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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TTGCAGCGACTAGTGTACAGTTTGTTCACTACCCTCGATCCCGTTGCAAAAATACTGGCCGGAAGGAGTTGAGTCTCCTTCGAAACGCAGAATTTGCTAGgtcccggcactgccctcctctccccatgttgacagaagcataattgatcgctgactaataacgcaaaagcgtcaattcactcgatcgcctcgaaaatact...

Basic information

species Physcomitrella patens
transcript PP1S138_43V6.1
intron # 1
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|18358981|gb|BJ191041.1|BJ191041
EST:     AATACTGGCCGGAAGGAGTTGAGTCTCCTTCGAAACGCAGAATTTGCTAG                         ATTTTCAAGGATGGCTAGCGTTGGAGGTTTGTGCGAGCGAGACCTACTACC
genomic: AATACTGGCCGGAAGGAGTTGAGTCTCCTTCGAAACGCAGAATTTGCTAGgtcccggcac ... ctgggtgcagATTTTCAAGGATGGCTAGCGTTGGAGGTTTGTGCGAGCGAGACCTACTACC
EST: gi|18347417|gb|BJ179463.1|BJ179463
EST:     AATACTGGCCGGAAGGAGTTGAGTCTCCTTCGAAACGCAGAATTTGCTAG                         ATTTTCAAGGATGGCTAGCGTTGGAGGTTTGTGCGAGCGAGACCTACTACC
genomic: AATACTGGCCGGAAGGAGTTGAGTCTCCTTCGAAACGCAGAATTTGCTAGgtcccggcac ... ctgggtgcagATTTTCAAGGATGGCTAGCGTTGGAGGTTTGTGCGAGCGAGACCTACTACC
EST: gi|18369005|gb|BJ201090.1|BJ201090
EST:     AATACTGGCCGGAAGGAGTTGAGTCTCCTTCGAAACGCAGAATTTGCTAG                         ATTTTCAAGGATGGCTAGCGTTGGAGGTTTGTGCG
genomic: AATACTGGCCGGAAGGAGTTGAGTCTCCTTCGAAACGCAGAATTTGCTAGgtcccggcac ... ctgggtgcagATTTTCAAGGATGGCTAGCGTTGGAGGTTTGTGCG
EST: gi|208389033|gb|DC937366.1|DC937366
EST:     AATACTGGCCGGAAGGAGTTGAGTCTCCTTCGAAACGCAGAATTTGCTAG                         ATTTTCAAGGATGGCTAGCGTTGGAGGTTTGTGCGAGCGAGACCTACTACC
genomic: AATACTGGCCGGAAGGAGTTGAGTCTCCTTCGAAACGCAGAATTTGCTAGgtcccggcac ... ctgggtgcagATTTTCAAGGATGGCTAGCGTTGGAGGTTTGTGCGAGCGAGACCTACTACC
EST: gi|208397502|gb|DC908322.1|DC908322
EST:     AATACTGGCCGGAAGGAGTTGAGTCTCCTTCGAAACGCAGAATTTGCTAG                         ATTTTCAAGGATGGCTAGCGTTGGAGGTTTGTGCGAGCGAGACCTACTACC
genomic: AATACTGGCCGGAAGGAGTTGAGTCTCCTTCGAAACGCAGAATTTGCTAGgtcccggcac ... ctgggtgcagATTTTCAAGGATGGCTAGCGTTGGAGGTTTGTGCGAGCGAGACCTACTACC
EST: gi|208353132|gb|DC913890.1|DC913890
EST:     AATACTGGCCGGAAGGAGTTGAGTCTCCTTCGAAACGCAGAATTTGCTAG                         ATTTTCAAGGATGGCTAGCGTTGGAGGTTTGTGCGAGCGAGACCTACTACC
genomic: AATACTGGCCGGAAGGAGTTGAGTCTCCTTCGAAACGCAGAATTTGCTAGgtcccggcac ... ctgggtgcagATTTTCAAGGATGGCTAGCGTTGGAGGTTTGTGCGAGCGAGACCTACTACC
EST: gi|100385660|gb|BY987725.1|BY987725
EST:     AATACTGGCCGGAAGGAGTTGAGTCTCCTTCTAAACGCAAAATTTGCTAG                         ATTTTCAAGGATGGCTAGCGTTGGAGGTTTGTGCGAGCGAGACCTACTACC
genomic: AATACTGGCCGGAAGGAGTTGAGTCTCCTTCGAAACGCAGAATTTGCTAGgtcccggcac ... ctgggtgcagATTTTCAAGGATGGCTAGCGTTGGAGGTTTGTGCGAGCGAGACCTACTACC
EST: gi|208358936|gb|DC939220.1|DC939220
EST:     AATACTGGCCGGAAGGAGTTGAGTCTCCTTCGAAACGCAGAATTTGCTAG                         ATTTTCAAGGATGGCTAGCGTTGGAGGTTTGTGCGAGCGAGACCTACTACC
genomic: AATACTGGCCGGAAGGAGTTGAGTCTCCTTCGAAACGCAGAATTTGCTAGgtcccggcac ... ctgggtgcagATTTTCAAGGATGGCTAGCGTTGGAGGTTTGTGCGAGCGAGACCTACTACC
EST: gi|100429318|gb|BY978050.1|BY978050
EST:     AATACTGGCCGGAAGGAGTTGAGTCTCCTTCGAAACGCAGAATTTGCTAG                         ATTTTCAAGGATGGCTAGCGTTGGAGGTTTGTGCGAGCGAGACCTACTACC
genomic: AATACTGGCCGGAAGGAGTTGAGTCTCCTTCGAAACGCAGAATTTGCTAGgtcccggcac ... ctgggtgcagATTTTCAAGGATGGCTAGCGTTGGAGGTTTGTGCGAGCGAGACCTACTACC
EST: gi|100436724|gb|BY979494.1|BY979494
EST:     AATACTGGCCGGAAGGAGTTGAGTCTCCTTCGAAACGCAGAATTTGCTAG                         ATTTTCAAGGATGGCTAGCGTTGGAGGTTTGTGCGAGCGAGACCTACTACC
genomic: AATACTGGCCGGAAGGAGTTGAGTCTCCTTCGAAACGCAGAATTTGCTAGgtcccggcac ... ctgggtgcagATTTTCAAGGATGGCTAGCGTTGGAGGTTTGTGCGAGCGAGACCTACTACC
EST: gi|208391614|gb|DC938227.1|DC938227
EST:     AATACTGGCCGGAAGGAGTTGAGTCTCCTTCGAAACGCANAATTTGCTAG                         ATTTTCAAGGATGGCTAGCGTTGGAGGTTTGTGCGAGCGAGACCTACTACC
genomic: AATACTGGCCGGAAGGAGTTGAGTCTCCTTCGAAACGCAGAATTTGCTAGgtcccggcac ... ctgggtgcagATTTTCAAGGATGGCTAGCGTTGGAGGTTTGTGCGAGCGAGACCTACTACC
EST: gi|208384210|gb|DC911304.1|DC911304
EST:     AATACTGGCCGGAAGGAGTTGAGTCTCCTTCGAAACGCAGAATTTGCTAN                         ATTTTCAAGGATGGCTAGCGTTGGAGGTTTGTGCGAGCGAGACCTACTACC
genomic: AATACTGGCCGGAAGGAGTTGAGTCTCCTTCGAAACGCAGAATTTGCTAGgtcccggcac ... ctgggtgcagATTTTCAAGGATGGCTAGCGTTGGAGGTTTGTGCGAGCGAGACCTACTACC
EST: gi|18349770|gb|BJ181820.1|BJ181820
EST:     AATACTGGCCGGAAGGAGTTGAGTCTCCTTCGAAACGCAGAATTTGCTAG                         ATTTTCAAGGATGGCTAGCGTTGGAGGTTTGTGCGAGCGAGACCTACTACC
genomic: AATACTGGCCGGAAGGAGTTGAGTCTCCTTCGAAACGCAGAATTTGCTAGgtcccggcac ... ctgggtgcagATTTTCAAGGATGGCTAGCGTTGGAGGTTTGTGCGAGCGAGACCTACTACC
EST: gi|208367215|gb|DC935819.1|DC935819
EST:     AATACTGGCCGGAAGGAGTTGAGTCTCCTTCGAAACGCAGAATTTGCTAG                         ATTTTCAAGGATGGCTAGCGTTGGAGGTTTGTGCGAGCGAGACCTACTACC
genomic: AATACTGGCCGGAAGGAGTTGAGTCTCCTTCGAAACGCAGAATTTGCTAGgtcccggcac ... ctgggtgcagATTTTCAAGGATGGCTAGCGTTGGAGGTTTGTGCGAGCGAGACCTACTACC
EST: gi|18362193|gb|BJ194262.1|BJ194262
EST:     AATACTGGCCGGAAGGAGTTGAGTCTCCTTCGAAACGCAGAATTTGCTAG                         ATTTTCAAGGATGGCTAGCGTTGGAGGTTTGTGCGAGCGAGACCTACTACC
genomic: AATACTGGCCGGAAGGAGTTGAGTCTCCTTCGAAACGCAGAATTTGCTAGgtcccggcac ... ctgggtgcagATTTTCAAGGATGGCTAGCGTTGGAGGTTTGTGCGAGCGAGACCTACTACC
EST: gi|208389798|gb|DC937433.1|DC937433
EST:     AATACTGGCCGGAAGGAGTTGAGTCTCCTTCGAAACGCAGAATTTGCTAG                         ATTTTCAAGGATGGCTAGCGTTGGAGGTTTGTGCGAGCGAGACCTACTACC
genomic: AATACTGGCCGGAAGGAGTTGAGTCTCCTTCGAAACGCAGAATTTGCTAGgtcccggcac ... ctgggtgcagATTTTCAAGGATGGCTAGCGTTGGAGGTTTGTGCGAGCGAGACCTACTACC
EST: gi|18370142|gb|BJ201744.1|BJ201744
EST:     AATACTGGCCGGAAGGAGTTGAGTCTCCTTCGAAACGCAGAATTTGCTAG                         ATTTTCAAGGATGGCTAGCGTTGGAGGTTTGTGCGAGCGAGACCTACTACC
genomic: AATACTGGCCGGAAGGAGTTGAGTCTCCTTCGAAACGCAGAATTTGCTAGgtcccggcac ... ctgggtgcagATTTTCAAGGATGGCTAGCGTTGGAGGTTTGTGCGAGCGAGACCTACTACC

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
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---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
TTGCAGCGACTAGTGTACAGTTTGTTCACTACCCTCGATCCCGTTGCAAAAATACTGGCCGGAAGGAGTTGAGTCTCCTTCGAAACGCAGAATTTGCTAGgtcccggcactgccctcctctccccatgttgacagaagcataattgatcgctgactaataacgcaaaagcgtcaattcactcgatcgcctcgaaaatact

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