1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
CGCCGAGTGGTACACCAGCATGGCGGATCTGTACCAGCGCAAGCTCTGGCACCAGCTCACGCAGAAGCTCGACCAGTTTGTGGCGCTCACCGTGTTCCAGgtttggcatgctctcacttttttgacgcaatcggcagtgtttttggtacatgggtggggttgattgcgagcgcatggtggttcgatgtggaggtgatgtg...
species | Physcomitrella patens |
transcript | PP1S131_74V6.1 |
intron # | 1 |
splice site | 5' |
intron type | U2 |
EST: ACCAGCTCACGCANAAGCTCGACCAGTTTGTGGCGCTCACCGTGTTCCAG GCGGGGGATACCCTTGTACAGCTATATCATAACTTTATTCGGGACTTTGAGEST: gi|100446893|gb|CJ971192.1|CJ971192
genomic: ACCAGCTCACGCAGAAGCTCGACCAGTTTGTGGCGCTCACCGTGTTCCAGgtttggcatg ... gcgattgcagGCGGGGGATACCCTTGTACAGCTATATCATAACTTTATTCGGGACTTTGAG
EST: ACCAGCTCACGCAGAAGCTCGACCAGTTTGTGGCGCTCACCGTGTTCCAG GCGGGGGATACCCTTGTACAGCTATATCATAACTTTATTCGGGACTTTGAGEST: gi|208375452|gb|DC936995.1|DC936995
genomic: ACCAGCTCACGCAGAAGCTCGACCAGTTTGTGGCGCTCACCGTGTTCCAGgtttggcatg ... gcgattgcagGCGGGGGATACCCTTGTACAGCTATATCATAACTTTATTCGGGACTTTGAG
EST: ACCAGCTCACGCAGAAGCTCGACCAGTTTGTGGCGCTCACCGTGTTCCAG GCGGGGGATACCCTTGTACAGCTATATCATAACTTTATTCGGGACTTTGAGEST: gi|162230349|gb|FC406913.1|FC406913
genomic: ACCAGCTCACGCAGAAGCTCGACCAGTTTGTGGCGCTCACCGTGTTCCAGgtttggcatg ... gcgattgcagGCGGGGGATACCCTTGTACAGCTATATCATAACTTTATTCGGGACTTTGAG
EST: ACCAGCTCACGCAGAAGCTCGACCAGTTTGTGGCGCTCACCGTGTTCCAG GCGGGGGATACCCTTGTACAGCTATATCATAACTTTATTCGGGACTTTGAGEST: gi|100422991|gb|BY958101.1|BY958101
genomic: ACCAGCTCACGCAGAAGCTCGACCAGTTTGTGGCGCTCACCGTGTTCCAGgtttggcatg ... gcgattgcagGCGGGGGATACCCTTGTACAGCTATATCATAACTTTATTCGGGACTTTGAG
EST: ACCAGCTCACGCAGAAGCTCGACCAGTTTGTGGCGCTCACCGTGTTCCAG GCGGGGGATACCCTTGTACAGCTATATCATAACTTTATTCGGGACTTTGAGEST: gi|100443633|gb|BY963730.1|BY963730
genomic: ACCAGCTCACGCAGAAGCTCGACCAGTTTGTGGCGCTCACCGTGTTCCAGgtttggcatg ... gcgattgcagGCGGGGGATACCCTTGTACAGCTATATCATAACTTTATTCGGGACTTTGAG
EST: ACCAGCTCACGCAGAAGCTCGACCAGTTTGTGGCGCTCACCGTGTTCCAG GCGGGGGATACCCTTGTACAGCTATATCATAACTTTATTCGGGACTTTGAGEST: gi|18344393|gb|BJ176433.1|BJ176433
genomic: ACCAGCTCACGCAGAAGCTCGACCAGTTTGTGGCGCTCACCGTGTTCCAGgtttggcatg ... gcgattgcagGCGGGGGATACCCTTGTACAGCTATATCATAACTTTATTCGGGACTTTGAG
EST: ACCAGCTCACGCAGAAGCTCGACCAGTTTGTGGCGCTCACCGTGTTCCAG GCGGGGGATACCCTTGTACAGCTATATCATAACTTTATTCGGGACTTTGAGEST: gi|208375641|gb|DC902858.1|DC902858
genomic: ACCAGCTCACGCAGAAGCTCGACCAGTTTGTGGCGCTCACCGTGTTCCAGgtttggcatg ... gcgattgcagGCGGGGGATACCCTTGTACAGCTATATCATAACTTTATTCGGGACTTTGAG
EST: ACCAGCTCACGCAGAAGCTCGACCAGTTTGTGGCGCTCACCGTGTTCCAG GCGGGGGATACCCTTGTACAGCTATATCATAACTTTATTCGGGACTTTGAGEST: gi|18344744|gb|BJ176785.1|BJ176785
genomic: ACCAGCTCACGCAGAAGCTCGACCAGTTTGTGGCGCTCACCGTGTTCCAGgtttggcatg ... gcgattgcagGCGGGGGATACCCTTGTACAGCTATATCATAACTTTATTCGGGACTTTGAG
EST: ACCAGCTCACGCAGAAGCTCGACCAGTTTGTGGCGCTCACCGTGTTCCAG GCGGGGGATACCCTTGTACAGCTATATCATAACTTTATTCGGGACTTTGAGEST: gi|162243864|gb|FC423181.1|FC423181
genomic: ACCAGCTCACGCAGAAGCTCGACCAGTTTGTGGCGCTCACCGTGTTCCAGgtttggcatg ... gcgattgcagGCGGGGGATACCCTTGTACAGCTATATCATAACTTTATTCGGGACTTTGAG
EST: ACCAGCTCACGCAGAAGCTCGACCAGTTTGTGGCGCTCACCGTGTTCCAG GCGGGGGATACCCTTGTACAGCTATATCATAACTTTATTCGGGACTTTGAGEST: gi|208358069|gb|DC943125.1|DC943125
genomic: ACCAGCTCACGCAGAAGCTCGACCAGTTTGTGGCGCTCACCGTGTTCCAGgtttggcatg ... gcgattgcagGCGGGGGATACCCTTGTACAGCTATATCATAACTTTATTCGGGACTTTGAG
EST: ACCAGCTCACGCAGAAGCTCGACCAGTTTGTGGCGCTCACCGTGTTCCAG GCGGGGGATACCCTTGTACAGCTATATCATAACTTTATTCGGGACTTTGAGEST: gi|100387295|gb|BY970439.1|BY970439
genomic: ACCAGCTCACGCAGAAGCTCGACCAGTTTGTGGCGCTCACCGTGTTCCAGgtttggcatg ... gcgattgcagGCGGGGGATACCCTTGTACAGCTATATCATAACTTTATTCGGGACTTTGAG
EST: ACCAGCTCACGCAGAAGCTCGACCAGTTTGTGGCGCTCACCGTGTTCCAG GCGGGGGATACCCTTGTACAGCTATATCATAACTTTATTCGGGACTTTGAGEST: gi|208399836|gb|DC904708.1|DC904708
genomic: ACCAGCTCACGCAGAAGCTCGACCAGTTTGTGGCGCTCACCGTGTTCCAGgtttggcatg ... gcgattgcagGCGGGGGATACCCTTGTACAGCTATATCATAACTTTATTCGGGACTTTGAG
EST: ACCAGCTCACGCAGAAGCTCGACCAGTTTGTGGCGCTCACCGTGTTCCAG GCGGGGGATACCCTTGTACAGCTATATCATAACTTTATTCGGGACTTTGAGEST: gi|208376633|gb|DC932097.1|DC932097
genomic: ACCAGCTCACGCAGAAGCTCGACCAGTTTGTGGCGCTCACCGTGTTCCAGgtttggcatg ... gcgattgcagGCGGGGGATACCCTTGTACAGCTATATCATAACTTTATTCGGGACTTTGAG
EST: ACCAGCTCACGCAGAAGCTCGACCAGTTTGTGGCGCTCACCGTGTTCCAG GCGGGGGATACCCTTGTACAGCTATATCATAACTTTATTCGGGACTTTGAG
genomic: ACCAGCTCACGCAGAAGCTCGACCAGTTTGTGGCGCTCACCGTGTTCCAGgtttggcatg ... gcgattgcagGCGGGGGATACCCTTGTACAGCTATATCATAACTTTATTCGGGACTTTGAG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| CGCCGAGTGGTACACCAGCATGGCGGATCTGTACCAGCGCAAGCTCTGGCACCAGCTCACGCAGAAGCTCGACCAGTTTGTGGCGCTCACCGTGTTCCAGgtttggcatgctctcacttttttgacgcaatcggcagtgtttttggtacatgggtggggttgattgcgagcgcatggtggttcgatgtggaggtgatgtg
- - - - - - - - - - - - - - - - - - - - - - - - - - CAGCTC
- - - - - - - - - - - - - - - - - - - - - - - - - - AGCTCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGC