1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
ATCGAAAGAGGAGGGGAGCACGATGGCCAGTGCGGAACAGTTGGTTCTGGAACTTATTGTGCCTGAGCAGCGGGAGAATGCACTCCTTGATCTTTCCAAGgtatcatcctttctaaggaatgagttagggcactagctagaatttcccaacggagtgatcaagcgtgacgatgatcgttgtgtagagtgtttgcaagtgt...
species | Physcomitrella patens |
transcript | PP1S15_262V6.1 |
intron # | 1 |
splice site | 5' |
intron type | U2 |
EST: AACTTATTGTGCCTGAGCAGCGGGAGAATGCACTCCTTGATCTTTCCAAG AAAAGAGAAGCCTTTCCAGACCTGGCTCCAATCCTCTGGCACTCATGCGGCEST: gi|18356452|gb|BJ188511.1|BJ188511
genomic: AACTTATTGTGCCTGAGCAGCGGGAGAATGCACTCCTTGATCTTTCCAAGgtatcatcct ... caaattgcagAAAAGAGAAGCCTTTCCAGACCTGGCTCCAATCCTCTGGCACTCATGCGGC
EST: AACTTATTGTGCCTGAGCAGCGGGAGAATGCACTCCTTGATCTTTCCAAG AAAAGAGAAGCCTTTCCAGACCTGGCTCCAATCCTCTGGCACTCATGCGGCEST: gi|208348349|gb|DC905549.1|DC905549
genomic: AACTTATTGTGCCTGAGCAGCGGGAGAATGCACTCCTTGATCTTTCCAAGgtatcatcct ... caaattgcagAAAAGAGAAGCCTTTCCAGACCTGGCTCCAATCCTCTGGCACTCATGCGGC
EST: AACTTATTGTGCCTGAGCAGCGGGAGAATGCACTCCTTGATCTTTCCAAG AAAANANAAGCCTTTCCAGACCTGGCTCCAATCCTCTGGCACTCATGCNGCEST: gi|18369560|gb|BJ201648.1|BJ201648
genomic: AACTTATTGTGCCTGAGCAGCGGGAGAATGCACTCCTTGATCTTTCCAAGgtatcatcct ... caaattgcagAAAAGAGAAGCCTTTCCAGACCTGGCTCCAATCCTCTGGCACTCATGCGGC
EST: AACTTATTGTGCCTGAGCAGCGGGAGAATGCACTCCTTGATCTTTCCAAG AAAAGAGAAGCCTTTCCAGACCTGGCTCCAATCCTCTGGCACTCATGCGGCEST: gi|100356823|gb|BY965298.1|BY965298
genomic: AACTTATTGTGCCTGAGCAGCGGGAGAATGCACTCCTTGATCTTTCCAAGgtatcatcct ... caaattgcagAAAAGAGAAGCCTTTCCAGACCTGGCTCCAATCCTCTGGCACTCATGCGGC
EST: AACTTATTGTGCCTGAGCAGCGGGAGAATGCACTCCTTGATCTTTCCAAG AAAAGAGAAGCCTTTCCAGACCTGGCTCCAATCCTCTGGCACTCATGCGGCEST: gi|100368244|gb|BY948190.1|BY948190
genomic: AACTTATTGTGCCTGAGCAGCGGGAGAATGCACTCCTTGATCTTTCCAAGgtatcatcct ... caaattgcagAAAAGAGAAGCCTTTCCAGACCTGGCTCCAATCCTCTGGCACTCATGCGGC
EST: AACTTATTGTGCCTGAGCAGCGGGAGAATGCACTCCTTGATCTTTCCAAG AAAAGAGAAGCCTTTCCAGACCTGGCTCCAATCCTCTGGCACTCATGCGGC
genomic: AACTTATTGTGCCTGAGCAGCGGGAGAATGCACTCCTTGATCTTTCCAAGgtatcatcct ... caaattgcagAAAAGAGAAGCCTTTCCAGACCTGGCTCCAATCCTCTGGCACTCATGCGGC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ATCGAAAGAGGAGGGGAGCACGATGGCCAGTGCGGAACAGTTGGTTCTGGAACTTATTGTGCCTGAGCAGCGGGAGAATGCACTCCTTGATCTTTCCAAGgtatcatcctttctaaggaatgagttagggcactagctagaatttcccaacggagtgatcaagcgtgacgatgatcgttgtgtagagtgtttgcaagtgt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAA