1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
CGGTCTCACTTTATGGCTGGTAGCGCTGTGAATGTGTTGGACGAGGCTTATGTTCGCTGCGGCGAGGTTTGTGCTGAGTACTCGAAGACCTTCTATCTGGgtaagaccaccttcctctctcttgacgtcttacattcttgctttcggcctcgccattttcaagattatcaccggcaattcaccttcttcacttggttttcatccaagagtgcaaccaggatattgcaactaagctgtggtattgttcgatattgatgacag
species | Physcomitrella patens |
transcript | PP1S134_62V6.2 |
intron # | 1 |
splice site | 5' |
intron type | U2 |
EST: TGTTCGCTGCGGCGAGGTTTGTGCTGAGTACTCGAAGACCTTCTATCTGG GAACGAAGCTTATGACTCCGGAAAGGCAACGTGCEST: gi|162217988|gb|FC393672.1|FC393672
genomic: TGTTCGCTGCGGCGAGGTTTGTGCTGAGTACTCGAAGACCTTCTATCTGGgtaagaccac ... ttgatgacagGAACGAAGCTTATGACTCCGGAAAGGCAACGTGC
EST: TGTTCGCTGCGGCGAGGTTTGTGCTGAGTACTCGAAGACCTTCTATCTGG GAACGAAGCTTATGACTCCGGAAAGGCAACGTGCCATTTGGGCCATATATG
genomic: TGTTCGCTGCGGCGAGGTTTGTGCTGAGTACTCGAAGACCTTCTATCTGGgtaagaccac ... ttgatgacagGAACGAAGCTTATGACTCCGGAAAGGCAACGTGCCATTTGGGCTATATATG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| CGGTCTCACTTTATGGCTGGTAGCGCTGTGAATGTGTTGGACGAGGCTTATGTTCGCTGCGGCGAGGTTTGTGCTGAGTACTCGAAGACCTTCTATCTGGgtaagaccaccttcctctctcttgacgtcttacattcttgctttcggcctcgccattttcaagattatcaccggcaattcaccttcttcacttggttttcatccaagagtgcaaccaggatattgcaactaagctgtggtattgttcgatattgatgacag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CGAAGA