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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CAAGGAGAAGGAAGCTGTGGAATGCAAGGCCGCCATGGAGGCTAAGCTGCGCTTGGTTGGCAACTTGGTGCACGACTCCGTGCCTGTGGATAACAATGAGgtaggcgtcgtggagtttttgggtcgattttggtttctatggacggagttcttggttgatttttgagagagcaggagcctttatctgttaggatggattctagcgtttaattcagtatccttactcaaacaatggctgtttacaatttccagtgtgggttttgtggaacag

Basic information

species Physcomitrella patens
transcript PP1S142_120V6.1
intron # 1
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|208399121|gb|DC912392.1|DC912392
EST:     GCTTGGTTGGCAACTTGGTGCACGACTCCGTGCCTGTGGATAACAATGAG                         GACAATAACCAGGTCGTTCGGAAATGGGGAACTCTTAGAGAAGAAGCCGGC
genomic: GCTTGGTTGGCAACTTGGTGCACGACTCCGTGCCTGTGGATAACAATGAGgtaggcgtcg ... tgtggaacagGACAATAACCAGGTCGTTCGGAAATGGGGAACTCTTAGAGAAGAAGCCGGC
EST: gi|67718504|gb|BJ968763.1|BJ968763
EST:     GCTTGGTTGGCAACTTGGTGCACGACTCCGTGCCTGTGGATAACAATGAG                         GACAATAACCAGGTCGTTCGGAAATGGGGAACTCTTANAGAAGAAGCCGGC
genomic: GCTTGGTTGGCAACTTGGTGCACGACTCCGTGCCTGTGGATAACAATGAGgtaggcgtcg ... tgtggaacagGACAATAACCAGGTCGTTCGGAAATGGGGAACTCTTAGAGAAGAAGCCGGC
EST: gi|100447765|gb|CJ972064.1|CJ972064
EST:     GCTTGGTTGGCAACTTGGTGCACGACTCCGTGCCTGTGGATAACAATGAG                         GACAATAACCAGGTCGTTCGGAAATGGGGAACTCTTAGAGAAGAAGCCGGC
genomic: GCTTGGTTGGCAACTTGGTGCACGACTCCGTGCCTGTGGATAACAATGAGgtaggcgtcg ... tgtggaacagGACAATAACCAGGTCGTTCGGAAATGGGGAACTCTTAGAGAAGAAGCCGGC
EST: gi|18361483|gb|BJ193549.1|BJ193549
EST:     GCTTGGTTGGCAACTTGGTGCACGACTCCGTGCCTGTGGATAACAATGAG                         GACAATAACCAGGTCGTTCGGAAATGGGGAACTCTTAGAGA
genomic: GCTTGGTTGGCAACTTGGTGCACGACTCCGTGCCTGTGGATAACAATGAGgtaggcgtcg ... tgtggaacagGACAATAACCAGGTCGTTCGGAAATGGGGAACTCTTAGAGA
EST: gi|100364655|gb|BY947842.1|BY947842
EST:     GCTTGGTTGGCAACTTGGTGCACGACTCCGTGCCTGTGGATAACAATGAG                         GACAATAACCAGGTCGTTCGGAAATGGGGAACTCTTAGAGAAGAAGCCGGC
genomic: GCTTGGTTGGCAACTTGGTGCACGACTCCGTGCCTGTGGATAACAATGAGgtaggcgtcg ... tgtggaacagGACAATAACCAGGTCGTTCGGAAATGGGGAACTCTTAGAGAAGAAGCCGGC
EST: gi|208394382|gb|DC942542.1|DC942542
EST:     GCTTGGTTGGCAACTTGGTGCACGACTCCGTGCCTGTGGATAACAATGAG                         GACAATAACCAGGTCGTTCGGAAATGGGGAACTCTTAGAGAAGAAGCCGGC
genomic: GCTTGGTTGGCAACTTGGTGCACGACTCCGTGCCTGTGGATAACAATGAGgtaggcgtcg ... tgtggaacagGACAATAACCAGGTCGTTCGGAAATGGGGAACTCTTAGAGAAGAAGCCGGC
EST: gi|100448482|gb|CJ972781.1|CJ972781
EST:     GCTTGGTTGGCAACTTGGTGCACGACTCCGTGCCTGTGGATAACAATGAG                         GACAATAACCAGGTCGTTCGGAAATGGGGAACTCTTAGAGAAGAAGCCGGC
genomic: GCTTGGTTGGCAACTTGGTGCACGACTCCGTGCCTGTGGATAACAATGAGgtaggcgtcg ... tgtggaacagGACAATAACCAGGTCGTTCGGAAATGGGGAACTCTTAGAGAAGAAGCCGGC
EST: gi|100447644|gb|CJ971943.1|CJ971943
EST:     GCTTGGTTGGCAACTTGGTGCACGACTCCGTGCCTGTGGATAACAATGAG                         GACAATAACCAGGTCGTTCGGAAATGGGGAACTCTTAGAGAAGAAGCCGGC
genomic: GCTTGGTTGGCAACTTGGTGCACGACTCCGTGCCTGTGGATAACAATGAGgtaggcgtcg ... tgtggaacagGACAATAACCAGGTCGTTCGGAAATGGGGAACTCTTAGAGAAGAAGCCGGC
EST: gi|100446744|gb|CJ971043.1|CJ971043
EST:     GCTTGGTTGGCAACTTGGTGCACGACTCCGTGCCTGTGGATAACAATGAG                         GACAATAACCAGGTCGTTCGGAAATGGGGAACTCTTAGAGAAGAAGCCGGC
genomic: GCTTGGTTGGCAACTTGGTGCACGACTCCGTGCCTGTGGATAACAATGAGgtaggcgtcg ... tgtggaacagGACAATAACCAGGTCGTTCGGAAATGGGGAACTCTTAGAGAAGAAGCCGGC
EST: gi|100394755|gb|BY989909.1|BY989909
EST:     GCTTGGTTGGCAACTTGGTGCACGACTCCGTGCCTGTGGATAACAATGAG                         GACAATAACCAGGTCGTTCGGAAATGGGGAACTCTTAGAGAAGAAGCCGGC
genomic: GCTTGGTTGGCAACTTGGTGCACGACTCCGTGCCTGTGGATAACAATGAGgtaggcgtcg ... tgtggaacagGACAATAACCAGGTCGTTCGGAAATGGGGAACTCTTAGAGAAGAAGCCGGC
EST: gi|208384748|gb|DC915281.1|DC915281
EST:     GCTTGGTTGGCAACTTGGTGCACGACTCCGTGCCTGTGGATAACAATGAN                         GACAATAACCAGGTCGTTCGGAAATGGGGAACTCTTATAGAAGAAGCCGGC
genomic: GCTTGGTTGGCAACTTGGTGCACGACTCCGTGCCTGTGGATAACAATGAGgtaggcgtcg ... tgtggaacagGACAATAACCAGGTCGTTCGGAAATGGGGAACTCTTAGAGAAGAAGCCGGC
EST: gi|162179840|gb|FC355911.1|FC355911
EST:     GCTTGGTTGGCAACTTGGTGCACGACTCCGTGCCTGTGGATAACAATGAG                         GACAATAACCAGGTCGTTCGGAAATGGGGAACTCTTAGAGAAGAAGCCGGC
genomic: GCTTGGTTGGCAACTTGGTGCACGACTCCGTGCCTGTGGATAACAATGAGgtaggcgtcg ... tgtggaacagGACAATAACCAGGTCGTTCGGAAATGGGGAACTCTTAGAGAAGAAGCCGGC
EST: gi|67717323|gb|BJ967582.1|BJ967582
EST:     GCTTGGTTGGCAACTTGGTGCACGACTCCGTGCCTGTGGATAACAATGAG                         GACAATAACCAGGTCGTTCGGAAATGGGGAACTCTTANAGAAGAAGCCGGC
genomic: GCTTGGTTGGCAACTTGGTGCACGACTCCGTGCCTGTGGATAACAATGAGgtaggcgtcg ... tgtggaacagGACAATAACCAGGTCGTTCGGAAATGGGGAACTCTTAGAGAAGAAGCCGGC
EST: gi|67574064|gb|BJ946888.1|BJ946888
EST:     GCTTGGTTGGCAACTTGGTGCACGACTCCGTGCCTGTGGATAACAATGAG                         GACAATAACCAGGTCGTTCGGAAATGGGGAACTCTTAGAGAAGAAGCCGGC
genomic: GCTTGGTTGGCAACTTGGTGCACGACTCCGTGCCTGTGGATAACAATGAGgtaggcgtcg ... tgtggaacagGACAATAACCAGGTCGTTCGGAAATGGGGAACTCTTAGAGAAGAAGCCGGC