1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
TCATAGGCACTCGAATGCGTTGGTTGATGTGTTGCCCCCTGAAGCTGATTCCAGTATCTCTCTATTGACACAATCCGAGAAGCCCGATGTATCGTATAACgtacgtttgtcctatcttgcacacaaaaaaattgtgtatttatttttttttatttttttgggatttacctgtgcaaattgtactcaagcagatttagccg...
species | Physcomitrella patens |
transcript | PP1S147_100V6.1 |
intron # | 1 |
splice site | 5' |
intron type | U2 |
EST: CCAGTATCTCTCTATTGACACAATCCGAGAAGCCCGATGTATCGTATAAC GATATTGGTGGATGCGATATTCAGAAACAAGAAATCAGGGAAGCTGTGGAGEST: gi|100377843|gb|BY986421.1|BY986421
genomic: CCAGTATCTCTCTATTGACACAATCCGAGAAGCCCGATGTATCGTATAACgtacgtttgt ... gtggatgcagGATATTGGTGGATGCGATATTCAGAAACAAGAAATCAGGGAAGCTGTGGAG
EST: CCAGTATCTCTCTATTGACACACTCCGAGAAGCCCGATGTATCGTATAAC GATATTGGGGGGATGCGATATTCAGAAACAAGEST: gi|100386569|gb|BY951365.1|BY951365
genomic: CCAGTATCTCTCTATTGACACAATCCGAGAAGCCCGATGTATCGTATAACgtacgtttgt ... gtggatgcagGATATTGGTGG-ATGCGATATTCAGAAACAAG
EST: CCAGTATCTCTCTATTGACACAATCCGAGAAGCCCGATGTATCGTATAAC GATATTGGTGGATGCGATATTCAGAAACAAGAAATCAGGGAAGCTGTGGAGEST: gi|100381253|gb|BY950047.1|BY950047
genomic: CCAGTATCTCTCTATTGACACAATCCGAGAAGCCCGATGTATCGTATAACgtacgtttgt ... gtggatgcagGATATTGGTGGATGCGATATTCAGAAACAAGAAATCAGGGAAGCTGTGGAG
EST: CCAGTATCTCTCTATTGACACAATCCGAGAAGCCCGATGTATCGTATAAC GATATTGGTGGATGCGATATTCAGAAACAAGAAATCAGGGAAGCTGTGGAG
genomic: CCAGTATCTCTCTATTGACACAATCCGAGAAGCCCGATGTATCGTATAACgtacgtttgt ... gtggatgcagGATATTGGTGGATGCGATATTCAGAAACAAGAAATCAGGGAAGCTGTGGAG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TCATAGGCACTCGAATGCGTTGGTTGATGTGTTGCCCCCTGAAGCTGATTCCAGTATCTCTCTATTGACACAATCCGAGAAGCCCGATGTATCGTATAACgtacgtttgtcctatcttgcacacaaaaaaattgtgtatttatttttttttatttttttgggatttacctgtgcaaattgtactcaagcagatttagccg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -caaaaaaa