Skip to another splice site:
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 5'  3'   		2  
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 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GCGCTCGTGCTTCGTCGCCATCGTTTTGCACCAAACGTTTGCTCTTGGAAGCCCAGCTTTGCCTTCCATCATGGCGACTCAGATGAGCAAGAAACGCAAGgtttgtggttctaatttcaggcacttcgaaatttcgagatacttgaggttgtgagggttttttagtattacgttttgttgcccgatccttttgaaagttttacagctctgccgtgtgtctggtctcggtcgcgcag

Basic information

species Physcomitrella patens
transcript PP1S127_74V6.1
intron # 1
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|18357986|gb|BJ190045.1|BJ190045
EST:     GCCCAGCTTTGCCTTCCATCATGGCGACTCAGATGAGCAAGAAACGCAAG                         TTTGTAGCAGACGGTGTGTTTTTTGCTGAGCTCAATGAGCTTCTCACCCGA
genomic: GCCCAGCTTTGCCTTCCATCATGGCGACTCAGATGAGCAAGAAACGCAAGgtttgtggtt ... ggtcgcgcagTTTGTAGCAGACGGTGTGTTTTTTGCTGAGCTCAATGAGCTTCTCACCCGA
EST: gi|162269608|gb|FC445567.1|FC445567
EST:     GCCCAGCTTTGCCTTCCATCATGGCGACTCAGATGAGCAAGAAACGCAAG                         TTTGTAGCAGACGGTGTGTTTTTTGCTGAGCTCAATGAGCTTCTCACCCGA
genomic: GCCCAGCTTTGCCTTCCATCATGGCGACTCAGATGAGCAAGAAACGCAAGgtttgtggtt ... ggtcgcgcagTTTGTAGCAGACGGTGTGTTTTTTGCTGAGCTCAATGAGCTTCTCACCCGA
EST: gi|208345907|gb|DC901792.1|DC901792
EST:     GCCCAGCTTTGCCTTCCATCATGGCGACTCAGATGAGCAAGAAACGCAAG                         TTTGTAGCAGACGGTGTGTTTTTTGCTGAGCTCAATGAGCTTCTCACCCGA
genomic: GCCCAGCTTTGCCTTCCATCATGGCGACTCAGATGAGCAAGAAACGCAAGgtttgtggtt ... ggtcgcgcagTTTGTAGCAGACGGTGTGTTTTTTGCTGAGCTCAATGAGCTTCTCACCCGA
EST: gi|208390380|gb|DC933425.1|DC933425
EST:     GCCCAGCTTTGCCTTCCATCATGGCGACTCAGATGAGCAAGAAACGCAAG                         TTTGTAGCAGACGGTGTGTTTTTTGCTGAGCTCAATGAGCTTCTCACCCGA
genomic: GCCCAGCTTTGCCTTCCATCATGGCGACTCAGATGAGCAAGAAACGCAAGgtttgtggtt ... ggtcgcgcagTTTGTAGCAGACGGTGTGTTTTTTGCTGAGCTCAATGAGCTTCTCACCCGA
EST: gi|18362800|gb|BJ194872.1|BJ194872
EST:     GCCCAGCTTTGCCTTCCATCATGGCGACTCAGATGAGCAAGAAACGCAAG                         TTTGTAGCAGACGGTGTGTTTTTTGCTGAGCTCAATGAGCTTCTCACCCGA
genomic: GCCCAGCTTTGCCTTCCATCATGGCGACTCAGATGAGCAAGAAACGCAAGgtttgtggtt ... ggtcgcgcagTTTGTAGCAGACGGTGTGTTTTTTGCTGAGCTCAATGAGCTTCTCACCCGA
EST: gi|67719364|gb|BJ969623.1|BJ969623
EST:     GCCCAGCTTTGCCTTCCATCATGGCGACTCAGATGAGCAAGAAACGCAAG                         TTTGTAGCAGACGGTGTGTTTTTTGCTGAGCTCAATGAGCTTCTCACCCGA
genomic: GCCCAGCTTTGCCTTCCATCATGGCGACTCAGATGAGCAAGAAACGCAAGgtttgtggtt ... ggtcgcgcagTTTGTAGCAGACGGTGTGTTTTTTGCTGAGCTCAATGAGCTTCTCACCCGA
EST: gi|67710084|gb|BJ965848.1|BJ965848
EST:     GCCCAGCTTTGCCTTCCATCATGGCGACTCAGATGAGCAAGAAACGCAAG                         TTTGTAGCAGACGGTGTGTTTTTTGCTGAGCTCAATGAGCTTCTCACCCGA
genomic: GCCCAGCTTTGCCTTCCATCATGGCGACTCAGATGAGCAAGAAACGCAAGgtttgtggtt ... ggtcgcgcagTTTGTAGCAGACGGTGTGTTTTTTGCTGAGCTCAATGAGCTTCTCACCCGA
EST: gi|162250491|gb|FC428394.1|FC428394
EST:     GCCCAGCTTTGCCTTCCATCATGGCGACTCAGATGAGCAAGAAACGCAAG                         TTTGTAGCAGACGGTGTGTTTTTTGCTGAGCTCAATGAGCTTCTCACCCGA
genomic: GCCCAGCTTTGCCTTCCATCATGGCGACTCAGATGAGCAAGAAACGCAAGgtttgtggtt ... ggtcgcgcagTTTGTAGCAGACGGTGTGTTTTTTGCTGAGCTCAATGAGCTTCTCACCCGA
EST: gi|208369055|gb|DC931301.1|DC931301
EST:     GCCCAGCTTTGCCTTCCATCATGGCGACTCAGATGAGCAAGAAACGCAAG                         TTTGTAGCAGACGGTGTGTTTTTTACTGAGCTCAATGAGCTTCTCACCCGA
genomic: GCCCAGCTTTGCCTTCCATCATGGCGACTCAGATGAGCAAGAAACGCAAGgtttgtggtt ... ggtcgcgcagTTTGTAGCAGACGGTGTGTTTTTTGCTGAGCTCAATGAGCTTCTCACCCGA
EST: gi|100396698|gb|BY953782.1|BY953782
EST:     GCCCAGCTTTGCCTTCCATCATGGCGACTCAGATGAGCAAGAAACGCAAG                         TTTGTAGCAGACGGTGTGTTTTTTGCTGAGCTCAATGAGCTTCTCACCCGA
genomic: GCCCAGCTTTGCCTTCCATCATGGCGACTCAGATGAGCAAGAAACGCAAGgtttgtggtt ... ggtcgcgcagTTTGTAGCAGACGGTGTGTTTTTTGCTGAGCTCAATGAGCTTCTCACCCGA
EST: gi|208389753|gb|DC938315.1|DC938315
EST:     GCCCAGCTTTGCCTTCCATCATGGCGACTCAGATGAGCAAGAAACGCAAG                         TTTGTAGCAGACGGTGTGTTTTTTGCTGAGCTCAATGAGCTTCTCACCCGA
genomic: GCCCAGCTTTGCCTTCCATCATGGCGACTCAGATGAGCAAGAAACGCAAGgtttgtggtt ... ggtcgcgcagTTTGTAGCAGACGGTGTGTTTTTTGCTGAGCTCAATGAGCTTCTCACCCGA
EST: gi|67720656|gb|BJ970915.1|BJ970915
EST:     GCCCAGCTTTGCCTTCCATCATGGCGACTCAGATGAGCAAGAAACGCAAG                         TTTGTAGCAGACGGTGTGTTTTTTGCTGAGCTCAATGAGCTTCTCACCCGA
genomic: GCCCAGCTTTGCCTTCCATCATGGCGACTCAGATGAGCAAGAAACGCAAGgtttgtggtt ... ggtcgcgcagTTTGTAGCAGACGGTGTGTTTTTTGCTGAGCTCAATGAGCTTCTCACCCGA
EST: gi|67702161|gb|BJ962394.1|BJ962394
EST:     GCCCAGCTTTGCCTTCCATCATGGCGACTCAGATGAGCAAGAAACGCAAG                         TTTGTAGCAGACGGTGTGTTTTTTGCTGAGCTCAATGAGCTTCTCACCCGA
genomic: GCCCAGCTTTGCCTTCCATCATGGCGACTCAGATGAGCAAGAAACGCAAGgtttgtggtt ... ggtcgcgcagTTTGTAGCAGACGGTGTGTTTTTTGCTGAGCTCAATGAGCTTCTCACCCGA
EST: gi|18375462|gb|BJ207040.1|BJ207040
EST:     GCCCAGCTTTGCCTTCCATCATGGCGACTCAGATGAGCAAGAAACGCAAG                         TTTGTAGCAGACGGTGTGTTTTTTGCTGAGCTCAATGAGCTTCTCACCCGA
genomic: GCCCAGCTTTGCCTTCCATCATGGCGACTCAGATGAGCAAGAAACGCAAGgtttgtggtt ... ggtcgcgcagTTTGTAGCAGACGGTGTGTTTTTTGCTGAGCTCAATGAGCTTCTCACCCGA
EST: gi|208359816|gb|DC938921.1|DC938921
EST:     GCCCAGCTTTGCCTTCCATCATGGCGACTCAGATGAGCAAGAAACGCAAG                         TTTGTAGCAGACGGTGTGTTTTTTGCTGAGCTCAATGAGCTTCTCACCCGA
genomic: GCCCAGCTTTGCCTTCCATCATGGCGACTCAGATGAGCAAGAAACGCAAGgtttgtggtt ... ggtcgcgcagTTTGTAGCAGACGGTGTGTTTTTTGCTGAGCTCAATGAGCTTCTCACCCGA
EST: gi|208360035|gb|DC934924.1|DC934924
EST:     GCCCAGCTTTGCCTTCCATCATGGCGACTCAGATGAGCAAGAAACGCAAG                         TTTGTAGCAGACGGTGTGTTTTTTGCTGAGCTCAATGAGCTTCTCACCCGA
genomic: GCCCAGCTTTGCCTTCCATCATGGCGACTCAGATGAGCAAGAAACGCAAGgtttgtggtt ... ggtcgcgcagTTTGTAGCAGACGGTGTGTTTTTTGCTGAGCTCAATGAGCTTCTCACCCGA
EST: gi|67716966|gb|BJ967225.1|BJ967225
EST:     GCCCAGCTTTGCCTTCCATCATGGCGACTCAGATGAGCAAGAAACGCAAG                         TTTGTAGCAGACGGTGTGTTTTTTGCTGAGCTCAATGAGCTTCTCACCCGA
genomic: GCCCAGCTTTGCCTTCCATCATGGCGACTCAGATGAGCAAGAAACGCAAGgtttgtggtt ... ggtcgcgcagTTTGTAGCAGACGGTGTGTTTTTTGCTGAGCTCAATGAGCTTCTCACCCGA
EST: gi|208354216|gb|DC902458.1|DC902458
EST:     GCCCAGCTTTGCCTTCCATCATGGCGACTCAGATGAGCAAGAAACGCAAG                         TTTGTAGCAGACGGTGTGTTTTTTGCTGAGCTCAATGAGCTTCTCACCCGA
genomic: GCCCAGCTTTGCCTTCCATCATGGCGACTCAGATGAGCAAGAAACGCAAGgtttgtggtt ... ggtcgcgcagTTTGTAGCAGACGGTGTGTTTTTTGCTGAGCTCAATGAGCTTCTCACCCGA
EST: gi|18343235|gb|BJ175273.1|BJ175273
EST:     GCCCAGCTTTGCCTTCCATCATGGCGACTCAGATGAGCAAGAAACGCAAG                         TTTGTAGCAGACGGTGTGTTTTTTGCTGAGCTCAATGAGCTTCTCACCCGA
genomic: GCCCAGCTTTGCCTTCCATCATGGCGACTCAGATGAGCAAGAAACGCAAGgtttgtggtt ... ggtcgcgcagTTTGTAGCAGACGGTGTGTTTTTTGCTGAGCTCAATGAGCTTCTCACCCGA
EST: gi|162250490|gb|FC428393.1|FC428393
EST:     CAGATGAGCAAGAAACGCAAG                         TTTGTAGCAGACGGTGTGTTTTTTGCTGAGCTCAATGAGCTTCTCACCCGA
genomic: CAGATGAGCAAGAAACGCAAGgtttgtggtt ... ggtcgcgcagTTTGTAGCAGACGGTGTGTTTTTTGCTGAGCTCAATGAGCTTCTCACCCGA
EST: gi|208393922|gb|DC938477.1|DC938477
EST:     GCCCAGCTTTGCCTTCCATCATGGCGACTCAGATGAGCAAGAAACGCAAG                         TTTGTAGCAGACGGTGTGTTTTTTGCTGAGCTCAATGAGCTTCTCACCCGA
genomic: GCCCAGCTTTGCCTTCCATCATGGCGACTCAGATGAGCAAGAAACGCAAGgtttgtggtt ... ggtcgcgcagTTTGTAGCAGACGGTGTGTTTTTTGCTGAGCTCAATGAGCTTCTCACCCGA
EST: gi|100413536|gb|BY956717.1|BY956717
EST:     GCCCAGCTTTGCCTTCCATCATGGCGACTCAGATGAGCAAGAAACGCAAG                         TTTGTAGCAGACGGTGTGTTTTTTGCTGAGCTCAATGAGCTTCTCACCCGA
genomic: GCCCAGCTTTGCCTTCCATCATGGCGACTCAGATGAGCAAGAAACGCAAGgtttgtggtt ... ggtcgcgcagTTTGTAGCAGACGGTGTGTTTTTTGCTGAGCTCAATGAGCTTCTCACCCGA
EST: gi|162269609|gb|FC445568.1|FC445568
EST:     GCCCAGCTTTGCCTTCCATCATGGCGACTCAGATGAGCAAGAAACGCAAG                         TTTGTAGCAGACGGTGTGTTTTTTGCTGAGCTCAATGAGCTTCTCACCCGA
genomic: GCCCAGCTTTGCCTTCCATCATGGCGACTCAGATGAGCAAGAAACGCAAGgtttgtggtt ... ggtcgcgcagTTTGTAGCAGACGGTGTGTTTTTTGCTGAGCTCAATGAGCTTCTCACCCGA
EST: gi|18327450|gb|BJ159453.1|BJ159453
EST:     GCCCAGCTTTGCCTTCCATCATGGCGACTCAGATGAGCAAGAAACGCAAG                         TTTGTAGCAGACGGTGTGTTTTTTGCTGAGCTCAATGAGCTTCTCACCCGA
genomic: GCCCAGCTTTGCCTTCCATCATGGCGACTCAGATGAGCAAGAAACGCAAGgtttgtggtt ... ggtcgcgcagTTTGTAGCAGACGGTGTGTTTTTTGCTGAGCTCAATGAGCTTCTCACCCGA
EST: gi|208365722|gb|DC935791.1|DC935791
EST:     GCCCAGCTTTGCCTTCCATCATGGCGACTCAGATGAGCAAGAAACGCAAG                         TTTGTAGCAGACGGTGTGTTTTTTGCTGAGCTCAATGAGCTTCTCACCCGA
genomic: GCCCAGCTTTGCCTTCCATCATGGCGACTCAGATGAGCAAGAAACGCAAGgtttgtggtt ... ggtcgcgcagTTTGTAGCAGACGGTGTGTTTTTTGCTGAGCTCAATGAGCTTCTCACCCGA
EST: gi|18326387|gb|BJ158386.1|BJ158386
EST:     GCCCAGCTTTGCCTTCCATCATGGCGACTCAGATGAGCAAGAAACGCAAG                         TTTGTAGCAGACGGTGTGTTTTTTGCTGAGCTCAATGAGCTTCTCACCCGA
genomic: GCCCAGCTTTGCCTTCCATCATGGCGACTCAGATGAGCAAGAAACGCAAGgtttgtggtt ... ggtcgcgcagTTTGTAGCAGACGGTGTGTTTTTTGCTGAGCTCAATGAGCTTCTCACCCGA
EST: gi|208357230|gb|DC942780.1|DC942780
EST:     GCCCAGCTTTGCCTTCCATCATGGCGACTCAGATGAGCAAGAAACGCAAG                         TTTGTAGCAGACGGTGTGTTTTTTGCTGAGCTCAATGAGCTTCTCACCCGA
genomic: GCCCAGCTTTGCCTTCCATCATGGCGACTCAGATGAGCAAGAAACGCAAGgtttgtggtt ... ggtcgcgcagTTTGTAGCAGACGGTGTGTTTTTTGCTGAGCTCAATGAGCTTCTCACCCGA
EST: gi|37850730|gb|BJ608738.1|BJ608738
EST:     GCCCAGCTTTGCNTTCCATCATGGCGACTCAGATGAGCAAGAAACGCAAG                         TTTGTAGCAGACGGTGTGTTTTTTGCTGAGCTCAATGAGCTTCTCACCCGA
genomic: GCCCAGCTTTGCCTTCCATCATGGCGACTCAGATGAGCAAGAAACGCAAGgtttgtggtt ... ggtcgcgcagTTTGTAGCAGACGGTGTGTTTTTTGCTGAGCTCAATGAGCTTCTCACCCGA
EST: gi|67727659|gb|BJ977918.1|BJ977918
EST:     GCCCAGCTTTGCCTTCCATCATGGCGACTCAGATGAGCAAGAAACGCAAG                         TTTGTAGCAGACGGTGTGTTTTTTGCTGAGCTCAATGAGCTTCTCACCCGA
genomic: GCCCAGCTTTGCCTTCCATCATGGCGACTCAGATGAGCAAGAAACGCAAGgtttgtggtt ... ggtcgcgcagTTTGTAGCAGACGGTGTGTTTTTTGCTGAGCTCAATGAGCTTCTCACCCGA
EST: gi|67718572|gb|BJ968831.1|BJ968831
EST:     GCCCAGCTTTGCCTTCCATCATGGCGACTCAGATGAGCAAGAAACGCAAG                         TTTGTAGCAGACGGTGTGTTTTTTGCTGAGCTCAATGAGCTTCTCACCCGA
genomic: GCCCAGCTTTGCCTTCCATCATGGCGACTCAGATGAGCAAGAAACGCAAGgtttgtggtt ... ggtcgcgcagTTTGTAGCAGACGGTGTGTTTTTTGCTGAGCTCAATGAGCTTCTCACCCGA
EST: gi|208393333|gb|DC904007.1|DC904007
EST:     GCCCAGCTTTGCCTTCCATCATGGCGACTCAGATGAGCAAGAAACGCAAG                         TTTGTAGCAGACGGTGTGTTTTTTGCTGAGCTCAATGAGCTTCTCACCCGA
genomic: GCCCAGCTTTGCCTTCCATCATGGCGACTCAGATGAGCAAGAAACGCAAGgtttgtggtt ... ggtcgcgcagTTTGTAGCAGACGGTGTGTTTTTTGCTGAGCTCAATGAGCTTCTCACCCGA
EST: gi|208351580|gb|DC905729.1|DC905729
EST:     GCCCAGCTTTGCCTTCCATCATGGCGACTCAGATGAGCAAGAAACGCAAG                         TTTGTAGCAGACGGTGTGTTTTTTGCTGAGCTCAATGAGCTTCTCACCCGA
genomic: GCCCAGCTTTGCCTTCCATCATGGCGACTCAGATGAGCAAGAAACGCAAGgtttgtggtt ... ggtcgcgcagTTTGTAGCAGACGGTGTGTTTTTTGCTGAGCTCAATGAGCTTCTCACCCGA
EST: gi|100385509|gb|BY969846.1|BY969846
EST:     GCCCAGCTTTGCCTTCCATCATGGCGACTCAGATGAGCAAGAAACGCAAG                         TTTGTAGCAGACGGTGTGTTTTTTGCTGAGCTCAATGAGCTTCTCACCCGA
genomic: GCCCAGCTTTGCCTTCCATCATGGCGACTCAGATGAGCAAGAAACGCAAGgtttgtggtt ... ggtcgcgcagTTTGTAGCAGACGGTGTGTTTTTTGCTGAGCTCAATGAGCTTCTCACCCGA
EST: gi|208379651|gb|DC903706.1|DC903706
EST:     GCCCAGCTTTGCCTTCCATCATGGCGACTCAGATGAGCAAGAAACGCAAG                         TTTGTAGCAGACGGTGTGTTTTTTGCTGAGCTCAATGAGCTTCTCACCCGA
genomic: GCCCAGCTTTGCCTTCCATCATGGCGACTCAGATGAGCAAGAAACGCAAGgtttgtggtt ... ggtcgcgcagTTTGTAGCAGACGGTGTGTTTTTTGCTGAGCTCAATGAGCTTCTCACCCGA
EST: gi|67718261|gb|BJ968520.1|BJ968520
