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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TGGTTTTCATTGTTGATGTGCGGGCTGACAAGAAGAAGATCAAGGAGGCTGTCAAGAAGATGTATGACATCCAGACCAAGAAGGTCAACACATTGATCAGgtactcattatcccccctttgttgttatgtcctccagtgcgttagggttaagcgtttcagtctcttcgcgattgaattgatatgttattcccacatgggt...

Basic information

species Physcomitrella patens
transcript PP1S146_96V6.1
intron # 1
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: PP1S146_96V6.1 (Physcomitrella patens), 5'ss of exon 1
lower sequence: LOC_Os01g24690.3 (Oryza sativa), 5'ss of exon 2
TGGTTTTCATTGTTGATGTGCGGGCTGACAAGAAGAAGATCAAGGAGGCTGTCAAGAAGATGTATGACATCCAGACCAAGAAGGTCAACACATTGATCAGgtactcattatcccccctttgttgttatgtcctccagtgcgttagggttaagcgtttcagtctcttcgcg-attgaattgatatgttattcccacatgggt
| || ||||| || ||  |   ||| |||||||||||||||||||  ||||||||||||||||||||||||||| | ||||| || |||||  |||||||||    |||| | | ||||  ||  |   |     | | || |    ||  |  | |      ||| | | || || ||  | |  ||             
TTGTCTTCATCGTCGACCTCAAGGCAGACAAGAAGAAGATCAAGGCAGCTGTCAAGAAGATGTATGACATCCAGGCAAAGAAAGTTAACACTCTGATCAGgt---tattaactcaccttcctttgttcatggctgaatacgcttca-ttctgtatgttgacaacttggtgtatcgattttctgtaatacag----------

upper sequence: PP1S146_96V6.1 (Physcomitrella patens), 5'ss of exon 1
lower sequence: LOC_Os04g42270.1 (Oryza sativa), 5'ss of exon 3
TGGTTTTCATTGTTGATGTGCGGGCTGACAAGAAGAAGATCAAGGAGGCTGTCAAGAAGATGTATGACATCCAGACCAAGAAGGTCAACACATTGATCAGgtactcattatcccccctttgttgttatgtcctccagtgcgttagggttaagcgtttcagtctcttcgcgattgaattgatatgttattcccacatgggt
|||| |||||||||||  |   |||||||||||||||||||||||  ||||||||||||||||| ||||||||| | ||||| || |||||  |||||||||   || | |||  | |   |  || | ||      |  | ||||    || ||      ||   |    |||  ||                      
TGGTCTTCATTGTTGACCTTAAGGCTGACAAGAAGAAGATCAAGGCTGCTGTCAAGAAGATGTACGACATCCAGGCAAAGAAAGTGAACACTCTGATCAGgttagcactttccttcatacttcattttatcgcttgatttgctaggt---agtgtagttaactgaccctacttgtcttccag------------------

upper sequence: PP1S146_96V6.1 (Physcomitrella patens), 5'ss of exon 1
lower sequence: GRMZM2G124411_T04 (Zea mays), 5'ss of exon 3
TGGTTTTCATTGTTGATGTGCGGGCTGACAAGAAGAAGATCAAGGAGGCTGTCAAGAAGATGTATGACATCCAGACCAAGAAGGTCAACACATTGATCAGgtactcattatcccccct-ttgttgttatgtcctccagtgcgttagggttaagcgtttcagtctcttcgcgattgaattgatatgttattcccacatgggt
| || |||||||| ||  |   ||| |||||||||||||||||||  ||||||||||||||||||||||| ||| ||||||||||||||||  |||||||||   ||||    ||  | || || |  ||| |   | |   ||| | |       |      | |||  |||||  |     |||  |  |||       
TTGTCTTCATTGTCGACCTCAAGGCAGACAAGAAGAAGATCAAGGCTGCTGTCAAGAAGATGTATGACATTCAGGCCAAGAAGGTCAACACCCTGATCAGgttagcatttggtccagtgttattttcttgtgcat-aatttattatgttgtgcaactgtgagttattcttgattgtgtc----tgtcctgtccag------

upper sequence: PP1S146_96V6.1 (Physcomitrella patens), 5'ss of exon 1
lower sequence: GRMZM2G083253_T04 (Zea mays), 5'ss of exon 3
TGGTTTTCATTGTTGATGTGCGGGCTGACAAGAAGAAGATCAAGGAGGCTGTCAAGAAGATGTATGACATCCAGACCAAGAAGGTCAACACATTGATCAGgtactcattatcccccctttgttgttatgtcctccagtgcgttagggttaagcgtttcagtctcttcgcgattgaattgatatgttattcccacatgggt
|||| |||||||||||  |   ||| |||||||||||||||||||  || |||||||||||||||||||||||| | |||||||||||||| ||||||||||   || |  ||||  | |  | || |      |  |   ||| | |       |  ||  |  |    || |  |   |                   
TGGTCTTCATTGTTGACCTCAAGGCAGACAAGAAGAAGATCAAGGCTGCCGTCAAGAAGATGTATGACATCCAGGCAAAGAAGGTCAACACCTTGATCAGgttagcacttgccccagtgtaattttttcctgcacgatttattatgttgtgcaactaaagagttattcttatcgtgtctgtgcag---------------

