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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TCTCAAAGCAATAGCTTTCTACAGAGAGGCGCAAATCCTTCCGGTGGTAGGCGTTGTTGCAAATTGATCCGGGCCGCCGGGAAGTTTTGTTGAATTATTGgtgcgaatcttatcaacattgtggcctgtcatggtagtgcatgagcgaagaacctcattctttgattactccaccgtttgatgctgtaatctacttctaa...

Basic information

species Physcomitrella patens
transcript PP1S158_112V6.2
intron # 1
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|18355830|gb|BJ187889.1|BJ187889
EST:     GCGTTGTTGCAAATTGATCCGGGCCGCCGGGAAGTTTTGTTGAATTATTG                         TCTTGGGAGTGTTCACCTGATCTAGTTGCGGGTGATCGGCTCAGGATTCTA
genomic: GCGTTGTTGCAAATTGATCCGGGCCGCCGGGAAGTTTTGTTGAATTATTGgtgcgaatct ... gtactgtcagTCTTGGGAGTGTTCACCTGATCTAGTTGCGGGTGATCGGCTCAGGATTCTA
EST: gi|18352792|gb|BJ184847.1|BJ184847
EST:     GCGTTGTTGCAAATTGATCCGGGCCGCCGGGAAGTTTTGTTGAATTATTG                         TCTTGGGAGTGTTCACCTGATCTANTTGCGGGTGATCGGCTCANGATTCTA
genomic: GCGTTGTTGCAAATTGATCCGGGCCGCCGGGAAGTTTTGTTGAATTATTGgtgcgaatct ... gtactgtcagTCTTGGGAGTGTTCACCTGATCTAGTTGCGGGTGATCGGCTCAGGATTCTA