1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
CTAGACAGGGGAAGGGCAAGAGAGGAGACATGACGAAGGCTAAGAAGACTCGGAAGTTCGCTCAAGTGAAGCGTATGCTCGCGCCGAAAGCAATTAAACAgtgagttgatttctgggtagaatgtatgcagtgactgtgaattgtggttatgcggtttggagtgtggcaaaatgctacctctgcgactttccttctcgtgtggcaattggcaggaaaactgatgattgctttgtttgtccacgaag
species | Physcomitrella patens |
transcript | PP1S153_101V6.1 |
intron # | 1 |
splice site | 5' |
intron type | U2 |
EST: CGGAAGTTCGCTCAAGTGAAGCGTATGCTCGCGCCGAAAGCAATTAAACA ATACAAGGACGACGTTTTGAACCCGAAGAGGAAGGATACTAGCTTAGAGAAEST: gi|100365650|gb|BY948205.1|BY948205
genomic: CGGAAGTTCGCTCAAGTGAAGCGTATGCTCGCGCCGAAAGCAATTAAACAgtgagttgat ... gtccacgaagATACAAGGACGACGTTTTGAACCCGAAGAGGAAGGATACTAGCTTAGAGAA
EST: CGGAAGTTCGCTCAAGTGAAGCGTATGCTCGCGCCGAAAGCAATTAAACA ATACAAGGACGACGTTTTGAACCCGAAGAGGAAGGATACTAGCTTAGAGAAEST: gi|208383700|gb|DC928031.1|DC928031
genomic: CGGAAGTTCGCTCAAGTGAAGCGTATGCTCGCGCCGAAAGCAATTAAACAgtgagttgat ... gtccacgaagATACAAGGACGACGTTTTGAACCCGAAGAGGAAGGATACTAGCTTAGAGAA
EST: CGGAAGTTCGCTCAAGTGAAGCGTATGCTCGCGCCGAAAGCAATTAAACA ATACAAGGACGACGTTTTGAACCCGAAGAGGAAGGATACTAGCTTAGAGAAEST: gi|18348287|gb|BJ180334.1|BJ180334
genomic: CGGAAGTTCGCTCAAGTGAAGCGTATGCTCGCGCCGAAAGCAATTAAACAgtgagttgat ... gtccacgaagATACAAGGACGACGTTTTGAACCCGAAGAGGAAGGATACTAGCTTAGAGAA
EST: CGGAAGTTCGCTCAAGTGAAGCGTATGCTCGCGCCGAAAGCAATTAAACA ATACAAGGACGACGTTTTGAACCCGAAGAGGAAGGATACTAGCTTAGAGAAEST: gi|18344506|gb|BJ176547.1|BJ176547
genomic: CGGAAGTTCGCTCAAGTGAAGCGTATGCTCGCGCCGAAAGCAATTAAACAgtgagttgat ... gtccacgaagATACAAGGACGACGTTTTGAACCCGAAGAGGAAGGATACTAGCTTAGAGAA
EST: CGGAAGTTCGCTCAAGTGAAGCGTATGCTCGCGCCGAAAGCAATTAAACA ATACAAGGACGACGTTTTGAACCCGAAGAGGAAGGATACTAGCTTAGAGAAEST: gi|208356397|gb|DC914287.1|DC914287
genomic: CGGAAGTTCGCTCAAGTGAAGCGTATGCTCGCGCCGAAAGCAATTAAACAgtgagttgat ... gtccacgaagATACAAGGACGACGTTTTGAACCCGAAGAGGAAGGATACTAGCTTAGAGAA
EST: CGGAAGTTCGCTCAAGTGAAGCGTATGCTCGCGCCGAAAGCAATTAAACA ATACAAGGACGACGTTTTGAACCCGAAGAGGAAGGATACTAGCTTAGAGAAEST: gi|18355693|gb|BJ187752.1|BJ187752
genomic: CGGAAGTTCGCTCAAGTGAAGCGTATGCTCGCGCCGAAAGCAATTAAACAgtgagttgat ... gtccacgaagATACAAGGACGACGTTTTGAACCCGAAGAGGAAGGATACTAGCTTAGAGAA
EST: CGGAAGTTCGCTCAAGTGAAGCGTATGCTCGCGCCGAAAGCAATTAAACA ATACAAGGACGACGTTTTGAACCCGAAGAGGAAGGATACTAGCTTAGAGAAEST: gi|208400155|gb|DC904803.1|DC904803
genomic: CGGAAGTTCGCTCAAGTGAAGCGTATGCTCGCGCCGAAAGCAATTAAACAgtgagttgat ... gtccacgaagATACAAGGACGACGTTTTGAACCCGAAGAGGAAGGATACTAGCTTAGAGAA
EST: CGGAAGTTCGCTCAAGTGAAGCGTATGCTCGCGCCGAAAGCAATTAAACA ATACAAGGACGACGTTTTGAACCCGAAGAGGAAGGATACTAGCTTAGAGAAEST: gi|208370447|gb|DC952150.1|DC952150
genomic: CGGAAGTTCGCTCAAGTGAAGCGTATGCTCGCGCCGAAAGCAATTAAACAgtgagttgat ... gtccacgaagATACAAGGACGACGTTTTGAACCCGAAGAGGAAGGATACTAGCTTAGAGAA
EST: TCGCGCCGAAAGCANTT-AACA ATNCAAGGACGACG-TTTGNACCCGAAGAGGGAGGATACTAGCTTAGAGAAEST: gi|100416555|gb|BY975445.1|BY975445
genomic: TCGCGCCGAAAGCAATTAAACAgtgagttgat ... gtccacgaagATACAAGGACGACGTTTTGAACCCGAAGAGGAAGGATACTAGCTTAGAGAA
EST: CGGAAGTTCGCTCAAGTGAAGCGTATGCTCGCGCCGAAAGCAATTAAACA ATACAAGGACGACGTTTTGAACCCGAAGAGGAAGGATACTAGCTTAGAGAC
genomic: CGGAAGTTCGCTCAAGTGAAGCGTATGCTCGCGCCGAAAGCAATTAAACAgtgagttgat ... gtccacgaagATACAAGGACGACGTTTTGAACCCGAAGAGGAAGGATACTAGCTTAGAGAA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| CTAGACAGGGGAAGGGCAAGAGAGGAGACATGACGAAGGCTAAGAAGACTCGGAAGTTCGCTCAAGTGAAGCGTATGCTCGCGCCGAAAGCAATTAAACAgtgagttgatttctgggtagaatgtatgcagtgactgtgaattgtggttatgcggtttggagtgtggcaaaatgctacctctgcgactttccttctcgtgtggcaattggcaggaaaactgatgattgctttgtttgtccacgaag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCAA