1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
TTCACTGTTGCGGGAGCCAAACGTTCGATTCATTGAGCGGATTTTGACGACGGAGGCCTCGAAGGAATCTGATCGGCCCTGCAGCTGGTTTCGCATTCAGgtctaatttggaatttgattttgatcgcctgcctcactcatctttgggtatcaatgcggtgattgattgataggttgattgattggtgctttgaagtggg...
species | Physcomitrella patens |
transcript | PP1S130_217V6.1 |
intron # | 1 |
splice site | 5' |
intron type | U2 |
EST: CTGATCGGCCCTGCAGCTGGTTTCGCATTCAG GTTTAGGGTTCGAATTAGGTTTTACAGTTTGGTTTCTGAGGATCTCGCTGCEST: gi|100359970|gb|BY965963.1|BY965963
genomic: CTGATCGGCCCTGCAGCTGGTTTCGCATTCAGgtctaatttg ... acaaatccagGTTTAGGGTTCGAATTAGGTTTTACAGTTTGGTTTCTGAGGATCTCGCTGC
EST: CGGAGGCCTCGAAGGAATCTGATCGGCCCTGCAGCTGGTTTCGCATTCAG GTTTAGGGTTCGAATTAGGTTTTACAGTTTGGTTTCTGAGGATCTCGCTGCEST: gi|67576219|gb|BJ949043.1|BJ949043
genomic: CGGAGGCCTCGAAGGAATCTGATCGGCCCTGCAGCTGGTTTCGCATTCAGgtctaatttg ... acaaatccagGTTTAGGGTTCGAATTAGGTTTTACAGTTTGGTTTCTGAGGATCTCGCTGC
EST: CGGAGGCCTCGAAGGANCCTNATCGGCCCTGCAGCTGGTTTCGCATTCAG GTTTAGGGTTCGAATTAGGTTTTACAGTTTGGTTTCTGAGGATCTCGCTGCEST: gi|162213862|gb|FC389853.1|FC389853
genomic: CGGAGGCCTCGAAGGAATCTGATCGGCCCTGCAGCTGGTTTCGCATTCAGgtctaatttg ... acaaatccagGTTTAGGGTTCGAATTAGGTTTTACAGTTTGGTTTCTGAGGATCTCGCTGC
EST: CGGAGGCCTCGAAGGAATCTGATCGGCCCTGCAGCTGGTTTCGCATTCAG GTTTAGGGTTCGAATTAGGTTTTACAGTTTGGTTTCTGAGGATCTCGCTGCEST: gi|162206028|gb|FC382813.1|FC382813
genomic: CGGAGGCCTCGAAGGAATCTGATCGGCCCTGCAGCTGGTTTCGCATTCAGgtctaatttg ... acaaatccagGTTTAGGGTTCGAATTAGGTTTTACAGTTTGGTTTCTGAGGATCTCGCTGC
EST: CGGAGGCCTCGAAGGAATCTGATCGGCCCTGCAGCTGGTTTCGCATTCAG GTTTAGGGTTCGAATTAGGTTTTACAGTTTGGTTTCTGAGGATCTCGCTGCEST: gi|18332387|gb|BJ164400.1|BJ164400
genomic: CGGAGGCCTCGAAGGAATCTGATCGGCCCTGCAGCTGGTTTCGCATTCAGgtctaatttg ... acaaatccagGTTTAGGGTTCGAATTAGGTTTTACAGTTTGGTTTCTGAGGATCTCGCTGC
EST: CGGAGGCCTCGAAGGAATCTGATCGGCCCTGCAGCTGGTTTCGCATTCAG GTTTAGGGTTCGAATTAGGTTTTACAGTTTGGTTTCTGAGGATCTCGCTGCEST: gi|18350731|gb|BJ182782.1|BJ182782
genomic: CGGAGGCCTCGAAGGAATCTGATCGGCCCTGCAGCTGGTTTCGCATTCAGgtctaatttg ... acaaatccagGTTTAGGGTTCGAATTAGGTTTTACAGTTTGGTTTCTGAGGATCTCGCTGC
EST: CGGAGGCCTCGAAGGAATCTGATCGGCCCTGCAGCTGGTTTCGCATTCAG GTTTAGGGTTCGAATTAGGTTTTACAGTTTGGTTTCTGAGGATCTCGCTGCEST: gi|162220663|gb|FC396875.1|FC396875
genomic: CGGAGGCCTCGAAGGAATCTGATCGGCCCTGCAGCTGGTTTCGCATTCAGgtctaatttg ... acaaatccagGTTTAGGGTTCGAATTAGGTTTTACAGTTTGGTTTCTGAGGATCTCGCTGC
EST: CGGAGGCCTCGAAGGAATCTGATCGGCCCTGCAGCTGGTTTCGCATTCAG GTTTAGGGTTCGAATTAGGTTTTACAGTTTGGTTTCTGAGGATCTCGCTGC
genomic: CGGAGGCCTCGAAGGAATCTGATCGGCCCTGCAGCTGGTTTCGCATTCAGgtctaatttg ... acaaatccagGTTTAGGGTTCGAATTAGGTTTTACAGTTTGGTTTCTGAGGATCTCGCTGC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TTCACTGTTGCGGGAGCCAAACGTTCGATTCATTGAGCGGATTTTGACGACGGAGGCCTCGAAGGAATCTGATCGGCCCTGCAGCTGGTTTCGCATTCAGgtctaatttggaatttgattttgatcgcctgcctcactcatctttgggtatcaatgcggtgattgattgataggttgattgattggtgctttgaagtggg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGCTG