1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' |
AATGGGCTTGAATTTGAATGGGACGAAGGTTTACACTGGCGCTGGTGGTGCAATACTTGAAGATGTGCCACACTTGACTGATTGGCTGTCTGGATTACCGgtgagaatttaggtgccgtgtaatgtgtattgtgaagtgtaatattagttcattttttttgttttattttgcttgatcagctgcttgttgtcccatgcgg...
species | Physcomitrella patens |
transcript | PP1S131_40V6.1 |
intron # | 1 |
splice site | 5' |
intron type | U2 |
EST: CAATACTTGAAGATGTGCCACACTTGACTGATTGGCTGTCTGGATTACCG ACCTACCCGAATCCATTGAAATACAACCCTGCATATTCAGCTGCGAGEST: gi|100386878|gb|BY988147.1|BY988147
genomic: CAATACTTGAAGATGTGCCACACTTGACTGATTGGCTGTCTGGATTACCGgtgagaattt ... atgattgcagACCTACCCGAATCCATTGAAATACAACCCTGCATATTCAGCTGCGAG
EST: CAATACTTGAAGATGTGCCACACTTGACTGATTGGCTGTCTGGATTACCG ACCTACCCGAATCCATTGAAATACAACCCTGCATATTCAGCTGCGAGEST: gi|67569895|gb|BJ942719.1|BJ942719
genomic: CAATACTTGAAGATGTGCCACACTTGACTGATTGGCTGTCTGGATTACCGgtgagaattt ... atgattgcagACCTACCCGAATCCATTGAAATACAACCCTGCATATTCAGCTGCGAG
EST: CAATACTTGAAGATGTGCCACACTTGACTGATTGGCTGTCTGGATTACCG ACCTACCCGAATCCATTGAAATACAACCCTGCATATTCAGCTGCGAGEST: gi|100367264|gb|BY984866.1|BY984866
genomic: CAATACTTGAAGATGTGCCACACTTGACTGATTGGCTGTCTGGATTACCGgtgagaattt ... atgattgcagACCTACCCGAATCCATTGAAATACAACCCTGCATATTCAGCTGCGAG
EST: CAATACTTGAAGATGTGCCACACTTGACTGATTGGCTGTCTGGATTACCG ACCTACCCGAATCCATTGAAATACAACCCTGCATATTCAGCTGCGAG
genomic: CAATACTTGAAGATGTGCCACACTTGACTGATTGGCTGTCTGGATTACCGgtgagaattt ... atgattgcagACCTACCCGAATCCATTGAAATACAACCCTGCATATTCAGCTGCGAG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| AATGGGCTTGAATTTGAATGGGACGAAGGTTTACACTGGCGCTGGTGGTGCAATACTTGAAGATGTGCCACACTTGACTGATTGGCTGTCTGGATTACCGgtgagaatttaggtgccgtgtaatgtgtattgtgaagtgtaatattagttcattttttttgttttattttgcttgatcagctgcttgttgtcccatgcgg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGATG