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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GGGGTCGATGGTCACGACAACAACCATGTGAGGCACCGCACATGTAGACTGTCCTGAATGTGATCATGATTCGTCTCTTATCCTCGCCATTTCACACAAGgttggtgaagcaagcatgttataagcatgttataagcttatctccgaacgattcatgatgatggatatgcttttctgtattgtttctgttcatgtggaac...

Basic information

species Physcomitrella patens
transcript PP1S159_28V6.1
intron # 1
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|18324810|gb|BJ156805.1|BJ156805
EST:     GTCCTGAATGTGATCATGATTCGTCTCTTATCCTCGCCATTTCACACAAG                         GGAATTACGTTAGGTAATCATGAGCAAACCAGCAGGGGGAGTGCAAGAACA
genomic: GTCCTGAATGTGATCATGATTCGTCTCTTATCCTCGCCATTTCACACAAGgttggtgaag ... tttgatgcagGGAATTACGTTAGGTAATCATGAGCAAACCAGCAGGGGGAGTGCAAGAACA
EST: gi|18346502|gb|BJ178546.1|BJ178546
EST:     GTCCTGAATGTGATCATGATTCGTCTCTTATCCTCGCCATTTCACACAAG                         GGAATTACGTTAGGTAATCATGAGCAAACCAGCAGGGGGAGTGCAAGAACA
genomic: GTCCTGAATGTGATCATGATTCGTCTCTTATCCTCGCCATTTCACACAAGgttggtgaag ... tttgatgcagGGAATTACGTTAGGTAATCATGAGCAAACCAGCAGGGGGAGTGCAAGAACA