upper sequence: PP1S146_96V6.1 (Physcomitrella patens), 5'ss of exon 1
lower sequence: GRMZM2G166659_T01 (Zea mays), 5'ss of exon 3
TGGTTTTCATTGTTGATGTGCGGGCTGACAAGAAGAAGATCAAGGAGGCTGTCAAGAAGATGTATGACATCCAGACCAAGAAGGTCAACACATTGATCAGgtactcattatcccccctttgttgttatgtcctccagtgcgttagggttaagcgtttcagtctcttcgcgattgaattgatatgttattcccacatgggt
|||| || ||||||||  |   ||| |||||||| ||||||||||  || |||||||||||||||||||| ||  | ||||||||||||||  |||||||||   |  | | | ||      |||||| |  |   |||| | |   ||     |||  |   ||  | ||||   ||||| |||   | |         
TGGTCTTTATTGTTGACCTCAAGGCAGACAAGAAAAAGATCAAGGCTGCGGTCAAGAAGATGTATGACATTCAAGCAAAGAAGGTCAACACCCTGATCAGgttagcgctttgctcc----agtgttatttttt---gtgcataat--ttgttattttgtgcaactgagtgattc--ttgatgtgtccatgcag-------

upper sequence: PP1S146_96V6.1 (Physcomitrella patens), 5'ss of exon 1
lower sequence: GRMZM2G172153_T01 (Zea mays), 5'ss of exon 11
---TGGTTTTCATTGTTGATGTGCGGGCTGACAAGAAGAAGATCAAGGAGGCTGTCAAGAAGATGTATGACATCCAGACCAAGAAGGTCAACACATTGATCAGgtactcattatcccccctttgttgttatgtcctccagtgcgttagggttaagcgtttcagtctcttcgcgattgaattgatatgttattcccacatgggt
   |||| |||||||| ||  |   ||| |||||||||||||||||||  |||| |||||   |||||||||| ||| ||||||||||||||||  |||||| ||   ||||    ||       |||||| | ||   |||| | |   |  |   | |  ||    | | || | ||||  ||   | |  |      |  
CTCTGGTCTTCATTGTCGACCTCAAGGCAGACAAGAAGAAGATCAAGGCTGCTGCCAAGA---TGTATGACATTCAGGCCAAGAAGGTCAACACCCTGATCAAgttagcatttggtcc-----agtgttattttctt--gtgcataa---tctattatgtt-gtgcaattgtgagttaattctta-actgtgtctgtccag--

upper sequence: PP1S146_96V6.1 (Physcomitrella patens), 5'ss of exon 1
lower sequence: GLYMA13G40780.2 (Glycine max), 5'ss of exon 2
TGGTTTTCATTGTTGATGTGCGGGCTGACAAGAAGAAGATCAAGGAGGCTGTCAAGAAGATGTATGACATCCAGACCAAGAAGGTCAACACATTGATCAGgt-actcattatcccccctttgttgttatgtcctccagtgcgttagggttaagcgtttcagtctcttcgcgattgaattgatat-gttattcccacatgggt-
||||||||||||||||  ||||||| |||||||||||||||||||| || ||||||||||||||||| || ||| ||||||| || ||||| |||||||||| |  | ||||       |  || |    |      ||   ||     |     |||   |||  |  | || | ||   |   || | |   | || |   
TGGTTTTCATTGTTGACTTGCGGGCCGACAAGAAGAAGATCAAGGATGCAGTCAAGAAGATGTATGATATTCAGGCCAAGAAAGTAAACACCTTGATCAGgtgagcctttataaagtgatgcttatagaatttgtttgttgattcattattgctattt---tctaatgacaatggtatgcttgcagtgaatttgatattgcag

upper sequence: PP1S146_96V6.1 (Physcomitrella patens), 5'ss of exon 1
lower sequence: GLYMA15G04670.2 (Glycine max), 5'ss of exon 3
TGGTTTTCATTGTTGATGTGCGGGCTGACAAGAAGAAGATCAAGGAGGCTGTCAAGAAGATGTATGACATCCAGACCAAGAAGGTCAACACATTGATCAGgt-actcattatcc----cccctttgttgttatgtcctccagtgcgttagggttaagcgtttcagtctcttcgcgattgaattgatatgttattcccacatgggt
|||||||||| || ||  |||||||||||||||||||||||||||| || ||||||||||||||||| || ||||||||||| || ||||| || ||||||| | || ||||         ||||     | |||       |   |||  | |||        || |  | ||  |  | || ||   | |  |  |||     
TGGTTTTCATAGTCGACTTGCGGGCTGACAAGAAGAAGATCAAGGATGCAGTCAAGAAGATGTATGATATTCAGACCAAGAAAGTAAACACCTTAATCAGgtgagtctttatgtagtgatgcttttagaatttgtttgatgattttttattgctaatgacaatggtatgcttgcagtgaattttattactgagacataca-----

upper sequence: PP1S146_96V6.1 (Physcomitrella patens), 5'ss of exon 1
lower sequence: GLYMA11G15230.2 (Glycine max), 5'ss of exon 3
TGGTTTTCATTGTTGATGTGCGGGCTGACAAGAAGAAGATCAAGGAGGCTGTCAAGAAGATGTATGACATCCAGACCAAGAAGGTCAACACATTGATCAGgtactcattatcccccctttgttgttatgtcctccagtgcgttagggtta-agcgtttcagtctcttcgcgattgaat---tgatatgttattcccacatgggt
||||||||||||| ||  |||| || |||||||||||||||||||| || || ||||| ||||||||||||||| ||||||| || ||||| ||||||||||   ||  |        |   | ||  ||  |  |  |   | |  | | |  |  | | |      |  |||  ||   || ||    |||||    |  | 
TGGTTTTCATTGTCGACCTGCGTGCCGACAAGAAGAAGATCAAGGATGCCGTGAAGAAAATGTATGACATCCAGGCCAAGAAAGTTAACACCTTGATCAGgtgagca--actatttaatgactattcagttttg-atagtaatggtttcataatgcattattgctgatgaaatttgatgggtggtagtgaattccgttttcag-

