAGCGTGCCCAGCAGTATCAGGAGGAGTACGAGAAGCAGgtgaggtggc ... tcatatgcagGAGAAGGAAATTATTAGTTTGAAGAGGGAGGCTAAGCTCAAGGGTGGATTC
EST: CTCTGATCTTCAAGCGTGCCCAGCAGTATCAGGAGGAGTACGAGAAGCAG GAGAAGGAAATTATTAGTTTGAAGAGGGAGGCTAAGCTCAAGGGTGGATTCEST: gi|67712911|gb|BJ966360.1|BJ966360
genomic: CTCTGATCTTCAAGCGTGCCCAGCAGTATCAGGAGGAGTACGAGAAGCAGgtgaggtggc ... tcatatgcagGAGAAGGAAATTATTAGTTTGAAGAGGGAGGCTAAGCTCAAGGGTGGATTC
EST: CTCTGATCTTCAAGCGTGCCCAGCAGTATCAGGAGGAGTACGAGAAGCAG GAGAAGGAAATTATTAGTTTGAAGAGGGAGGCTAAGCTCAAGGGTGGATTCEST: gi|162280068|gb|FC456462.1|FC456462
genomic: CTCTGATCTTCAAGCGTGCCCAGCAGTATCAGGAGGAGTACGAGAAGCAGgtgaggtggc ... tcatatgcagGAGAAGGAAATTATTAGTTTGAAGAGGGAGGCTAAGCTCAAGGGTGGATTC
EST: TCAAGCGTGCCCAGCAGTATCAGGAGGAGTACGAGAAGCAG GAGAAGGAAATTATTAGTTTGAAGAGGGAGGTTAAGCTCAAGGGTGGATTTEST: gi|67578517|gb|BJ950684.1|BJ950684
genomic: TCAAGCGTGCCCAGCAGTATCAGGAGGAGTACGAGAAGCAGgtgaggtggc ... tcatatgcagGAGAAGGAAATTATTAGTTTGAAGAGGGAGGCTAAGCTCAAGGGTGGATTC
EST: CTCTGATCTTCAAGCGTGCCCAGCAGTATCAGGAGGAGTACGAGAAGCAG GAGAAGGAAATTATTAGTTTGAAGAGGGAGGCTAAGCTCAAGGGTGGATTCEST: gi|67568873|gb|BJ941697.1|BJ941697
genomic: CTCTGATCTTCAAGCGTGCCCAGCAGTATCAGGAGGAGTACGAGAAGCAGgtgaggtggc ... tcatatgcagGAGAAGGAAATTATTAGTTTGAAGAGGGAGGCTAAGCTCAAGGGTGGATTC
EST: CTCTGATCTTCAAGCGTGCCCAGCAGTATCAGGAGGAGTACGAGAAGCAG GAGAAGGAAATTATTAGTTTGAAGAGGGAGGCTAAGCTCAAGGGTGGATTCEST: gi|67726154|gb|BJ976413.1|BJ976413
genomic: CTCTGATCTTCAAGCGTGCCCAGCAGTATCAGGAGGAGTACGAGAAGCAGgtgaggtggc ... tcatatgcagGAGAAGGAAATTATTAGTTTGAAGAGGGAGGCTAAGCTCAAGGGTGGATTC
EST: CTCTGATCTTCAAGCGTGCCCAGCAGTATCAGGAGGAGTACGAGAAGCAG GAGAAGGAAATTATTAGTTTGAAGAGGGAGGCTAAGCTCAAGGGTGGATTCEST: gi|67694157|gb|BJ954390.1|BJ954390
genomic: CTCTGATCTTCAAGCGTGCCCAGCAGTATCAGGAGGAGTACGAGAAGCAGgtgaggtggc ... tcatatgcagGAGAAGGAAATTATTAGTTTGAAGAGGGAGGCTAAGCTCAAGGGTGGATTC
EST: CTCTGATCTTCAAGCGTGCCCAGCAGTATCAGGAGGAGTACGAGAAGCAG GAGAAGGAAATTATTAGTTTGAAGAGGGAGGCTAAGCTCAAGGGTGGATTC
genomic: CTCTGATCTTCAAGCGTGCCCAGCAGTATCAGGAGGAGTACGAGAAGCAGgtgaggtggc ... tcatatgcagGAGAAGGAAATTATTAGTTTGAAGAGGGAGGCTAAGCTCAAGGGTGGATTC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GAAGTCCGCGGAGCTCTCCGCTGCGAAGACCCGGAACGCAAAGAATCGTACTCTGATCTTCAAGCGTGCCCAGCAGTATCAGGAGGAGTACGAGAAGCAGgtgaggtggccttgcgaatggactaggttttttctttctttgctcgataattcgcgtccttaatcattcgtggaagttgcagtgataatccgtcgatcat
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGC