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 5'  3'   		2  
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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TGCAGCGCTTGCGCTAAACCGCTTCGCCACCATGTCGATCAGTGAGGTCGCCTGCACTTACGCCTGCCTCATTCTTCACGACGATGGCATCGCCATCACGgtacgcacgactgtcgaaccctaacttatcgttcgagttagggtttggttggagttttctcgttcgcattagtttgtagtttgtgcgtgctgtcgtggtt...

Basic information

species Physcomitrella patens
transcript PP1S134_153V6.1
intron # 1
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: PP1S134_153V6.1 (Physcomitrella patens), 5'ss of exon 1
lower sequence: LOC_Os08g02340.2 (Oryza sativa), 5'ss of exon 1
TGCAGCGCTTGCGCTAAACCGC-TTCGCCACCATGTCGATCAGTGAGGTCGCCTGCACTTACGCCTGCCTCATTCTTCACGACGATGGCATCGCCATCACGgtacgc-acgac-tgtcgaaccctaactt-atcgttcgagttagggtttggttggagttttctcgttcgcattagtt-tgtagtttgtgcgtgctgtcgtggtt-----
   ||  | |     |   ||   ||||| ||||||||  ||| ||||||||||||||   ||||  |||||| || ||||||||||||||| ||||||| || ||  || ||   |  | ||||| ||| ||  | |   |   || ||||   |  |||  |   |   |||  || | || |||||  ||| | | |||        
-AGAGTTCGTAGATCAGCTCGAGCTCGCCGCCATGTCGTCCAGCGAGGTCGCCTGCACGCTCGCCGCCCTCATCCTCCACGACGATGGCATCCCCATCACCgtgcgttactacaccttcacccctatcttgattttgcttttcttggcttggggtggatttggtgtgtgagattgattatttattttgttggtgatttggtgacgagcag

upper sequence: PP1S134_153V6.1 (Physcomitrella patens), 5'ss of exon 1
lower sequence: LOC_Os08g02340.1 (Oryza sativa), 5'ss of exon 2
TGCAGCGCTTGCGCTAAACCGC-TTCGCCACCATGTCGATCAGTGAGGTCGCCTGCACTTACGCCTGCCTCATTCTTCACGACGATGGCATCGCCATCACGgtacgc-acgac-tgtcgaaccctaactt-atcgttcgagttagggtttggttggagttttctcgttcgcattagtt-tgtagtttgtgcgtgctgtcgtggtt-----
   ||  | |     |   ||   ||||| ||||||||  ||| ||||||||||||||   ||||  |||||| || ||||||||||||||| ||||||| || ||  || ||   |  | ||||| ||| ||  | |   |   || ||||   |  |||  |   |   |||  || | || |||||  ||| | | |||        
---AGTTCGTAGATCAGCTCGAGCTCGCCGCCATGTCGTCCAGCGAGGTCGCCTGCACGCTCGCCGCCCTCATCCTCCACGACGATGGCATCCCCATCACCgtgcgttactacaccttcacccctatcttgattttgcttttcttggcttggggtggatttggtgtgtgagattgattatttattttgttggtgatttggtgacgagcag

upper sequence: PP1S134_153V6.1 (Physcomitrella patens), 5'ss of exon 1
lower sequence: EFJ07677 (Selaginella moellendorffii), 5'ss of exon 1
TGCAGCGCTTGCGCTAAACCGCTTCGCCACCATGTCGATCAGTGAGGTCGCCTGCACTTACGCCTGCCTCATTCTTCACGACGATGGCATCGCCATCACGgtacgcacgactgtcgaaccctaacttatcgttcgagttagggtttggttggagttttctcgttcgcattagtttgtagtttgtgcgtgctgtcgtggtt
                                   | ||  | |||   || ||||| || |||   || || |||||||||||||| ||||||||||||||| || | |     || | |||  |     || |     |   ||| | |   |  |  || | | |                                
----------------------------------GCAATGGGAGAGACTGCTTGCACGTATGCCGCTCTAATCCTTCACGACGATGGGATCGCCATCACGgtaagcgcta-----gagctctagat-----tttggacgcgaaattgatcg--atcgtggcgctggaacag-----------------------------

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|208386958|gb|DC941620.1|DC941620
EST:     CCTGCACTTACGCCTGCCTCATTCTTCACGACGATGGCATCGCCATCACG                         GCCGACAAGATCGCTGCTTTGGTTAAAGCCGCGAATGTCTCAGTTGAGGGA
genomic: CCTGCACTTACGCCTGCCTCATTCTTCACGACGATGGCATCGCCATCACGgtacgcacga ... aatgaattagGCCGACAAGATCGCTGCTTTGGTTAAAGCCGCGAATGTCTCAGTTGAGGGA
EST: gi|67569446|gb|BJ942270.1|BJ942270
EST:     CCTGCACTTACGCCTGCCTCATTCTTCACGACGATGGCATCGCCATCACG                         GCCGACAAGATCGCTGCTTTGGTTAAAGCCGCGAATGTCTCAGTTGAGGGA
genomic: CCTGCACTTACGCCTGCCTCATTCTTCACGACGATGGCATCGCCATCACGgtacgcacga ... aatgaattagGCCGACAAGATCGCTGCTTTGGTTAAAGCCGCGAATGTCTCAGTTGAGGGA
EST: gi|19786234|gb|BQ040452.1|BQ040452
EST:     CCTGCACTTACGCCTGCCTCATTCTTCACGACGATGGCATCGCCATCACG                         GCCGACAAGATCGCTGCTTTGGTTAAAGCCGCGAATGTCTCAGTTGAGGGA
genomic: CCTGCACTTACGCCTGCCTCATTCTTCACGACGATGGCATCGCCATCACGgtacgcacga ... aatgaattagGCCGACAAGATCGCTGCTTTGGTTAAAGCCGCGAATGTCTCAGTTGAGGGA
EST: gi|18361441|gb|BJ193507.1|BJ193507
EST:     CCTGCACTTACGCCTGCCTCATTCTTCACGACGATGGCATCGCCATCACG                         GCCGACAAGATCGCTGCTTTGGTTAAAGCCGCGAATGTCTCAGTTGAGGGA
genomic: CCTGCACTTACGCCTGCCTCATTCTTCACGACGATGGCATCGCCATCACGgtacgcacga ... aatgaattagGCCGACAAGATCGCTGCTTTGGTTAAAGCCGCGAATGTCTCAGTTGAGGGA
EST: gi|19789984|gb|BQ041627.1|BQ041627
EST:     CCTGCACTTACGCCTGCCTCATTCTTCACGACGATGGCATCGCCATCACG                         GCCGACAAGATCGCTGCTTTGGTTAAAGCCGCGAATGTCTCAGTTGAGGGA
genomic: CCTGCACTTACGCCTGCCTCATTCTTCACGACGATGGCATCGCCATCACGgtacgcacga ... aatgaattagGCCGACAAGATCGCTGCTTTGGTTAAAGCCGCGAATGTCTCAGTTGAGGGA
EST: gi|37839158|gb|BJ597166.1|BJ597166
EST:     CCTGCACTTACGCCTGCCTCATTCTTCACGACGATGGCATCGCCATCACG                         GCCGACAAGATCGCTGCTTTGGTTAAAGCCGCGAATGTCTCAGTTGAGGGA
genomic: CCTGCACTTACGCCTGCCTCATTCTTCACGACGATGGCATCGCCATCACGgtacgcacga ... aatgaattagGCCGACAAGATCGCTGCTTTGGTTAAAGCCGCGAATGTCTCAGTTGAGGGA
EST: gi|18340971|gb|BJ173003.1|BJ173003
EST:     CCTGCACTTACGCCTGCCTCATTCTTCACGACGATGGCATCGCCATCACG                         GCCGACAAGATCGCTGCTTTGGTTAAAGCCGCGAATGTCTCAGTTGAGGGA
genomic: CCTGCACTTACGCCTGCCTCATTCTTCACGACGATGGCATCGCCATCACGgtacgcacga ... aatgaattagGCCGACAAGATCGCTGCTTTGGTTAAAGCCGCGAATGTCTCAGTTGAGGGA
EST: gi|18349653|gb|BJ181703.1|BJ181703
EST:     CCTGCACTTACGCCTGCCTCATTCTTCACGACGATGGCATCGCCATCACG                         GCCGACAAGATCGCTGCTTTGGTTAAAGCCGCGAATGTCTCAGTTGAGGGA
genomic: CCTGCACTTACGCCTGCCTCATTCTTCACGACGATGGCATCGCCATCACGgtacgcacga ... aatgaattagGCCGACAAGATCGCTGCTTTGGTTAAAGCCGCGAATGTCTCAGTTGAGGGA
EST: gi|162258234|gb|FC434633.1|FC434633
EST:     CCTGCACTTACGCCTGCCTCATTCTTCACGACGATGGCATCGCCATCACG                         GCCGACAAGATCGCTGCTTTGGTTAAAGCCGCGAATGTCTCAGTTGAGGGA
genomic: CCTGCACTTACGCCTGCCTCATTCTTCACGACGATGGCATCGCCATCACGgtacgcacga ... aatgaattagGCCGACAAGATCGCTGCTTTGGTTAAAGCCGCGAATGTCTCAGTTGAGGGA
EST: gi|162204466|gb|FC381694.1|FC381694
EST:     CCTGCACTTACGCCTGCCTCATTCTTCACGACGATGGCATCGCCATCACG                         GCCGACAAGATCGCTGCTTTGGTTAAAGCCGCGAATGTCTCAGTTGAGGGA
genomic: CCTGCACTTACGCCTGCCTCATTCTTCACGACGATGGCATCGCCATCACGgtacgcacga ... aatgaattagGCCGACAAGATCGCTGCTTTGGTTAAAGCCGCGAATGTCTCAGTTGAGGGA
EST: gi|67722675|gb|BJ972934.1|BJ972934
EST:     CCTGCACTTACGCCTGCCTCATTCTTCACGACGATGGCATCGCCATCACG                         GCCGACAAGATCGCTGCTTTGGTTAAAGCCGCGAATGTCTCAGTTGAGGGA
genomic: CCTGCACTTACGCCTGCCTCATTCTTCACGACGATGGCATCGCCATCACGgtacgcacga ... aatgaattagGCCGACAAGATCGCTGCTTTGGTTAAAGCCGCGAATGTCTCAGTTGAGGGA
EST: gi|67702146|gb|BJ962379.1|BJ962379
EST:     CCTGCACTTACGCCTGCCTCATTCTTCACGACGATGGCATCGCCATCACG                         GCCGACAAGATCGCTGCTTTGGTTAAAGCCGCGAATGTCTCAGTTGAGGGA
genomic: CCTGCACTTACGCCTGCCTCATTCTTCACGACGATGGCATCGCCATCACGgtacgcacga ... aatgaattagGCCGACAAGATCGCTGCTTTGGTTAAAGCCGCGAATGTCTCAGTTGAGGGA
EST: gi|162224345|gb|FC400176.1|FC400176
EST:     CCTGCACTTACGCCTGCCTCATTCTTCACGACGATGGCATCGCCATCACG                         GCCGACAAGATCGCTGCTTTGGTTAAAGCCGCGAATGTCTCAGTTGAGGGA
genomic: CCTGCACTTACGCCTGCCTCATTCTTCACGACGATGGCATCGCCATCACGgtacgcacga ... aatgaattagGCCGACAAGATCGCTGCTTTGGTTAAAGCCGCGAATGTCTCAGTTGAGGGA
EST: gi|208362372|gb|DC954618.1|DC954618
EST:     CCTGCACTTACGCCTGCCTCATTCTTCACGACGATGGCATCGCCATCACG                         GCCGACAAGATCGCTGCTTTGGTTAAAGCCGCGAATGTCTCAGTTGAGGGA
genomic: CCTGCACTTACGCCTGCCTCATTCTTCACGACGATGGCATCGCCATCACGgtacgcacga ... aatgaattagGCCGACAAGATCGCTGCTTTGGTTAAAGCCGCGAATGTCTCAGTTGAGGGA
EST: gi|162215005|gb|FC391293.1|FC391293
EST:     CCTGCACTTACGCCTGCCTCATTCTTCACGACGATGGCATCGCCATCACG                         GCCGACAAGATCGCTGCTTTGGTTAAAGCCGCGAATGTCTCAGTTGAGGGA
genomic: CCTGCACTTACGCCTGCCTCATTCTTCACGACGATGGCATCGCCATCACGgtacgcacga ... aatgaattagGCCGACAAGATCGCTGCTTTGGTTAAAGCCGCGAATGTCTCAGTTGAGGGA
EST: gi|67709370|gb|BJ965186.1|BJ965186
EST:     CCTGCACTTACGCCTGCCTCATTCTTCACGACGATGGCATCGCCATCACG                         GCCGACAAGATCGCTGCTTTGGTTAAAGCCGCGAATGTCTCAGTTGAGGGA
genomic: CCTGCACTTACGCCTGCCTCATTCTTCACGACGATGGCATCGCCATCACGgtacgcacga ... aatgaattagGCCGACAAGATCGCTGCTTTGGTTAAAGCCGCGAATGTCTCAGTTGAGGGA
EST: gi|67704162|gb|BJ964395.1|BJ964395
EST:     CCTGCACTTACGCCTGCCTCATTCTTCACGACGATGGCATCGCCATCACG                         GCCGACAAGATCGCTGCTTTGGTTAAAGCCGCGAATGTCTCAGTTGAGGGA
genomic: CCTGCACTTACGCCTGCCTCATTCTTCACGACGATGGCATCGCCATCACGgtacgcacga ... aatgaattagGCCGACAAGATCGCTGCTTTGGTTAAAGCCGCGAATGTCTCAGTTGAGGGA
EST: gi|37852333|gb|BJ610341.1|BJ610341
EST:     CCTGCACTTACGCCTGCCTCATTCTTCACGACGATGGCATCGCCATCACG                         GCCGACAAGATCGCTGCTTTGGTTAAAGCCGCGAATGTCTCAGTTGAGGGA
genomic: CCTGCACTTACGCCTGCCTCATTCTTCACGACGATGGCATCGCCATCACGgtacgcacga ... aatgaattagGCCGACAAGATCGCTGCTTTGGTTAAAGCCGCGAATGTCTCAGTTGAGGGA
EST: gi|67720641|gb|BJ970900.1|BJ970900
EST:     CCTGCACTTACGCCTGCCTCATTCTTCACGACGATGGCATCGCCATCACG                         GCCGACAAGATCGCTGCTTTGGTTAAAGCCGCGAATGTCTCAGTTGAGGGA
genomic: CCTGCACTTACGCCTGCCTCATTCTTCACGACGATGGCATCGCCATCACGgtacgcacga ... aatgaattagGCCGACAAGATCGCTGCTTTGGTTAAAGCCGCGAATGTCTCAGTTGAGGGA
EST: gi|67703195|gb|BJ963428.1|BJ963428
EST:     CCTGCACTTACGCCTGCCTCATTCTTCACGACGATGGCATCGCCATCACG                         GCCGACAAGATCGCTGCTTTGGTTAAAGCCGCGAATGTCTCAGTTGAGGGA
genomic: CCTGCACTTACGCCTGCCTCATTCTTCACGACGATGGCATCGCCATCACGgtacgcacga ... aatgaattagGCCGACAAGATCGCTGCTTTGGTTAAAGCCGCGAATGTCTCAGTTGAGGGA
EST: gi|18372815|gb|BJ204417.1|BJ204417
EST:     CCTGCACTTACGCCTGCCTCATTCTTCACGACGATGGCATCGCCATCACG                         GCCGACAAGATCGCTGCTTTGGTTAAAGCCGCGAATGTCTCAGTTGAGGGA
genomic: CCTGCACTTACGCCTGCCTCATTCTTCACGACGATGGCATCGCCATCACGgtacgcacga ... aatgaattagGCCGACAAGATCGCTGCTTTGGTTAAAGCCGCGAATGTCTCAGTTGAGGGA
EST: gi|162236228|gb|FC411997.1|FC411997
EST:     CCTGCACTTACGCCTGCCTCATTCTTCACGACGATGGCATCGCCATCACG                         GCCGACAAGATCGCTGCTTTGGTTAAAGCCGCGAATGTCTCAGTTGAGGGA
genomic: CCTGCACTTACGCCTGCCTCATTCTTCACGACGATGGCATCGCCATCACGgtacgcacga ... aatgaattagGCCGACAAGATCGCTGCTTTGGTTAAAGCCGCGAATGTCTCAGTTGAGGGA
EST: gi|162238784|gb|FC417626.1|FC417626
EST:     CCTGCACTTACGCCTGCCTCATTTTTCACGACGATGGCATCGCCATCACG                         GCCGACAAGATCGCTGCTTTGGTTAAAGCCGCGAATGTCTCAGTTGAGGGA
genomic: CCTGCACTTACGCCTGCCTCATTCTTCACGACGATGGCATCGCCATCACGgtacgcacga ... aatgaattagGCCGACAAGATCGCTGCTTTGGTTAAAGCCGCGAATGTCTCAGTTGAGGGA
EST: gi|18333098|gb|BJ165112.1|BJ165112
EST:     CCTGCACTTACGCCTGCCTCATTCTTCACGACGATGGCATCGCCATCACG                         GCCGACAAGATCGCTGCTTTGGTTAAAGCCGCGAATGTCTCAGTTGAGGGA
genomic: CCTGCACTTACGCCTGCCTCATTCTTCACGACGATGGCATCGCCATCACGgtacgcacga ... aatgaattagGCCGACAAGATCGCTGCTTTGGTTAAAGCCGCGAATGTCTCAGTTGAGGGA
EST: gi|67703404|gb|BJ963637.1|BJ963637
EST:     CCTGCACTTACGCCTGCCTCATTCTTCACGACGATGGCATCGCCATCACG                         GCCGACAAGATCGCTGCTTTGGTTAAAGCCGCGAATGTCTCAGTTGAGGGA
genomic: CCTGCACTTACGCCTGCCTCATTCTTCACGACGATGGCATCGCCATCACGgtacgcacga ... aatgaattagGCCGACAAGATCGCTGCTTTGGTTAAAGCCGCGAATGTCTCAGTTGAGGGA
EST: gi|162217394|gb|FC392862.1|FC392862
EST:     CCTGCACTTACGCCTGCCTCATTCTTCACGACGATGGCATCGCCATCACG                         GCCGACAAGATCGCTGCTTTGGTTAAAGCCGCGAATGTCTCAGTTGAGGGA
genomic: CCTGCACTTACGCCTGCCTCATTCTTCACGACGATGGCATCGCCATCACGgtacgcacga ... aatgaattagGCCGACAAGATCGCTGCTTTGGTTAAAGCCGCGAATGTCTCAGTTGAGGGA
EST: gi|67507675|gb|BJ940555.1|BJ940555
EST:     CCTGCACTTACGCCTGCCTCATTCTTCACGACGATGGCATCGCCATCACG                         GCCGACAAGATCGCTGCTTTGGTTAAAGCCGCGAATGTCTCAGTTGAGGGA
genomic: CCTGCACTTACGCCTGCCTCATTCTTCACGACGATGGCATCGCCATCACGgtacgcacga ... aatgaattagGCCGACAAGATCGCTGCTTTGGTTAAAGCCGCGAATGTCTCAGTTGAGGGA
EST: gi|162236229|gb|FC411998.1|FC411998
EST:     CCTGCACTTACGCCTGCCTCATTCTTCACGACGATGGCATCGCCATCACG                         GCCGACAAGATCGCTGCTTTGGTTAAAGCCGCGAATGTCTCAGTTGAGGGA
genomic: CCTGCACTTACGCCTGCCTCATTCTTCACGACGATGGCATCGCCATCACGgtacgcacga ... aatgaattagGCCGACAAGATCGCTGCTTTGGTTAAAGCCGCGAATGTCTCAGTTGAGGGA
EST: gi|162204812|gb|FC381169.1|FC381169
EST:     CCTGCACTTACGCCTGCCTCATTCTTCACGACGATGGCATCGCCATCACG                         GCCGACAAGATCGCTGCTTTGGTTAAAGCCGCGAATGTCTCAGTTGAGGGA
genomic: CCTGCACTTACGCCTGCCTCATTCTTCACGACGATGGCATCGCCATCACGgtacgcacga ... aatgaattagGCCGACAAGATCGCTGCTTTGGTTAAAGCCGCGAATGTCTCAGTTGAGGGA
EST: gi|18350670|gb|BJ182721.1|BJ182721
EST:     CCTGCACTTACGCCTGCCTCATTCTTCACGANGATGGCATCGCCATCACG                         GNCGACAAGATCGCTGCTTTGGTTAAAGCCGCGAATGTCTCAGTTGAGGGA
genomic: CCTGCACTTACGCCTGCCTCATTCTTCACGACGATGGCATCGCCATCACGgtacgcacga ... aatgaattagGCCGACAAGATCGCTGCTTTGGTTAAAGCCGCGAATGTCTCAGTTGAGGGA
EST: gi|162208718|gb|FC384854.1|FC384854
EST:     CCTGCACTTACGCCTGCCTCATTCTTCACGACGATGGCATCGCCATCACG                         GCCGACAAGATCGCTGCTTTGGTTAAAGCCGCGAATGTCTCAGTTGAGGGA
genomic: CCTGCACTTACGCCTGCCTCATTCTTCACGACGATGGCATCGCCATCACGgtacgcacga ... aatgaattagGCCGACAAGATCGCTGCTTTGGTTAAAGCCGCGAATGTCTCAGTTGAGGGA
EST: gi|18335117|gb|BJ167135.1|BJ167135
EST:     CCTGCACTTACGCCTGCCTCATTCTTCACGACGATGGCATCGCCATCACG                         GCCGACAAGATCGCTGCTTTGGTTAAAGCCGCGAATGTCTCAGTTGAGGGA
genomic: CCTGCACTTACGCCTGCCTCATTCTTCACGACGATGGCATCGCCATCACGgtacgcacga ... aatgaattagGCCGACAAGATCGCTGCTTTGGTTAAAGCCGCGAATGTCTCAGTTGAGGGA
EST: gi|162227082|gb|FC403388.1|FC403388
EST:     CCTGCACTTACGCCTGCCTCATTCTTCACGACGATGGCATCGCCATCACG                         GCCGACAAGATCGCTGCTTTGGTTAAAGCCGCGAATGTCTCAGTTGAGGGA
genomic: CCTGCACTTACGCCTGCCTCATTCTTCACGACGATGGCATCGCCATCACGgtacgcacga ... aatgaattagGCCGACAAGATCGCTGCTTTGGTTAAAGCCGCGAATGTCTCAGTTGAGGGA
EST: gi|162224344|gb|FC400175.1|FC400175
EST:     CCTGCACTTACGCCTGCCTCATTCTTCACGACGATGGCATCGCCATCACG                         GCCGACAAGATCGCTGCTTTGGTTAAAGCCGCGAATGTCTCAGTTGAGGGA
genomic: CCTGCACTTACGCCTGCCTCATTCTTCACGACGATGGCATCGCCATCACGgtacgcacga ... aatgaattagGCCGACAAGATCGCTGCTTTGGTTAAAGCCGCGAATGTCTCAGTTGAGGGA
EST: gi|67692711|gb|BJ952944.1|BJ952944
EST:     CCTGCACTTACGCCTGCCTCATTCTTCACGACGATGGCATCGCCATCACG                         GCCGACAAGATCGCTGCTTTGGTTAAAGCCGCGAATGTCTCAGTTGAGGGA
genomic: CCTGCACTTACGCCTGCCTCATTCTTCACGACGATGGCATCGCCATCACGgtacgcacga ... aatgaattagGCCGACAAGATCGCTGCTTTGGTTAAAGCCGCGAATGTCTCAGTTGAGGGA
EST: gi|162238785|gb|FC417627.1|FC417627
EST:     CCTGCACTTACGCCTGCCTCATTCTTCACGACGATGGCATCGCCATCACG                         GCCGACAAGATCGCTGCTTTGGTTAAAGCCGCGAATGTCTCAGTTGAGGGA
genomic: CCTGCACTTACGCCTGCCTCATTCTTCACGACGATGGCATCGCCATCACGgtacgcacga ... aatgaattagGCCGACAAGATCGCTGCTTTGGTTAAAGCCGCGAATGTCTCAGTTGAGGGA
EST: gi|19781834|gb|BQ039779.1|BQ039779
EST:     CCTGCACTTACGCCTGCCTCATTCTTCACGACGATGGCATCGCCATCACG                         GCCGACAAGATCGCTGCTTTGGTTAAAGCCGCGAATGTCTCAGTTGAGGGA
genomic: CCTGCACTTACGCCTGCCTCATTCTTCACGACGATGGCATCGCCATCACGgtacgcacga ... aatgaattagGCCGACAAGATCGCTGCTTTGGTTAAAGCCGCGAATGTCTCAGTTGAGGGA
EST: gi|18331621|gb|BJ163632.1|BJ163632
EST:     CCTGCACTTACGCCTGCCTCATTCTTCACGACGATGGCATCGCCATCACG                         GCCGACAAGATCGCTGCTTTGGTTAAAGCCGCGAATGTCTCAGTTGAGGGA
genomic: CCTGCACTTACGCCTGCCTCATTCTTCACGACGATGGCATCGCCATCACGgtacgcacga ... aatgaattagGCCGACAAGATCGCTGCTTTGGTTAAAGCCGCGAATGTCTCAGTTGAGGGA
EST: gi|37828615|gb|BJ586627.1|BJ586627
EST:     CCTGCACTTACGCCTGCCTCATTCTTCACGACGATGGCATCGCCATCACG                         GCCGACAAGATCGCTGCTTTGGTTAAAGCCGCGAATGTCTCAGTTGAGGGA
genomic: CCTGCACTTACGCCTGCCTCATTCTTCACGACGATGGCATCGCCATCACGgtacgcacga ... aatgaattagGCCGACAAGATCGCTGCTTTGGTTAAAGCCGCGAATGTCTCAGTTGAGGGA
EST: gi|67704637|gb|BJ964870.1|BJ964870
EST:     CCTGCACTTACGCCTGCCTCATTCTTCACGACGATGGCATCGCCATCACG                         GCCGACAAGATCGCTGCTTTGGTTAAAGCCGCGAATGTCTCAGTTGAGGGA
genomic: CCTGCACTTACGCCTGCCTCATTCTTCACGACGATGGCATCGCCATCACGgtacgcacga ... aatgaattagGCCGACAAGATCGCTGCTTTGGTTAAAGCCGCGAATGTCTCAGTTGAGGGA
EST: gi|18325140|gb|BJ157136.1|BJ157136
EST:     CCTGCACTTACGCCTGCCTCATTCTTCACGACGATGGCATCGCCATCACG                         GCCGACAAGATCGCTGCTTTGGTTAAAGCCGCGAATGTCTCAGTTGAGGGA
genomic: CCTGCACTTACGCCTGCCTCATTCTTCACGACGATGGCATCGCCATCACGgtacgcacga ... aatgaattagGCCGACAAGATCGCTGCTTTGGTTAAAGCCGCGAATGTCTCAGTTGAGGGA

RNA-Seq data


 ATGC   Supported by RNA-Seq exonic block that spans over the splice site

 atgs   Truncated intron sequence

Each block is as long as the maximal overhang of any read spanning the junction.
The score is the number of alignments spanning the junction.


Found data for 1 RNA-Seqlibrary.


Block sizes: 35 (upstream exon), 26 (downstream exon)
Score: 12

TGCAGCGCTTGCGCTAAACCGCTTCGCCACCATGTCGATCAGTGAGGTCGCCTGCACTTACGCCTGCCTCATTCTTCACGACGATGGCATCGCCATCACGgtacgcacga ... aatgaattagGCCGACAAGATCGCTGCTTTGGTTAAAGCCGCGAATGTCTCAGTTGAGGGATACTGGCCTTCCCTGTTCGCCAAGCTTTGCGAGAAGAGGAGTGTCGAGG




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