upper sequence: PP1S146_96V6.1 (Physcomitrella patens), 5'ss of exon 1
lower sequence: GLYMA12G07160.2 (Glycine max), 5'ss of exon 3
TGGTTTTCATTGTTGATGTGCGGGCTGACAAGAAGAAGATCAAGGAGGCTGTCAAGAAGATGTATGACATCCAGACCAAGAAGGTCAACACATTGATCAGgtactcat-tatcccccctttgttgttatgtcctccagtgcgttagggttaagcgtttcagtctcttcgcgattgaattgatatgttattcccacatgggt--
||||||||||||| ||  |||| || |||||||||||||||||||| || || ||||| ||||||||||||||| |||| || || ||||| ||||||||||   ||| ||| |     |||  ||| ||      |     | |   |  |   || | |         | |   |||| || || ||| ||  ||      
TGGTTTTCATTGTCGACCTGCGTGCCGACAAGAAGAAGATCAAGGATGCGGTGAAGAAAATGTATGACATCCAGGCCAAAAAAGTGAACACCTTGATCAGgtgagcatctatgcaatgattgcagttttgatagtaatgatttcatattgcattattgctgatgaaatttgtt--gattggta-gtgatttccgtattcactt

upper sequence: PP1S146_96V6.1 (Physcomitrella patens), 5'ss of exon 1
lower sequence: GLYMA02G10550.1 (Glycine max), 5'ss of exon 2
TGGTTTTCATTGTTGATGTGCGGGCTGACAAGAAGAAGATCAAGGAGGCTGTCAAGAAGATGTATGACATCCAGACCAAGAAGGTCAACACATTGATCAGgtactc---attatcccccctttgt---tgttatgtcctccagtgcgttagggttaagcgtttcagtctcttcgcgattgaattgatatgttattcccacatgggt
||||||| ||||||||  | || ||  ||||||| ||||| ||||| ||||| ||||||||||||||||| ||| | ||||| ||||| ||||| |||||||| |    || |   | | |||     || ||  |       ||  ||   |  ||      ||        |  |  | | | ||  ||||  |  |||     
TGGTTTTTATTGTTGACCTTCGTGCAAACAAGAAAAAGATTAAGGATGCTGTGAAGAAGATGTATGACATTCAGGCAAAGAAAGTCAATACATTAATCAGgtaatggaaatgacaacgcatttacatctgctacatgtatatttgatttgttgaaaaaaaaaacaaatgtagagaaaaaggactaattggttag-cttaca-----

upper sequence: PP1S146_96V6.1 (Physcomitrella patens), 5'ss of exon 1
lower sequence: GLYMA18G52310.1 (Glycine max), 5'ss of exon 3
-TGGTTTTCATTGTTGATGTGCGGGCTGACAAGAAGAAGATCAAGGAGGCTGTCAAGAAGATGTATGACATCCAGACCAAGAAGGTCAACACATTGATCAGgtactcattatcccccctttgttgttatgtcctcca-gtgcgttagggttaagcgttt-cagtctcttcgcgattgaattgatatgttattcc-cacatgggt
 ||||||| ||||||||  | || |||||||| |||||||| || || ||||| ||||||||||||||||| ||| | ||||| || || || || |||||||| |    ||      | | ||   || | || || ||   || |  ||     |   ||  |   |   ||   |   ||    ||  |   |  |     
CTGGTTTTTATTGTTGACCTCCGTGCTGACAAAAAGAAGATTAAAGATGCTGTGAAGAAGATGTATGACATTCAGGCGAAGAAAGTGAATACTTTAATCAggtaatggaaatgaaaaatgtatttagatctgctacatgtaattttgaattgttgataaacaaccaaatgtagagaaagaggaccaattgcttagcttac----

upper sequence: PP1S146_96V6.1 (Physcomitrella patens), 5'ss of exon 1
lower sequence: AT2G39460.1 (Arabidopsis thaliana), 5'ss of exon 2
TGGTTTTCATTGTTGATGTGCGGGCTGACAAGAAGAAGATCAAGGAGGCTGTCAAGAAGATGTATGACATCCAGACCAAGAAGGTCAACACATTGATCAGgtactcattatcccccctttgttgttatgtcctccagtgcgttagggttaagcgtttcagtctcttcgcgattgaattgatatgttattcccacatgggt
| ||||||||||||||  | || ||||||||||||||||| ||||| ||||| ||||||||||||||||||||||||||||| || |||||| | ||||||||||  | |       |||  | | | | | |   ||| | | |  ||| |   |||| | | || |  | |    || | || | ||   |||     
TTGTTTTCATTGTTGACATTCGTGCTGACAAGAAGAAGATTAAGGATGCTGTTAAGAAGATGTATGACATCCAGACCAAGAAAGTGAACACACTCATCAGgtactt-taaagagtatttttctatgaagccttgttgtgagattga-ttatg---ttcaatatatttgacacta---tggtttggttttgttacag----

upper sequence: PP1S146_96V6.1 (Physcomitrella patens), 5'ss of exon 1
lower sequence: AT3G55280.1 (Arabidopsis thaliana), 5'ss of exon 3
TGGTTTTCATTGTTGATGTGCGGGCTGACAAGAAGAAGATCAAGGAGGCTGTCAAGAAGATGTATGACATCCAGACCAAGAAGGTCAACACATTGATCAGgtactcattatcccccctttgttgttatgtcctccagtgcgt-tagggttaagcgtttcagtctcttcgcgattgaattgatatgttattcccacatgggt
| || |||||||||||  | || ||||||||||| |||||||| || ||||||||||||||||||||||| ||||||||||| ||||||||  | || |||||  || ||   |  |  ||  | ||||   |   ||     | | || | | || |  || | |  ||                               
TAGTCTTCATTGTTGACATCCGTGCTGACAAGAAAAAGATCAAAGATGCTGTCAAGAAGATGTATGACATTCAGACCAAGAAAGTCAACACCCTCATTAGgtaaacactaaaacttcactga-gatatgggtttatgtaaacatggagtgatgagtgtatgtttgtatgcag-----------------------------

upper sequence: PP1S146_96V6.1 (Physcomitrella patens), 5'ss of exon 1
lower sequence: Vv13s0019g00250.t01 (Vitis vinifera), 5'ss of exon 3
TGGTTTTCATTGTTGATGTGCGGGCTGACAAGAAGAAGATCAAGGAGGCTGTCAAGAAGATGTATGACATCCAGACCAAGAAGGTCAACACATTGATCAGgtactcattatcccccctttgttgttatgtcctccagtgcgttagggttaagcgtttcagtctcttcgcgattgaattgatatgttattcccacatgggt
||||||||||||||||  | || ||||||||||| |||||||| || || || ||||||||||| || || ||||||||||| || ||||| ||||||||||| |    ||     |  |    | |   | | || ||  || ||||   |      |   |||||   |    |  | ||  | |||   | |     
TGGTTTTCATTGTTGACATCCGTGCTGACAAGAAAAAGATCAAAGATGCAGTGAAGAAGATGTACGAAATTCAGACCAAGAAAGTTAACACTTTGATCAGgtaatttccattaattcactcacttaacaacatgcattgtttttgggtagggaaaggaaaattcttctttacaccaaggctagatgattaaaagaaataa

upper sequence: PP1S146_96V6.1 (Physcomitrella patens), 5'ss of exon 1
lower sequence: Vv06s0004g04090.t01 (Vitis vinifera), 5'ss of exon 3
TGGTTTTCATTGTTGATGTGCGGGCTGACAAGAAGAAGATCAAGGAGGCTGTCAAGAAGATGTATGACATCCAGACCAAGAAGGTCAACACATTGATCAGgtactcattatcccccctttgttgttatgtcctccagtgcgttagggttaagcgtttcagtctcttcgcgattgaattgatatgttattcccacatgggt--
||||||||||||||||  | || ||  ||||||||||||| ||||| ||||| || ||||||||||| || ||||||||||| || || ||  |||||||||| ||| |||      |    |  ||| |  |    | | | ||  |  |||  || | |   |   ||||  |  |   |   | |||  |  | | |  
TGGTTTTCATTGTTGACATTCGTGCCAACAAGAAGAAGATAAAGGATGCTGTTAAAAAGATGTATGATATTCAGACCAAGAAAGTGAATACCCTGATCAGgta-tcaatatttttattccaattatattttttattatccctgagtatacagcagtt-attggatagtcgataaagatatcagacttttcaaagttagattc

upper sequence: PP1S146_96V6.1 (Physcomitrella patens), 5'ss of exon 1
lower sequence: Vv08s0040g02630.t01 (Vitis vinifera), 5'ss of exon 2
TGGTTTTCATTGTTGATGTGCGGGCTGACAAGAAGAAGATCAAGGAGGCTGTCAAGAAGATGTATGACATCCAGACCAAGAAGGTCAACACATTGATCAGgtactcattatcccccctttgttgttatgtcctccagtgcg-ttagggttaagcgtttcagtctcttcgcgattgaattgatatgttattcccacatgggt
| || |||||||||||  | || |||||||| |||||||| ||||| ||  | ||||| ||||||||||| ||||||||||| || || || |||||||||||   | |          | || | |     || | ||   |||  |  |    |||     |     | ||| |  |||| | | |||      |||  
TTGTCTTCATTGTTGACATCCGTGCTGACAAAAAGAAGATAAAGGATGCAATGAAGAAAATGTATGACATTCAGACCAAGAAAGTGAATACCTTGATCAGgtaaagacttcattttgaatcttctcagcagttcaattgaaattattggcatttttttttcagttgcaacaattcatatgat-tatcattttttgttggca

upper sequence: PP1S146_96V6.1 (Physcomitrella patens), 5'ss of exon 1
lower sequence: EFJ09823 (Selaginella moellendorffii), 5'ss of exon 2
TGGTTTTCATTGTTGATGTGCGGGCTGACAAGAAGAAGATCAAGGAGGCTGTCAAGAAGATGTATGACATCCAGACCAAGAAGGTCAACACATTGATCAGgtactcattatcccccctttgttgttatg-tcctccagtgcgttagggttaagcgtttcagtctcttcgcgattgaattgatatgttattcccacatgggt-------------------------------------------------------------------------
|||| ||||| || ||  | ||||| |||||||||||||||||| | || || |||| |||||| || ||||||||||||||||| |||||  |||||||||| || || |  |    ||       || |  || |||| ||      |   || ||||   |||||| |  ||   | |    || ||    | |  ||                                                                         
TGGTCTTCATCGTCGACATCCGGGCCGACAAGAAGAAGATCAAGAACGCCGTGAAGATGATGTACGATATCCAGACCAAGAAGGTGAACACGCTGATCAGgtaatctttctttctttctttcctcggtggtagtctagtgtgtc-----ttttcgattca-cttcttcgtgtgtgggcttaccatttcttggttcgtttgtctgattgatttttggctttccagcttctcattgttttcattcatgggcttaccactttcgtttttttttccag

upper sequence: PP1S146_96V6.1 (Physcomitrella patens), 5'ss of exon 1
lower sequence: EFJ15194 (Selaginella moellendorffii), 5'ss of exon 2
TGGTTTTCATTGTTGATGTGCGGGCTGACAAGAAGAAGATCAAGGAGGCTGTCAAGAAGATGTATGACATCCAGACCAAGAAGGTCAACACATTGATCAGgtactcattatccccccttt------gttgttatgtc------------------ctccagtgcgttagggttaagcgtttc--agtctcttcgc--gattgaatt-gatatgttattcccacatgggt-------------------------------------
|||| ||||| || ||  | ||||| |||||||||||||||||| | || || |||| |||||| || ||||||||||||||||| |||||  |||||||||| || || |  |    ||      || ||  | ||                  || |   | ||  ||| | | ||||||   ||   || |   |||||| || |   |  ||    | ||| | |                                     
TGGTCTTCATCGTCGACATCCGGGCCGACAAGAAGAAGATCAAGAACGCCGTGAAGATGATGTACGATATCCAGACCAAGAAGGTGAACACGCTGATCAGgtaatctttctttctttctttcctcggtggtagtctcgtttgtcttttcaattcacttcttcgtgtgtgggcttaccgtttcttggttcttttgtctgattgattttggctttctagcttctcattgttttcattcatgggcttaccactttcttcttttttccag