EST:     GCCCAGCTTTGCCTTCCATCATGGCGACTCAGATGAGCAA-AAACGCAAG                         TTTGTAGCAGACGGTGTGTTTTTTGCTGAGCTCAATGAGCTTCTCACCCGA
genomic: GCCCAGCTTTGCCTTCCATCATGGCGACTCAGATGAGCAAGAAACGCAAGgtttgtggtt ... ggtcgcgcagTTTGTAGCAGACGGTGTGTTTTTTGCTGAGCTCAATGAGCTTCTCACCCGA
EST: gi|18344144|gb|BJ176183.1|BJ176183
EST:     GCCCAGCTTTGCCTTCCATCATGGCGACTCAGATGAGCAAGAAACGCAAG                         TTTGTAGCAGACGGTGTGTTTTTTGCTGAGCTCAATGAGCTTCTCACCCGA
genomic: GCCCAGCTTTGCCTTCCATCATGGCGACTCAGATGAGCAAGAAACGCAAGgtttgtggtt ... ggtcgcgcagTTTGTAGCAGACGGTGTGTTTTTTGCTGAGCTCAATGAGCTTCTCACCCGA
EST: gi|208364553|gb|DC930943.1|DC930943
EST:     GCCCAGCTTTGCCTTCCATCATGGCGACTCAGATGAGCAAGAAACGCAAG                         TTTGTAGCAGACGGTGTGTTTTTTGCTGAGCTCAATGAGCTTCTCACCCGA
genomic: GCCCAGCTTTGCCTTCCATCATGGCGACTCAGATGAGCAAGAAACGCAAGgtttgtggtt ... ggtcgcgcagTTTGTAGCAGACGGTGTGTTTTTTGCTGAGCTCAATGAGCTTCTCACCCGA
EST: gi|208366877|gb|DC951364.1|DC951364
EST:     CCCAGC-TTGNCNTTCCATCATGGNGANTCAGATGAGCAAGAAACGCAAG                         TTTGTAGCAGACGGTGTGTTTTTTGCTGAGCTCAATGAGCTTTTCNCCCCG
genomic: CCCAGCTTTG-CCTTCCATCATGGCGACTCAGATGAGCAAGAAACGCAAGgtttgtggtt ... ggtcgcgcagTTTGTAGCAGACGGTGTGTTTTTTGCTGAGCTCAATGAGCTTCTC-ACCCG
EST: gi|18369419|gb|BJ201506.1|BJ201506
EST:     GCCCAGCTTTGCCTTCCATCATGGCGACTCAGATGAGCAAGAAACGCAAG                         TTTGTAGCAGACGGTGTGTTTTTTGCTGAGCTCAATGAGCTTCTCACCCGA
genomic: GCCCAGCTTTGCCTTCCATCATGGCGACTCAGATGAGCAAGAAACGCAAGgtttgtggtt ... ggtcgcgcagTTTGTAGCAGACGGTGTGTTTTTTGCTGAGCTCAATGAGCTTCTCACCCGA
EST: gi|208374394|gb|DC940695.1|DC940695
EST:     GCCCAGCTTTGCCTTCCATCATGGCGACTCAGATGAGCAAGAAACGCAAG                         TTTGTAGCAGACGGTGTGTTTTTTGCTGAGCTCAATGAGCTTCTCACCCGA
genomic: GCCCAGCTTTGCCTTCCATCATGGCGACTCAGATGAGCAAGAAACGCAAGgtttgtggtt ... ggtcgcgcagTTTGTAGCAGACGGTGTGTTTTTTGCTGAGCTCAATGAGCTTCTCACCCGA
EST: gi|208392633|gb|DC933991.1|DC933991
EST:     GCCCAGCTTTGCCTTCCATCATGGCGACTCAGATGAGCAAGAAACGCAAG                         TTTGTAGCAGACGGTGTGTTTTTTGCTGAGCTCAATGAGCTTCTCACCCGA
genomic: GCCCAGCTTTGCCTTCCATCATGGCGACTCAGATGAGCAAGAAACGCAAGgtttgtggtt ... ggtcgcgcagTTTGTAGCAGACGGTGTGTTTTTTGCTGAGCTCAATGAGCTTCTCACCCGA
EST: gi|18356278|gb|BJ188337.1|BJ188337
EST:     GCCCAGCTTTGCCTTCCATCATGGCGACTCAGATGAGCAAGAAACGCAAG                         TTTGTAGCAGACGGTGTGTTTTTTGCTGAGCTCAATGAGCTTCTCACCCGA
genomic: GCCCAGCTTTGCCTTCCATCATGGCGACTCAGATGAGCAAGAAACGCAAGgtttgtggtt ... ggtcgcgcagTTTGTAGCAGACGGTGTGTTTTTTGCTGAGCTCAATGAGCTTCTCACCCGA
EST: gi|208368343|gb|DC935684.1|DC935684
EST:     GCCCAGCTTTGCCTTCCATCATGGCGACTCAGATGAGCAAGAAACGCAAG                         TTTGTAGCAGACGGTGTGTTTTTTGCTGAGCTCAATGAGCTTCTCACCCGA
genomic: GCCCAGCTTTGCCTTCCATCATGGCGACTCAGATGAGCAAGAAACGCAAGgtttgtggtt ... ggtcgcgcagTTTGTAGCAGACGGTGTGTTTTTTGCTGAGCTCAATGAGCTTCTCACCCGA
EST: gi|67727005|gb|BJ977264.1|BJ977264
EST:     GCCCAGCTTTGCCTTCCATCATGGCGACTCAGATGAGCAAGAAACGCAAG                         TTTGTAGCAGACGGTGTGTTTTTTGCTGAGCTCAATGAGCTTCTCACCCGA
genomic: GCCCAGCTTTGCCTTCCATCATGGCGACTCAGATGAGCAAGAAACGCAAGgtttgtggtt ... ggtcgcgcagTTTGTAGCAGACGGTGTGTTTTTTGCTGAGCTCAATGAGCTTCTCACCCGA
EST: gi|18357436|gb|BJ189495.1|BJ189495
EST:     GCCCAGCTTTGCCTTCCATCATGGCGACTCAGATGAGCAAGAAACGCAAG                         TTTGTAGCAGACGGTGTGTTTTTTGCTGAGCTCAATGAGCTTCTCACCCGA
genomic: GCCCAGCTTTGCCTTCCATCATGGCGACTCAGATGAGCAAGAAACGCAAGgtttgtggtt ... ggtcgcgcagTTTGTAGCAGACGGTGTGTTTTTTGCTGAGCTCAATGAGCTTCTCACCCGA

RNA-Seq data


 ATGC   Supported by RNA-Seq exonic block that spans over the splice site

 atgs   Truncated intron sequence

Each block is as long as the maximal overhang of any read spanning the junction.
The score is the number of alignments spanning the junction.


Found data for 1 RNA-Seqlibrary.


Block sizes: 31 (upstream exon), 32 (downstream exon)
Score: 26

GCGCTCGTGCTTCGTCGCCATCGTTTTGCACCAAACGTTTGCTCTTGGAAGCCCAGCTTTGCCTTCCATCATGGCGACTCAGATGAGCAAGAAACGCAAGgtttgtggtt ... ggtcgcgcagTTTGTAGCAGACGGTGTGTTTTTTGCTGAGCTCAATGAGCTTCTCACCCGAGAGCTTGCTGAGGACGGCTATTCCGGAGTGGAGGTGCGCGTCACGCCTA




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Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
GCGCTCGTGCTTCGTCGCCATCGTTTTGCACCAAACGTTTGCTCTTGGAAGCCCAGCTTTGCCTTCCATCATGGCGACTCAGATGAGCAAGAAACGCAAGgtttgtggttctaatttcaggcacttcgaaatttcgagatacttgaggttgtgagggttttttagtattacgttttgttgcccgatccttttgaaagttttacagctctgccgtgtgtctggtctcggtcgcgcag

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  CAGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  AGCAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAA