1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
CCTTTGCACGCACAGTCTAACTGGCGGTGTAGATCCGCTCAAAGAGTTTCGATCTAGCCCTCTGCTGAGAAGTTGTAGGATCTCGATTGTAGATGCATCGgtgagtatgaatggcgtggatttagatttgaattcgctgtcttgactgcattgtcaatcgtcgcaatttaagcgttgttgcagccacatttggaagtgtgaggtacctgctagtgttgtagaagtttgccgaatattgaaggaggcttgaattgttgcag
species | Physcomitrella patens |
transcript | PP1S123_79V6.1 |
intron # | 1 |
splice site | 5' |
intron type | U2 |
EST: GATCTAGCCCTCTGCTGAGAAGTTGTAGGATCTCGATTGTAGATGCATCG ACACGGGACCGGACATGGCGCCTTCTGAAGGATTAGATCCTGGCAGCGATAEST: gi|18352850|gb|BJ184905.1|BJ184905
genomic: GATCTAGCCCTCTGCTGAGAAGTTGTAGGATCTCGATTGTAGATGCATCGgtgagtatga ... attgttgcagACACGGGACCGGACATGGCGCCTTCTGAAGGATTAGATCCTGGCAGCGATA
EST: GATCTAGCCCTCTGCTGAGAAGTTGTAGGATCTCGATTGTAGATGCATCG ACACGGGACCGGACATGGCGCCTTCTGAAGGATTAGATCCTGGCAGCGATAEST: gi|18357345|gb|BJ189404.1|BJ189404
genomic: GATCTAGCCCTCTGCTGAGAAGTTGTAGGATCTCGATTGTAGATGCATCGgtgagtatga ... attgttgcagACACGGGACCGGACATGGCGCCTTCTGAAGGATTAGATCCTGGCAGCGATA
EST: GATCTAGCCCTCTGCTGAGAAGTTGTAGGATCTCGATTGTAGATGCATCG ACACGGGACCGGACATGGCGCCTTCTGAAGGATTAGATCCTGGCAGCGATA
genomic: GATCTAGCCCTCTGCTGAGAAGTTGTAGGATCTCGATTGTAGATGCATCGgtgagtatga ... attgttgcagACACGGGACCGGACATGGCGCCTTCTGAAGGATTAGATCCTGGCAGCGATA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| CCTTTGCACGCACAGTCTAACTGGCGGTGTAGATCCGCTCAAAGAGTTTCGATCTAGCCCTCTGCTGAGAAGTTGTAGGATCTCGATTGTAGATGCATCGgtgagtatgaatggcgtggatttagatttgaattcgctgtcttgactgcattgtcaatcgtcgcaatttaagcgttgttgcagccacatttggaagtgtgaggtacctgctagtgttgtagaagtttgccgaatattgaaggaggcttgaattgttgcag
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