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|208399857|gb|DC925167.1|DC925167
EST:     GTCAAGAAGATGTATGACATCCAGACCAAGAAGGTCAACACATTGATCAG                         ACCTGATGGAGCGAAGAAGGCTTATGTGAGGTTGACGGCAGATTACGACGC
genomic: GTCAAGAAGATGTATGACATCCAGACCAAGAAGGTCAACACATTGATCAGgtactcatta ... ttttccccagACCTGATGGAGCGAAGAAGGCTTATGTGAGGTTGACGGCAGATTACGACGC
EST: gi|208398372|gb|DC912329.1|DC912329
EST:     GTCAAGAAGATGTATGACATCCAGACCAAGAAGGTCAACACATTGATCAG                         ACCTGATGGAGCGAAGAAGGCTTATGTGAGGTTGACGGCAGATTACGACGC
genomic: GTCAAGAAGATGTATGACATCCAGACCAAGAAGGTCAACACATTGATCAGgtactcatta ... ttttccccagACCTGATGGAGCGAAGAAGGCTTATGTGAGGTTGACGGCAGATTACGACGC
EST: gi|67727814|gb|BJ978073.1|BJ978073
EST:     GTCAAGAAGATGTATGACATCCAGACCAAGAAGGTCAACACATTGATCAG                         ACCTGATGGAGCGAAGAAGGCTTATGTGAGGTTGACGGCAGATTACGACGC
genomic: GTCAAGAAGATGTATGACATCCAGACCAAGAAGGTCAACACATTGATCAGgtactcatta ... ttttccccagACCTGATGGAGCGAAGAAGGCTTATGTGAGGTTGACGGCAGATTACGACGC
EST: gi|67722991|gb|BJ973250.1|BJ973250
EST:     GTCAAGAAGATGTATGACATCCAGACCAAGAAGGTCAACACATTGATCAG                         ACCTGATGGAGCGAAGAAGGCTTATGTGAGGTTGACGGCAGATTACGACGC
genomic: GTCAAGAAGATGTATGACATCCAGACCAAGAAGGTCAACACATTGATCAGgtactcatta ... ttttccccagACCTGATGGAGCGAAGAAGGCTTATGTGAGGTTGACGGCAGATTACGACGC
EST: gi|67704477|gb|BJ964710.1|BJ964710
EST:     GTCAAGAAGATGTATGACATCCAGACCAAGAAGGTCAACACATTGATCAG                         ACCTGATGGAGCGAAGAAGGCTTATGTGAGGTTGACGGCAGATTACGACGC
genomic: GTCAAGAAGATGTATGACATCCAGACCAAGAAGGTCAACACATTGATCAGgtactcatta ... ttttccccagACCTGATGGAGCGAAGAAGGCTTATGTGAGGTTGACGGCAGATTACGACGC
EST: gi|67716865|gb|BJ967124.1|BJ967124
EST:     GTCAAGAAGATGTATGACATCCAGACCAAGAAGGTCAACACATTGATCAG                         ACCTGATGGAGCGAAGAAGGCTTATGTGAGGTTGACGGCAGATTACGACGC
genomic: GTCAAGAAGATGTATGACATCCAGACCAAGAAGGTCAACACATTGATCAGgtactcatta ... ttttccccagACCTGATGGAGCGAAGAAGGCTTATGTGAGGTTGACGGCAGATTACGACGC
EST: gi|162201830|gb|FC377764.1|FC377764
EST:     GTCAAGAAGATGTATGACATCCAGACCAAGAAGGTCAACACATTGATCAG                         ACCTGATGGAGCGAAGAAGGCTTATGTGAGGTTGACGGCAGATTACGACGC
genomic: GTCAAGAAGATGTATGACATCCAGACCAAGAAGGTCAACACATTGATCAGgtactcatta ... ttttccccagACCTGATGGAGCGAAGAAGGCTTATGTGAGGTTGACGGCAGATTACGACGC
EST: gi|208350133|gb|DC926102.1|DC926102
EST:     GTCAAGAAGATGTATGACATCCAGACCAAGAAGGTCAACACATTGATCAG                         ACCTGATGGAGCGAAGAAGGCTTATGTGAGGTTGACGGCAGATTACGACGC
genomic: GTCAAGAAGATGTATGACATCCAGACCAAGAAGGTCAACACATTGATCAGgtactcatta ... ttttccccagACCTGATGGAGCGAAGAAGGCTTATGTGAGGTTGACGGCAGATTACGACGC
EST: gi|162233649|gb|FC409408.1|FC409408
EST:     GTCAAGAAGATGTATGACATCCAGACCAAGAAGGTCAACACATTGATCAG                         ACCTGATGGAGCGAAGAAGGCTTATGTGAGGTTGACGGCAGATTACGACGC
genomic: GTCAAGAAGATGTATGACATCCAGACCAAGAAGGTCAACACATTGATCAGgtactcatta ... ttttccccagACCTGATGGAGCGAAGAAGGCTTATGTGAGGTTGACGGCAGATTACGACGC
EST: gi|19776550|gb|BQ039089.1|BQ039089
EST:     GTCAAGAAGATGTATGACATCCAGACCAAGAAGGTCAACACATTGATCAG                         ACCTGATGGAGCGAAGAAGGCTTATGTGAGGTTGACGGCAGATTACGACGC
genomic: GTCAAGAAGATGTATGACATCCAGACCAAGAAGGTCAACACATTGATCAGgtactcatta ... ttttccccagACCTGATGGAGCGAAGAAGGCTTATGTGAGGTTGACGGCAGATTACGACGC
EST: gi|67700694|gb|BJ960927.1|BJ960927
EST:     GTCAAGAAGATGTATGACATCCAGACCAAGAAGGTCAACACATTGATCAG                         ACCTGATGGAGCGAAGAAGGCTTATGTGAGGTTGACGGCAGATTACGACGC
genomic: GTCAAGAAGATGTATGACATCCAGACCAAGAAGGTCAACACATTGATCAGgtactcatta ... ttttccccagACCTGATGGAGCGAAGAAGGCTTATGTGAGGTTGACGGCAGATTACGACGC
EST: gi|208385108|gb|DC911368.1|DC911368
EST:     GTCAAGAAGATGTATGACATCCAGACCAAGAAGGTCAACACATTGATCAG                         ACCTGATGGAGCGAAGAAGGCTTATGTGAGGTTGACGGCAGATTACGACGC
genomic: GTCAAGAAGATGTATGACATCCAGACCAAGAAGGTCAACACATTGATCAGgtactcatta ... ttttccccagACCTGATGGAGCGAAGAAGGCTTATGTGAGGTTGACGGCAGATTACGACGC
EST: gi|162220184|gb|FC395435.1|FC395435
EST:     GTCAAGAAGATGTATGACATCCAGACCAAGAAGGTCAACACATTGATCAG                         ACCTGATGGAGCGAAGAAGGCTTATGTGAGGTTGACGGCAGATTACGACGC
