Skip to another splice site:
1  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CAAGGCCGTTATCATCCACGTGCCCTACCGCCTGCGGAAGGCTTTTCAGAAAATCCACGCTCGCCTTGTTAGAGAGCTGGAGAAGAAGTTCAGCGGCAAGgtgggtgctggcttccgaattgttgtgtcgggatggattgatttagtttttaagcagccgagttcaggtctcttgtcaagtctctttcctgctgttgttcagaggtgcacacatttgggagtgtcgctgaaatgtagttttgtcaaattagggttctgctataatatcactcgtaaaaatcccccttgttatttttgcag

Basic information

species Physcomitrella patens
transcript PP1S134_167V6.1
intron # 1
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: PP1S134_167V6.1 (Physcomitrella patens), 5'ss of exon 1
lower sequence: LOC_Os03g18570.1 (Oryza sativa), 5'ss of exon 4
CAAGGCCGTTATCATCCACGTGCCCTACCGCCTGCGGAAGGCTTTTCAGAAAATCCACGCTCGCCTTGTTAGAGAGCTGGAGAAGAAGTTCAGCGGCAAGgtgggtgctggcttccgaattgttgtgtcgggatggattgatttagtttttaagcagccgagttcaggtctcttg-tcaagtctctttcctgctgttgttcagaggtgcacacatttgggagtgtcgctgaaatgtagttttgtcaaattagggttctgctataatatcactcgtaaaaatcccccttgttatttttgcag
 ||||| ||  | ||||||||||| ||||| ||||| ||||| ||  |||||||||| |   | ||||| || ||||| |||||||||||||||||||||||   |   | ||| |  |||  | |   | | || || | |    |  |         |||||||  |  ||   |||     | ||  || |  |  | |  | |                                                                                              
GAAGGCTGTGGTGATCCACGTGCCGTACCGTCTGCGCAAGGCATTCAAGAAAATCCATGTCAGGCTTGTCAGGGAGCTCGAGAAGAAGTTCAGCGGCAAGgtcaattacgtctttcccatttgtctactgtgttgcataggtcgcatgctag-------gagttcaatttactaactcataatacattgttgttagttcttaatgtt----------------------------------------------------------------------------------------------

upper sequence: PP1S134_167V6.1 (Physcomitrella patens), 5'ss of exon 1
lower sequence: LOC_Os03g18580.1 (Oryza sativa), 5'ss of exon 3
CAAGGCCGTTATCATCCACGTGCCCTACCGCCTGCGGAAGGCTTTTCAGAAAATCCACGCTCGCCTTGTTAGAGAGCTGGAGAAGAAGTTCAGCGGCAAGgtgggtgctggcttccgaattgttgtgtcgggatggattgatttagtttttaagcagccgagttcaggtctcttg-tcaagtctctttcctgctgttgttcagaggtgcacacatttgggagtgtcgctgaaatgtagttttgtcaaattagggttctgctataatatcactcgtaaaaatcccccttgttatttttgcag
 ||||| ||  | || |||||||| ||||| ||||| ||||| ||  |||||||||| |   | ||||| || ||||| ||||||||||||||||||||||||  |   |  ||||    |  |||  |    |   ||    ||| ||  | ||  |  || |||  |  ||   ||      | ||  || || |  | |                                                                                                   
GAAGGCTGTGGTGATTCACGTGCCGTACCGTCTGCGCAAGGCATTCAAGAAAATCCATGTCAGGCTTGTCAGGGAGCTCGAGAAGAAGTTCAGCGGCAAGgtgaattacgttttcctgcct--tgtcaccttttttttttgcataggttgcatgctact-agctcaatttactaactcgtaatacatttttgttggttcttaa--------------------------------------------------------------------------------------------------

upper sequence: PP1S134_167V6.1 (Physcomitrella patens), 5'ss of exon 1
lower sequence: GRMZM2G458974_T03 (Zea mays), 5'ss of exon 1
CAAGGCCGTTATCATCCACGTGCCCTACCGCCTGCGGAAGGCTTTTCAGAAAATCCACGCTCGCCTTGTTAGAGAGCTGGAGAAGAAGTTCAGCGGCAAGgtgggtg-ctggcttccgaattgttgtgtcgggatggattgatttagtttttaagcagccgagttcaggtctcttgtcaagtctctttcctgctgttgttcagaggtgcacacatttgggagtgtcgctgaaatgtagttttgtcaaattagggttctgctataatatcactcgtaaaaatcccccttgttatttttgcag
 ||||| ||| |||||||||| || ||||||||||| ||||| |||  ||| ||||| |   | || || || |||||||||||||| |||||||||||||||  |  ||   ||     || || |   |   |   | | |||||                                                                                                                                                          
GAAGGCTGTTGTCATCCACGTCCCATACCGCCTGCGCAAGGCCTTTAGGAAGATCCATGTCAGACTCGTCAGGGAGCTGGAGAAGAAATTCAGCGGCAAGgtgattttctctttttttgttttttctactgctgttcgt-ggtttag----------------------------------------------------------------------------------------------------------------------------------------------------------

upper sequence: PP1S134_167V6.1 (Physcomitrella patens), 5'ss of exon 1
lower sequence: GRMZM2G458974_T02 (Zea mays), 5'ss of exon 4
CAAGGCCGTTATCATCCACGTGCCCTACCGCCTGCGGAAGGCTTTTCAGAAAATCCACGCTCGCCTTGTTAGAGAGCTGGAGAAGAAGTTCAGCGGCAAGgtgggtg-ctggcttccgaattgttgtgtcgggatggattgatttagtttttaagcagccgagttcaggtctcttgtcaagtctctttcctgctgt-tgttcagaggtgcacacatttgggagtgtcgctgaaatgtagttttgtcaaattagggttctgctataatatcactcgtaaaaatcccccttgttatttttgcag
 ||||| ||| |||||||||| || ||||||||||| ||||| |||  ||| ||||| |   | || || || |||||||||||||| |||||||||||||||  |  ||   ||     || || |   |   |   | | ||  |||| || ||     | ||   |   ||    ||  ||       |   |   || ||                                                                                                  
GAAGGCTGTTGTCATCCACGTCCCATACCGCCTGCGCAAGGCCTTTAGGAAGATCCATGTCAGACTCGTCAGGGAGCTGGAGAAGAAATTCAGCGGCAAGgtgattttctctttttttgttttttctactgctgttcgtggtttaggtttatatgct----aattgtagctactacataaacctgaacggggtaatgcatttag--------------------------------------------------------------------------------------------------

upper sequence: PP1S134_167V6.1 (Physcomitrella patens), 5'ss of exon 1
lower sequence: GRMZM2G085420_T01 (Zea mays), 5'ss of exon 5
CAAGGCCGTTATCATCCACGTGCCCTACCGCCTGCGGAAGGCTTTTCAGAAAATCCACGCTCGCCTTGTTAGAGAGCTGGAGAAGAAGTTCAGCGGCAAGgtgggtgctggcttccgaattgttgtgtcgggatggattgatttagtttttaagcagccgagttcaggtctcttgtcaagtctctttcctgctgttgttcagaggtgcacacatttgggagtgtcgctgaaatgtagttttgtcaaattagggttctgctataatatcactcgtaaaaatcccccttgttatttttgcag
 ||||| ||| |||||||||| || ||||||||||| ||||| |||  ||| ||||| |   | || || || |||||||||||||| |||||||||||||||  |      ||     || || |   |   |   | | ||  |||| || ||    || |  || |      | ||  |     |  | |  ||     ||                                                                                                
GAAGGCTGTTGTCATCCACGTCCCATACCGCCTGCGCAAGGCCTTTAGGAAGATCCATGTCAGACTCGTCAGGGAGCTGGAGAAGAAATTCAGCGGCAAGgtgattttctcttttttgttttttctactgttgttcgtggtttaggtttatatgc---tgattgtagctactacataaa--cctgaacggggtaatgcatttagt-----------------------------------------------------------------------------------------------

upper sequence: PP1S134_167V6.1 (Physcomitrella patens), 5'ss of exon 1
lower sequence: GRMZM2G030016_T01 (Zea mays), 5'ss of exon 4
CAAGGCCGTTATCATCCACGTGCCCTACCGCCTGCGGAAGGCTTTTCAGAAAATCCACGCTCGCCTTGTTAGAGAGCTGGAGAAGAAGTTCAGCGGCAAGgtgggtgctggcttccgaattgttgtgtcgggatggat-tgatttagtttttaagcagccgagttcaggtctcttgtcaagtctctttcctgctgttgttcagaggtgcacacatttgggagtgtcgctgaaatgtagttttgtcaaattagggttctgctataatatcactcgtaaaaatcccccttgttatttttgcag
 ||||| ||| |||||||||| || ||||||||||| ||||| ||   ||| ||||| |   | || || || |||||||||||||| |||||||||||||||  |      ||    ||| || | |   | ||    || ||||| |||  |   ||  | |  || |      | ||    | |    |  ||  | ||                                                                                                   
GAAGGCTGTTGTCATCCACGTCCCATACCGCCTGCGCAAGGCCTTCAGGAAGATCCATGTCAGACTCGTCAGGGAGCTGGAGAAGAAATTCAGCGGCAAGgtgaatttctcgttttttatttttttctactgctgttcatggtttaggtttatatatgctaattgtagctactacataaa----catgaacggggtaatgcatt-------------------------------------------------------------------------------------------------

upper sequence: PP1S134_167V6.1 (Physcomitrella patens), 5'ss of exon 1
lower sequence: GRMZM2G053652_T02 (Zea mays), 5'ss of exon 3
CAAGGCCGTTATCATCCACGTGCCCTACCGCCTGCGGAAGGCTTTTCAGAAAATCCACGCTCGCCTTGTTAGAGAGCTGGAGAAGAAGTTCAGCGGCAAGgtgggtgctggcttccgaattgttgtgtcgggatggattgatttagtttttaagcagccgagttcaggtctcttgtcaagtctctttcctgctgttgttcagaggtgcacacatttgggagtgtcgctgaaatgtagttttgtcaaattagggttctgctataatatcactcgtaaaaatcccccttgttatttttgcag
 ||||| ||| | |||||||| || |||||| |||| ||||| ||   ||| ||||| |   |  | || || |||||||||||||| |||||||||||||||  |      ||     | ||| |   |     |   ||   ||| | || ||     | ||   |   ||    ||| ||    |  | |  ||     || |||                                                                                            
GAAGGCTGTTGTGATCCACGTCCCATACCGCTTGCGTAAGGCCTTCAGGAAGATCCATGTCAGGATCGTCAGGGAGCTGGAGAAGAAATTCAGCGGCAAGgtgaatttctcgttttttttggttttactgctgctgtccga---agtgtatatgct----aattgtagcaactgcataag-cttgaacggggtaatggatttagttgc--------------------------------------------------------------------------------------------

