1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' |
GCTGTTTAGTCTAGCTTAGTCGATGGCGATGGAGCGTGCTCTGATGCGCTTGGTGCGCGCCCAGGCGTTGCGTGCCTCCTCGTCCATTGGGGTTCTTCAGgttaggtttgacggcgatttgggttgtccaagagggttggaagcattttttttttttcttttcaattttaaagttgcggttttgctttcaatttctagacgggtgtttgtgggtcttgaattgggtttttgagctggtgtttatttgggtggacag
species | Physcomitrella patens |
transcript | PP1S154_6V6.2 |
intron # | 1 |
splice site | 5' |
intron type | U2 |
EST: TGGTGCGCGCCCAGGCGTTGCGTGCCTCCTCGTCCATTGGGGTTCTTCAG CGGGGACCGGTTGGAAGTGCATCGCCTTTGCAACAGGTGCGGGAGTACGTGEST: gi|18328945|gb|BJ160951.1|BJ160951
genomic: TGGTGCGCGCCCAGGCGTTGCGTGCCTCCTCGTCCATTGGGGTTCTTCAGgttaggtttg ... gggtggacagCGGGGACCGGTTGGAAGTGCATCGCCTTTGCAACAGGTGCGGGAGTACGTG
EST: TGGTGCGCGCCCAGGCGTTGCGTGCCTCCTCGTCCATTGGGGTTCTTCAG CGGGGACCGGTTGGAAGTGCATCGCCTTTGCAACAGGTGCGGGAGTACGTGEST: gi|18367934|gb|BJ200017.1|BJ200017
genomic: TGGTGCGCGCCCAGGCGTTGCGTGCCTCCTCGTCCATTGGGGTTCTTCAGgttaggtttg ... gggtggacagCGGGGACCGGTTGGAAGTGCATCGCCTTTGCAACAGGTGCGGGAGTACGTG
EST: TGGTGCGCGCCCAGGCGTTGCGTGCCTCCTCGTCCATTGGGGTTCTTCAG CGGGGACCGGTTGGAAGTGCATCGCCTTTGCAACAGGTGCGGGAGTACGTGEST: gi|18372309|gb|BJ203911.1|BJ203911
genomic: TGGTGCGCGCCCAGGCGTTGCGTGCCTCCTCGTCCATTGGGGTTCTTCAGgttaggtttg ... gggtggacagCGGGGACCGGTTGGAAGTGCATCGCCTTTGCAACAGGTGCGGGAGTACGTG
EST: TGGTGCGCGCCCAGGCGTTGCGTGCCTCCTCGTCCATTGGGGTTCTTCAG CGGGGACCGGTTGGAAGTGCATCGCCTTTGCAACAGGTGCGGGAGTACGTGEST: gi|18372886|gb|BJ204488.1|BJ204488
genomic: TGGTGCGCGCCCAGGCGTTGCGTGCCTCCTCGTCCATTGGGGTTCTTCAGgttaggtttg ... gggtggacagCGGGGACCGGTTGGAAGTGCATCGCCTTTGCAACAGGTGCGGGAGTACGTG
EST: TGGTGCGCGCCCAGGCGTTGCGTGCCTCCTCGTCCATTGGGGTTCTTCAG CGGGGACCGGTTGGAAGTGCATCGCCTTTGCAACAGGTGCGGGAGTACGTG
genomic: TGGTGCGCGCCCAGGCGTTGCGTGCCTCCTCGTCCATTGGGGTTCTTCAGgttaggtttg ... gggtggacagCGGGGACCGGTTGGAAGTGCATCGCCTTTGCAACAGGTGCGGGAGTACGTG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GCTGTTTAGTCTAGCTTAGTCGATGGCGATGGAGCGTGCTCTGATGCGCTTGGTGCGCGCCCAGGCGTTGCGTGCCTCCTCGTCCATTGGGGTTCTTCAGgttaggtttgacggcgatttgggttgtccaagagggttggaagcattttttttttttcttttcaattttaaagttgcggttttgctttcaatttctagacgggtgtttgtgggtcttgaattgggtttttgagctggtgtttatttgggtggacag
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