genomic: GTCAAGAAGATGTATGACATCCAGACCAAGAAGGTCAACACATTGATCAGgtactcatta ... ttttccccagACCTGATGGAGCGAAGAAGGCTTATGTGAGGTTGACGGCAGATTACGACGC
EST: gi|67721231|gb|BJ971490.1|BJ971490
EST:     GTCAAGAAGATGTATGACATCCAGACCAAGAAGGTCAACACATTGATCAG                         ACCTGATGGAGCGAAGAAGGCTTATGTGAGGTTGACGGCAGATTACGACGC
genomic: GTCAAGAAGATGTATGACATCCAGACCAAGAAGGTCAACACATTGATCAGgtactcatta ... ttttccccagACCTGATGGAGCGAAGAAGGCTTATGTGAGGTTGACGGCAGATTACGACGC
EST: gi|37834080|gb|BJ592092.1|BJ592092
EST:     GTCAAGAAGATGTATGACATCCAGACCAAGAAGGTCAACACATTGATCAG                         ACCTGATGGAGCGAAGAAGGCTTATGTGAGGTTGACGGCAGATTACGACGC
genomic: GTCAAGAAGATGTATGACATCCAGACCAAGAAGGTCAACACATTGATCAGgtactcatta ... ttttccccagACCTGATGGAGCGAAGAAGGCTTATGTGAGGTTGACGGCAGATTACGACGC
EST: gi|67723464|gb|BJ973723.1|BJ973723
EST:     GTCAAGAAGATGTATGACATCCAGACCAAGAAGGTCAACACATTGATCAG                         ACCTGATGGAGCGAAGAAGGCTTATGTGAGGTTGACGGCAGATTACGACGC
genomic: GTCAAGAAGATGTATGACATCCAGACCAAGAAGGTCAACACATTGATCAGgtactcatta ... ttttccccagACCTGATGGAGCGAAGAAGGCTTATGTGAGGTTGACGGCAGATTACGACGC
EST: gi|18352653|gb|BJ184708.1|BJ184708
EST:     GTCAAGAAGATGTATGACATCCAGACCAAGAAGGTCAACACATTGATCAG                         ACCTGATGGAGCGAAGAAGGCTTATGTGAGGTTGACGGCAGATTACGACGC
genomic: GTCAAGAAGATGTATGACATCCAGACCAAGAAGGTCAACACATTGATCAGgtactcatta ... ttttccccagACCTGATGGAGCGAAGAAGGCTTATGTGAGGTTGACGGCAGATTACGACGC
EST: gi|162267486|gb|FC444237.1|FC444237
EST:     GTCAAGAAGATGTATGACATCCAGACCAAGAAGGTCAACACATTGATCAG                         ACCTGATGGAGCGAAGAAGGCTTATGTGAGGTTGACGGCAGATTACGACGC
genomic: GTCAAGAAGATGTATGACATCCAGACCAAGAAGGTCAACACATTGATCAGgtactcatta ... ttttccccagACCTGATGGAGCGAAGAAGGCTTATGTGAGGTTGACGGCAGATTACGACGC
EST: gi|67724076|gb|BJ974335.1|BJ974335
EST:     GTCAAGAAGATGTATGACATCCAGACCAAGAAGGTCAACACATTGATCAG                         ACCTGATGGAGCGAAGAAGGCTTATGTGAGGTTGACGGCAGATTACGACGC
genomic: GTCAAGAAGATGTATGACATCCAGACCAAGAAGGTCAACACATTGATCAGgtactcatta ... ttttccccagACCTGATGGAGCGAAGAAGGCTTATGTGAGGTTGACGGCAGATTACGACGC
EST: gi|18374403|gb|BJ205981.1|BJ205981
EST:     GTCAAGAAGATGTATGACATCCAGACCAAGAAGGTCAACACATTGATCAG                         ACCTGATGGAGCGAAGAAGGCTTATGTGAGGTTGACGGCAGATTACGACGC
genomic: GTCAAGAAGATGTATGACATCCAGACCAAGAAGGTCAACACATTGATCAGgtactcatta ... ttttccccagACCTGATGGAGCGAAGAAGGCTTATGTGAGGTTGACGGCAGATTACGACGC
EST: gi|162233650|gb|FC409409.1|FC409409
EST:     GTCAAGAAGATGTATGACATCCAGACCAAGAAGGTCAACACATTGATCAG                         ACCTGATGGAGCGAAGAAGGCTTATGTGAGGTTGACGGCAGATTACGACGC
genomic: GTCAAGAAGATGTATGACATCCAGACCAAGAAGGTCAACACATTGATCAGgtactcatta ... ttttccccagACCTGATGGAGCGAAGAAGGCTTATGTGAGGTTGACGGCAGATTACGACGC
EST: gi|67710001|gb|BJ965813.1|BJ965813
EST:     GTCAAGAAGATGTATGACATCCAGACCAAGAAGGTCAACACATTGATCAG                         ACCTGATGGAGCGAAGAAGGCTTATGTGAGGTTGACGGCAGATTACGACGC
genomic: GTCAAGAAGATGTATGACATCCAGACCAAGAAGGTCAACACATTGATCAGgtactcatta ... ttttccccagACCTGATGGAGCGAAGAAGGCTTATGTGAGGTTGACGGCAGATTACGACGC
EST: gi|67719542|gb|BJ969801.1|BJ969801
EST:     GTCAAGAAGATGTATGACATCCAGACCAAGAAGGTCAACACATTGATCAG                         ACCTGATGGAGCGAAGAAGGCTTATGTGAGGTTGACGGCAGATTACGACGC
genomic: GTCAAGAAGATGTATGACATCCAGACCAAGAAGGTCAACACATTGATCAGgtactcatta ... ttttccccagACCTGATGGAGCGAAGAAGGCTTATGTGAGGTTGACGGCAGATTACGACGC
EST: gi|67712880|gb|BJ966329.1|BJ966329
EST:     GTCAAGAAGATGTATGACATCCAGACCAAGAAGGTCAACACATTGATCAG                         ACCTGATGGAGCGAAGAAGGCTTATGTGAGGTTGACGGCAGATTACGACGC
genomic: GTCAAGAAGATGTATGACATCCAGACCAAGAAGGTCAACACATTGATCAGgtactcatta ... ttttccccagACCTGATGGAGCGAAGAAGGCTTATGTGAGGTTGACGGCAGATTACGACGC
EST: gi|19790315|gb|BQ041799.1|BQ041799
EST:     GTCAAGAAGATGTATGACATCCAGACCAAGAAGGTCAACACATTGATCAG                         ACCTGATGGAGCGAAGAAGGCTTATGTGAGGTTGACGGCAGATTACGACGC
genomic: GTCAAGAAGATGTATGACATCCAGACCAAGAAGGTCAACACATTGATCAGgtactcatta ... ttttccccagACCTGATGGAGCGAAGAAGGCTTATGTGAGGTTGACGGCAGATTACGACGC
EST: gi|7287398|gb|AW599885.1|AW599885
EST:     GTCAAGAAGATGTATGACATCCAGACCAAGAATGTCAACACATTGATCAG                         ACCTGATGGAGCGAAGAATGCTTATGTGACGCTGACCGCAGATTACGACGC
genomic: GTCAAGAAGATGTATGACATCCAGACCAAGAAGGTCAACACATTGATCAGgtactcatta ... ttttccccagACCTGATGGAGCGAAGAAGGCTTATGTGAGGTTGACGGCAGATTACGACGC
EST: gi|37844972|gb|BJ602980.1|BJ602980
EST:     GTCAAGAAGATGTATGACATCCAGACCAAGAAGGTCAACACATTGATCAG                         ACCTGATGGAGCGAAGAAGGCTTATGTGAGGTTGACGGCAGATTACGACGC
genomic: GTCAAGAAGATGTATGACATCCAGACCAAGAAGGTCAACACATTGATCAGgtactcatta ... ttttccccagACCTGATGGAGCGAAGAAGGCTTATGTGAGGTTGACGGCAGATTACGACGC
EST: gi|67718496|gb|BJ968755.1|BJ968755
EST:     GTCAAGAAGATGTATGACATCCAGACCAAGAAGGTCAACACATTGATCAG                         ACCTGATGGAGCGAAGAAGGCTTATGTGAGGTTGACGGCAGATTACGACGC
genomic: GTCAAGAAGATGTATGACATCCAGACCAAGAAGGTCAACACATTGATCAGgtactcatta ... ttttccccagACCTGATGGAGCGAAGAAGGCTTATGTGAGGTTGACGGCAGATTACGACGC
EST: gi|67720026|gb|BJ970285.1|BJ970285
EST:     GTCAAGAAGATGTATGACATCCAGACCAAGAAGGTCAACACATTGATCAG                         ACCTGATGGAGCGAAGAAGGCTTATGTGAGGTTGACGGCAGATTACGACGC
genomic: GTCAAGAAGATGTATGACATCCAGACCAAGAAGGTCAACACATTGATCAGgtactcatta ... ttttccccagACCTGATGGAGCGAAGAAGGCTTATGTGAGGTTGACGGCAGATTACGACGC
EST: gi|67728275|gb|BJ978534.1|BJ978534
EST:     GTCAAGAAGATGTATGACATCCAGACCAAGAAGGTCAACACATTGATCAG                         ACCTGATGGAGCGAAGAAGGCTTATGTGAGGTTGACGGCAGATTACGACGC
genomic: GTCAAGAAGATGTATGACATCCAGACCAAGAAGGTCAACACATTGATCAGgtactcatta ... ttttccccagACCTGATGGAGCGAAGAAGGCTTATGTGAGGTTGACGGCAGATTACGACGC
EST: gi|67720018|gb|BJ970277.1|BJ970277
EST:     GTCAAGAAGATGTATGACATCCAGACCAAGAAGGTCAACACATTGATCAG                         ACCTGATGGAGCGAAGAAGGCTTATGTGAGGTTGACGGCAGATTACGACGC
genomic: GTCAAGAAGATGTATGACATCCAGACCAAGAAGGTCAACACATTGATCAGgtactcatta ... ttttccccagACCTGATGGAGCGAAGAAGGCTTATGTGAGGTTGACGGCAGATTACGACGC
EST: gi|67720187|gb|BJ970446.1|BJ970446
EST:     GTCAAGAAGATGTATGACATCCAGACCAAGAAGGTCAACACATTGATCAG                         ACCTGATGGAGCGAAGAAGGCTTATGTGAGGTTGACGGCAGATTACGACGC
genomic: GTCAAGAAGATGTATGACATCCAGACCAAGAAGGTCAACACATTGATCAGgtactcatta ... ttttccccagACCTGATGGAGCGAAGAAGGCTTATGTGAGGTTGACGGCAGATTACGACGC
EST: gi|67577823|gb|BJ949990.1|BJ949990
EST:     GTCAAGAAGATGTATGACATCCAGACCAAGAAGGTCAACACATTGATCAG                         ACCTGATGGAGCGAAGAAGGCTTATGTGAGGTTGACGGCAGATTACGACGC
genomic: GTCAAGAAGATGTATGACATCCAGACCAAGAAGGTCAACACATTGATCAGgtactcatta ... ttttccccagACCTGATGGAGCGAAGAAGGCTTATGTGAGGTTGACGGCAGATTACGACGC
EST: gi|37828480|gb|BJ586492.1|BJ586492
EST:     GTCAAGAAGATGTATGACATCCAGACCAAGAAGGTCAACACATTGATCAG                         ACCTGATGGAGCGAAGAAGGCTTATGTGAGGTTGACGGCAGATTACGACGC
genomic: GTCAAGAAGATGTATGACATCCAGACCAAGAAGGTCAACACATTGATCAGgtactcatta ... ttttccccagACCTGATGGAGCGAAGAAGGCTTATGTGAGGTTGACGGCAGATTACGACGC
EST: gi|67726944|gb|BJ977203.1|BJ977203
EST:     GTCAAGAAGATGTATGACATCCAGACCAAGAAGGTCAACACATTGATCAG                         ACCTGATGGAGCGAAGAAGGCTTATGTGAGGTTGACGGCAGATTACGACGC
genomic: GTCAAGAAGATGTATGACATCCAGACCAAGAAGGTCAACACATTGATCAGgtactcatta ... ttttccccagACCTGATGGAGCGAAGAAGGCTTATGTGAGGTTGACGGCAGATTACGACGC
EST: gi|67725382|gb|BJ975641.1|BJ975641
EST:     GTCAAGAAGATGTATGACATCCAGACCAAGAAGGTCAACACATTGATCAG                         ACCTGATGGAGCGAAGAAGGCTTATGTGAGGTTGACGGCAGATTACGACGC
genomic: GTCAAGAAGATGTATGACATCCAGACCAAGAAGGTCAACACATTGATCAGgtactcatta ... ttttccccagACCTGATGGAGCGAAGAAGGCTTATGTGAGGTTGACGGCAGATTACGACGC
EST: gi|67709388|gb|BJ965204.1|BJ965204
EST:     GTCAAGAAGATGTATGACATCCAGACCAAGAAGGTCAACACATTGATCAG                         ACCTGATGGAGCGAAGAAGGCTTATGTGAGGTTGACGGCAGATTACGACGC
genomic: GTCAAGAAGATGTATGACATCCAGACCAAGAAGGTCAACACATTGATCAGgtactcatta ... ttttccccagACCTGATGGAGCGAAGAAGGCTTATGTGAGGTTGACGGCAGATTACGACGC
EST: gi|67724587|gb|BJ974846.1|BJ974846
EST:     GTCAAGAAGATGTATGACATCCAGACCAAGAAGGTCAACACATTGATCAG                         ACCTGATGGAGCGAAGAAGGCTTATGTGAGGTTGACGGCAGATTACGACGC
genomic: GTCAAGAAGATGTATGACATCCAGACCAAGAAGGTCAACACATTGATCAGgtactcatta ... ttttccccagACCTGATGGAGCGAAGAAGGCTTATGTGAGGTTGACGGCAGATTACGACGC

RNA-Seq data


 ATGC   Supported by RNA-Seq exonic block that spans over the splice site

 atgs   Truncated intron sequence

Each block is as long as the maximal overhang of any read spanning the junction.
The score is the number of alignments spanning the junction.


Found data for 1 RNA-Seqlibrary.


Block sizes: 35 (upstream exon), 35 (downstream exon)
Score: 33

TGGTTTTCATTGTTGATGTGCGGGCTGACAAGAAGAAGATCAAGGAGGCTGTCAAGAAGATGTATGACATCCAGACCAAGAAGGTCAACACATTGATCAGgtactcatta ... ttttccccagACCTGATGGAGCGAAGAAGGCTTATGTGAGGTTGACGGCAGATTACGACGCTCTTGATGTTGCCAACAAGATTGGCATCATTTAGATTGCATTGCTCTTA




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Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
TGGTTTTCATTGTTGATGTGCGGGCTGACAAGAAGAAGATCAAGGAGGCTGTCAAGAAGATGTATGACATCCAGACCAAGAAGGTCAACACATTGATCAGgtactcattatcccccctttgttgttatgtcctccagtgcgttagggttaagcgtttcagtctcttcgcgattgaattgatatgttattcccacatgggt

- - - - - - - - - - - - - - - - - - - - - - - - - -  AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  AAGAAG