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|37853503|gb|BJ611511.1|BJ611511
EST:     AATCCACGCTTCGCCTTGTTAGAGAGCTGGAGAAGAAGTTCAGCGGCAAG                         GATGTTGTTATCATCGCCACCAGGCGTATCTTGAGACCCCCGAAGAAGGGC
genomic: AATCCACGC-TCGCCTTGTTAGAGAGCTGGAGAAGAAGTTCAGCGGCAAGgtgggtgctg ... atttttgcagGATGTTGTTATCATCGCCACCAGGCGTATCTTGAGACCCCCGAAGAAGGGC
EST: gi|67716474|gb|BJ966734.1|BJ966734
EST:     AAATCCACGCTCGCCTTGTTAGAGAGCTGGAGAAGAAGTTCAGCGGCAAG                         GATGTTGTTATCATCGCCACCAGGCGTATCTTGAGACCCCCGAAGAAGGGC
genomic: AAATCCACGCTCGCCTTGTTAGAGAGCTGGAGAAGAAGTTCAGCGGCAAGgtgggtgctg ... atttttgcagGATGTTGTTATCATCGCCACCAGGCGTATCTTGAGACCCCCGAAGAAGGGC
EST: gi|208399280|gb|DC916607.1|DC916607
EST:     AATCCACGCTCGCCTTGTTAGAGAGCTGGAGAAGNAGTTCAGCGGGCAAG                         GATGTTGNTATCATCGCCACCAGGCGTATCTTGAGACCCCCGAAGAAGGG
genomic: AATCCACGCTCGCCTTGTTAGAGAGCTGGAGAAGAAGTTCAGC-GGCAAGgtgggtgctg ... atttttgcagGATGTTGTTATCATCGCCACCAGGCGTATCTTGAGACCCCCGAAGAAGGG
EST: gi|162260856|gb|FC438212.1|FC438212
EST:     AAATCCACGCTCGCCTTGTTAGAGAGCTGGAGAAGAAGTTCAGCGGCAAG                         GATGTTGTTATCATCGCCACCAGGCGTATCTTGAGACCCCCGAAGAAGGGC
genomic: AAATCCACGCTCGCCTTGTTAGAGAGCTGGAGAAGAAGTTCAGCGGCAAGgtgggtgctg ... atttttgcagGATGTTGTTATCATCGCCACCAGGCGTATCTTGAGACCCCCGAAGAAGGGC
EST: gi|18371417|gb|BJ203019.1|BJ203019
EST:     AAATCCACGCTCGCCTTGTTAGAGAGCTGGAGAAGAAGTTCAGCGGCAAG                         GATGTTGTTATCATCGCCACCAGGCGTATCTTGAGACCCCCGAAGAAGGGC
genomic: AAATCCACGCTCGCCTTGTTAGAGAGCTGGAGAAGAAGTTCAGCGGCAAGgtgggtgctg ... atttttgcagGATGTTGTTATCATCGCCACCAGGCGTATCTTGAGACCCCCGAAGAAGGGC
EST: gi|208389715|gb|DC933617.1|DC933617
EST:     AAATCCACGCTCGCCTTGTTAGAGAGCTGGAGAAGAAGTTCAGCGGCAAG                         GATGTTGTTATCATCGCCACCAGGCGTATCTTGAGACCCCCGAAGAAGGGC
genomic: AAATCCACGCTCGCCTTGTTAGAGAGCTGGAGAAGAAGTTCAGCGGCAAGgtgggtgctg ... atttttgcagGATGTTGTTATCATCGCCACCAGGCGTATCTTGAGACCCCCGAAGAAGGGC
EST: gi|37828793|gb|BJ586805.1|BJ586805
EST:     AAATCCACGCTCGCCTTGTTAGAGAGCTGGAGAAGAAGTTCAGCGGCAAG                         GATGTTGTTATCATCGCCACCAGGCGTATCTTGAGACCCCCGAAGAAGGGC
genomic: AAATCCACGCTCGCCTTGTTAGAGAGCTGGAGAAGAAGTTCAGCGGCAAGgtgggtgctg ... atttttgcagGATGTTGTTATCATCGCCACCAGGCGTATCTTGAGACCCCCGAAGAAGGGC
EST: gi|162209725|gb|FC385659.1|FC385659
EST:     AAATCCACGCTCGCCTTGTTAGAGAGCTGGAGAAGAAGTTCAGCGGCAAG                         GATGTTGTTATCATCGCCACCAGGCGTATCTTGAGACCCCCGAAGAAGGGC
genomic: AAATCCACGCTCGCCTTGTTAGAGAGCTGGAGAAGAAGTTCAGCGGCAAGgtgggtgctg ... atttttgcagGATGTTGTTATCATCGCCACCAGGCGTATCTTGAGACCCCCGAAGAAGGGC
EST: gi|67724988|gb|BJ975247.1|BJ975247
EST:     AAATCCACGCTCGCCTTGTTAGAGAGCTGGAGAAGAAGTTCAGCGGCAAG                         GATGTTGTTATCATCGCCACCAGGCGTATCTTGAGACCCCCGAAGAAGGGC
genomic: AAATCCACGCTCGCCTTGTTAGAGAGCTGGAGAAGAAGTTCAGCGGCAAGgtgggtgctg ... atttttgcagGATGTTGTTATCATCGCCACCAGGCGTATCTTGAGACCCCCGAAGAAGGGC
EST: gi|162268460|gb|FC444333.1|FC444333
EST:     AAATCCACGCTCGCCTTGTTAGAGAGCTGGAGAAGAAGTTCAGCGTCAAG                         GATGTTGTTATCATCGCCACCAGGCGTATCTTGAGACCCCCGAAGAAGGGC
genomic: AAATCCACGCTCGCCTTGTTAGAGAGCTGGAGAAGAAGTTCAGCGGCAAGgtgggtgctg ... atttttgcagGATGTTGTTATCATCGCCACCAGGCGTATCTTGAGACCCCCGAAGAAGGGC
EST: gi|162209726|gb|FC385660.1|FC385660
EST:     AAATCCACGCTCGCCTTGTTAGAGAGCTGGAGAAGAAGTTCAGCGGCAAG                         GATGTTGTTATCATCGCCACCAGGCGTATCTTGAGACCCCCGAAGAAGGGC
genomic: AAATCCACGCTCGCCTTGTTAGAGAGCTGGAGAAGAAGTTCAGCGGCAAGgtgggtgctg ... atttttgcagGATGTTGTTATCATCGCCACCAGGCGTATCTTGAGACCCCCGAAGAAGGGC
EST: gi|18327104|gb|BJ159105.1|BJ159105
EST:     AAATCCACGCTCGCCTTGTTAGAGAGCTGGAGAAGAAGTTCAGCGGCAAG                         GATGTTGTTATCATCGCCACCAGGCGTATCTTGAGACCCCCGAAGAAGGGC
genomic: AAATCCACGCTCGCCTTGTTAGAGAGCTGGAGAAGAAGTTCAGCGGCAAGgtgggtgctg ... atttttgcagGATGTTGTTATCATCGCCACCAGGCGTATCTTGAGACCCCCGAAGAAGGGC
EST: gi|100405991|gb|BY991485.1|BY991485
EST:     AAATCCACGCTCGCCTTGTTAGAGAGCTGGAGAAGAAGTTCAGCGGCAAG                         GATGTTGTTATCATCGCCACCAGGCGTATCTTGAGACCCCCGAAGAAGGGC
genomic: AAATCCACGCTCGCCTTGTTAGAGAGCTGGAGAAGAAGTTCAGCGGCAAGgtgggtgctg ... atttttgcagGATGTTGTTATCATCGCCACCAGGCGTATCTTGAGACCCCCGAAGAAGGGC
EST: gi|18360127|gb|BJ192189.1|BJ192189
EST:     AAATCCACGCTCGCCTTGTTAGAGAGCTGGAGAAGAAGTTCAGCGGCAAG                         GATGTTGTTATCATCGCCACCAGGCGTATCTTGAGACCCCCGAAGAAGGGC
genomic: AAATCCACGCTCGCCTTGTTAGAGAGCTGGAGAAGAAGTTCAGCGGCAAGgtgggtgctg ... atttttgcagGATGTTGTTATCATCGCCACCAGGCGTATCTTGAGACCCCCGAAGAAGGGC
EST: gi|37851586|gb|BJ609594.1|BJ609594
EST:     AAATCCACGCTCGCCTTGTTAGAGAGCTGGAGAAGAAGTTCAGCGGCAAG                         GATGTTGTTATCATCGCCACCAGGCGTATCTTGAGACCCCCGAAGAAGGGC
genomic: AAATCCACGCTCGCCTTGTTAGAGAGCTGGAGAAGAAGTTCAGCGGCAAGgtgggtgctg ... atttttgcagGATGTTGTTATCATCGCCACCAGGCGTATCTTGAGACCCCCGAAGAAGGGC
EST: gi|67709360|gb|BJ965176.1|BJ965176
EST:     AAATCCACGCTCGCCTTGTTAGAGAGCTGGAGAAGAAGTTCAGCGGCAAG                         GATGTTGTTATCATCGCCACCAGGCGTATCTTGAGACCCCCGAAGAAGGGC
genomic: AAATCCACGCTCGCCTTGTTAGAGAGCTGGAGAAGAAGTTCAGCGGCAAGgtgggtgctg ... atttttgcagGATGTTGTTATCATCGCCACCAGGCGTATCTTGAGACCCCCGAAGAAGGGC
EST: gi|100444396|gb|BY982425.1|BY982425
EST:     AAATCCACGCTCGCCTTGTTAGAGAGCTGGAGAAGAAGTTCAGCGGCAAG                         GATGTTGTTATCATCGCCACCAGGCGTATCTTGAGACCCCCGAAGAAGGGC
genomic: AAATCCACGCTCGCCTTGTTAGAGAGCTGGAGAAGAAGTTCAGCGGCAAGgtgggtgctg ... atttttgcagGATGTTGTTATCATCGCCACCAGGCGTATCTTGAGACCCCCGAAGAAGGGC
EST: gi|100370392|gb|BY985387.1|BY985387
EST:     AAATCCACGCTCGCCTTGTTAGAGAGCTGGAGAAGAAGTTCAGCGGCAAG                         GATGTTGTTATCATCGCCACCAGGCGTATCTTGAGACCCCCGAAGAAGGGC
genomic: AAATCCACGCTCGCCTTGTTAGAGAGCTGGAGAAGAAGTTCAGCGGCAAGgtgggtgctg ... atttttgcagGATGTTGTTATCATCGCCACCAGGCGTATCTTGAGACCCCCGAAGAAGGGC
EST: gi|67727278|gb|BJ977537.1|BJ977537
EST:     AAATCCACGCTCGCCTTGTTAGAGAGCTGGAGAAGAAGTTCAGCGGCAAG                         GATGTTGTTATCATCGCCACCAGGCGTATCTTGAGACCCCCGAAGAAGGGC
genomic: AAATCCACGCTCGCCTTGTTAGAGAGCTGGAGAAGAAGTTCAGCGGCAAGgtgggtgctg ... atttttgcagGATGTTGTTATCATCGCCACCAGGCGTATCTTGAGACCCCCGAAGAAGGGC
EST: gi|18354366|gb|BJ186422.1|BJ186422
EST:     AAATCCACGCTCGCCTTGTTAGAGAGCTGGAGAAGAAGTTCAGCGGCAAG                         GATGTTGTTATCATCGCCACCAGGCGTATCTTGAGACCCCCGAAGAAGGGC
genomic: AAATCCACGCTCGCCTTGTTAGAGAGCTGGAGAAGAAGTTCAGCGGCAAGgtgggtgctg ... atttttgcagGATGTTGTTATCATCGCCACCAGGCGTATCTTGAGACCCCCGAAGAAGGGC
EST: gi|100376473|gb|BY986184.1|BY986184
EST:     AAATCCACGCTCGCCTTGTTAGAGAGCTGGAGAAGAAGTTCAGCGGCAAG                         GATGTTGTTATCATCGCCACCAGGCGTATCTTGAGACCCCCGAAGAAGGGC
genomic: AAATCCACGCTCGCCTTGTTAGAGAGCTGGAGAAGAAGTTCAGCGGCAAGgtgggtgctg ... atttttgcagGATGTTGTTATCATCGCCACCAGGCGTATCTTGAGACCCCCGAAGAAGGGC
EST: gi|162260857|gb|FC438213.1|FC438213
EST:     AAATCCACGCTCGCCTTGTTAGAGAGCTGGAGAAGAAGTTCAGCGGCAAG                         GATGTTGTTATCATCGCCACCAGGCGTATCTTGAGACCCCCGAAGAAGGGC
genomic: AAATCCACGCTCGCCTTGTTAGAGAGCTGGAGAAGAAGTTCAGCGGCAAGgtgggtgctg ... atttttgcagGATGTTGTTATCATCGCCACCAGGCGTATCTTGAGACCCCCGAAGAAGGGC
EST: gi|162274971|gb|FC450622.1|FC450622
EST:     AAATCCACGCTCGCCTTGTTAGAGAGCTGGAGAAGAAGTTCAGCGGCAAG                         GATGTTGTTATCATCGCCACCAGGCGTATCTTGAGACCCCCGAAGAAGGGC
genomic: AAATCCACGCTCGCCTTGTTAGAGAGCTGGAGAAGAAGTTCAGCGGCAAGgtgggtgctg ... atttttgcagGATGTTGTTATCATCGCCACCAGGCGTATCTTGAGACCCCCGAAGAAGGGC
EST: gi|19779928|gb|BQ039490.1|BQ039490
EST:     AAATCCACGCTCGCCTTGTTAGAGAACTGGAGAAGAAGTTCAGCGGCAAG                         GATGTTGTTATCATCGCCACCAGGCGTATCTTGAGACCCCCGAAGAAGGGC
genomic: AAATCCACGCTCGCCTTGTTAGAGAGCTGGAGAAGAAGTTCAGCGGCAAGgtgggtgctg ... atttttgcagGATGTTGTTATCATCGCCACCAGGCGTATCTTGAGACCCCCGAAGAAGGGC
EST: gi|208365875|gb|DC947757.1|DC947757
EST:     AAATCCACGCTCGCCTTGTTAGAGAGCTGGAGAAGAAGTTCAGCGGCAAG                         GATGTTGTTATCATCGCCACCAGGCGTATCTTGAGACCCCCGAAGAAGGGC
genomic: AAATCCACGCTCGCCTTGTTAGAGAGCTGGAGAAGAAGTTCAGCGGCAAGgtgggtgctg ... atttttgcagGATGTTGTTATCATCGCCACCAGGCGTATCTTGAGACCCCCGAAGAAGGGC
EST: gi|18335382|gb|BJ167401.1|BJ167401
EST:     TTCAGCGGCAAG                         GATGTTGTTATCATCGCCACCAGGCGTATCTTGAGACCCCCGAAGAAGGGC
genomic: TTCAGCGGCAAGgtgggtgctg ... atttttgcagGATGTTGTTATCATCGCCACCAGGCGTATCTTGAGACCCCCGAAGAAGGGC
EST: gi|18343673|gb|BJ175711.1|BJ175711
EST:     AAATCCACGCTCGCCTTGTTAGAGAGCTGGAGAAGAAGTTCAGCGGCAAG                         GATGTTGTTATCATCGCCACCAGGCGTATCTTGAGACCCCCGAAGAAGGGC
genomic: AAATCCACGCTCGCCTTGTTAGAGAGCTGGAGAAGAAGTTCAGCGGCAAGgtgggtgctg ... atttttgcagGATGTTGTTATCATCGCCACCAGGCGTATCTTGAGACCCCCGAAGAAGGGC
EST: gi|162268459|gb|FC444332.1|FC444332
EST:     AAATCCACGCTCGCCTTGTTAGAGAGCTGGAGAAGAAGTTCAGCGTCAAG                         GATGTTGTTATCATCGCCACCAGGCGTATCTTGAGACCCCCGAAGAAGGGC
genomic: AAATCCACGCTCGCCTTGTTAGAGAGCTGGAGAAGAAGTTCAGCGGCAAGgtgggtgctg ... atttttgcagGATGTTGTTATCATCGCCACCAGGCGTATCTTGAGACCCCCGAAGAAGGGC

RNA-Seq data


 ATGC   Supported by RNA-Seq exonic block that spans over the splice site

 atgs   Truncated intron sequence

Each block is as long as the maximal overhang of any read spanning the junction.
The score is the number of alignments spanning the junction.


Found data for 1 RNA-Seqlibrary.


Block sizes: 35 (upstream exon), 35 (downstream exon)
Score: 29

CAAGGCCGTTATCATCCACGTGCCCTACCGCCTGCGGAAGGCTTTTCAGAAAATCCACGCTCGCCTTGTTAGAGAGCTGGAGAAGAAGTTCAGCGGCAAGgtgggtgctg ... atttttgcagGATGTTGTTATCATCGCCACCAGGCGTATCTTGAGACCCCCGAAGAAGGGCTCAGCCGTCAACCGCCCAAGGAGCAGGACCCTGACAGCCGTGCACGAGG




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Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
CAAGGCCGTTATCATCCACGTGCCCTACCGCCTGCGGAAGGCTTTTCAGAAAATCCACGCTCGCCTTGTTAGAGAGCTGGAGAAGAAGTTCAGCGGCAAGgtgggtgctggcttccgaattgttgtgtcgggatggattgatttagtttttaagcagccgagttcaggtctcttgtcaagtctctttcctgctgttgttcagaggtgcacacatttgggagtgtcgctgaaatgtagttttgtcaaattagggttctgctataatatcactcgtaaaaatcccccttgttatttttgcag

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  GCTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  TGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  AGAAGT