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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TCATCTCGGAGGCGAATCGCTGGTGCACGCTTCGCCCGCCACAATGACTGCCCAGGAAGCTGAGGGACTCGCCACCGAGCTCGAGCAGCAGAAGCTTCACgtgagttgggggaggggattcggttttagggttttgtggtgttggtttgtggtcttggtgacgtgagcggtggtggtgcatgtgtggcttgtaggtgtag...

Basic information

species Physcomitrella patens
transcript PP1S122_100V6.1
intron # 1
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|208372205|gb|DC948008.1|DC948008
EST:     CCCAGGAAGCTGAGGGACTCGCCACCGAGCTCGAGCAGCAGAAGCTTCAC                         TCAGACGATCCCATCATTGAGGATGCGAAGGACAGTGATGACGAGGACGAT
genomic: CCCAGGAAGCTGAGGGACTCGCCACCGAGCTCGAGCAGCAGAAGCTTCACgtgagttggg ... acgtgattagTCAGACGATCCCATCATTGAGGATGCGAAGGACAGTGATGACGAGGACGAT
EST: gi|67571025|gb|BJ943849.1|BJ943849
EST:     CCCAGGAAGCTGAGGGACTCGCCACCGAGCTCGAGCAGCAGAAGCTTCAC                         TCAGACGATCCCATCATTGAGGATGCGAAGGACAGTGATGACGAGGACGAT
genomic: CCCAGGAAGCTGAGGGACTCGCCACCGAGCTCGAGCAGCAGAAGCTTCACgtgagttggg ... acgtgattagTCAGACGATCCCATCATTGAGGATGCGAAGGACAGTGATGACGAGGACGAT
EST: gi|162231154|gb|FC406460.1|FC406460
EST:     CCCAGGAAGCTGAGGGACTCGCCACCGAGCTCGAGCAGCAGAAGCTTCAC                         TCAGACGATCCCATCATTGAGGATGCGAAGGACAGTGATGACGAGGACGAT
genomic: CCCAGGAAGCTGAGGGACTCGCCACCGAGCTCGAGCAGCAGAAGCTTCACgtgagttggg ... acgtgattagTCAGACGATCCCATCATTGAGGATGCGAAGGACAGTGATGACGAGGACGAT
EST: gi|162178580|gb|FC355032.1|FC355032
EST:     CCCAGGAAGCTGAGGGACTCGCCACCGAGCTCGAGCAGCAGAAGCTTCAC                         TCAGACGATCCCATCATTGAGGATGCGAAGGACAGTGATGACGAGGACGAT
genomic: CCCAGGAAGCTGAGGGACTCGCCACCGAGCTCGAGCAGCAGAAGCTTCACgtgagttggg ... acgtgattagTCAGACGATCCCATCATTGAGGATGCGAAGGACAGTGATGACGAGGACGAT
EST: gi|162229186|gb|FC404545.1|FC404545
EST:     CCCAGGAAGCTGAGGGACTCGCCACCGAGCTCGAGCAGCAGAAGCTTCAC                         TCAGACGATCCCATCATTGAGGATGCGAAGGACAGTGATGACGAGGACGAT
genomic: CCCAGGAAGCTGAGGGACTCGCCACCGAGCTCGAGCAGCAGAAGCTTCACgtgagttggg ... acgtgattagTCAGACGATCCCATCATTGAGGATGCGAAGGACAGTGATGACGAGGACGAT
EST: gi|37835778|gb|BJ593790.1|BJ593790
EST:     CCCAGGAAGCTGAGGGACTCGCCACCGAGCTCGAGCAGCAGAAGCTTCAC                         TCAGACGATCCCATCATTGAGGATGCGAAGGACAGTGATGACGAGGACGAT
genomic: CCCAGGAAGCTGAGGGACTCGCCACCGAGCTCGAGCAGCAGAAGCTTCACgtgagttggg ... acgtgattagTCAGACGATCCCATCATTGAGGATGCGAAGGACAGTGATGACGAGGACGAT
EST: gi|67694331|gb|BJ954564.1|BJ954564
EST:     CCCAGGAAGCTGAGGGACTCGCCACCGAGCTCGAGCAGCAGAAGCTTCAC                         TCAGACGATCCCATCATTGAGGATGCGAAGGACAGTGATGACGAGGACGAT
genomic: CCCAGGAAGCTGAGGGACTCGCCACCGAGCTCGAGCAGCAGAAGCTTCACgtgagttggg ... acgtgattagTCAGACGATCCCATCATTGAGGATGCGAAGGACAGTGATGACGAGGACGAT
EST: gi|162166454|gb|FC342436.1|FC342436
EST:     CCCAGGAAGCTGAGGGACTCGCCACCGAGCTCGAGCAGCAGAAGCTTCAC                         TCAGACGATCCCATCATTGAGGATGCGAAGGACAGTGATGACGAGGACGAT
genomic: CCCAGGAAGCTGAGGGACTCGCCACCGAGCTCGAGCAGCAGAAGCTTCACgtgagttggg ... acgtgattagTCAGACGATCCCATCATTGAGGATGCGAAGGACAGTGATGACGAGGACGAT
EST: gi|19790120|gb|BQ041642.1|BQ041642
EST:     CCCAGGAAGCTGAGGGACTCGCCACCGAGCTCGAGCAGCAGAAGCTTCAC                         TCAGACGATCCCATCATTGAGGATGCGAAGGACAGTGATGACGAGGACGAT
genomic: CCCAGGAAGCTGAGGGACTCGCCACCGAGCTCGAGCAGCAGAAGCTTCACgtgagttggg ... acgtgattagTCAGACGATCCCATCATTGAGGATGCGAAGGACAGTGATGACGAGGACGAT
EST: gi|37851849|gb|BJ609857.1|BJ609857
EST:     CCCAGGAAGCTGAGGGACTCGCCACCGAGCTCGAGCAGCAGAAGCTTCAC                         TCAGACGATCCCATCATTGAGGATGCGAAGGACAGTGATGACGAGGACGAT
genomic: CCCAGGAAGCTGAGGGACTCGCCACCGAGCTCGAGCAGCAGAAGCTTCACgtgagttggg ... acgtgattagTCAGACGATCCCATCATTGAGGATGCGAAGGACAGTGATGACGAGGACGAT
EST: gi|162262162|gb|FC437398.1|FC437398
EST:     CCCAGGAAGCTGAGGGACTCGCCACCGAGCTCGAGCAGCAGAAGCTTCAC                         TCAGACGATCCCATCATTGAGGATGCGAAGGACAGTGATGACGAGGACGAT
genomic: CCCAGGAAGCTGAGGGACTCGCCACCGAGCTCGAGCAGCAGAAGCTTCACgtgagttggg ... acgtgattagTCAGACGATCCCATCATTGAGGATGCGAAGGACAGTGATGACGAGGACGAT
EST: gi|67573722|gb|BJ946546.1|BJ946546
EST:     CCCAGGAAGCTGAGGGACTCGCCACCGAGCTCGAGCAGCAGAAGCTTCAC                         TCAGACGATCCCATCATTGAGGATGCGAAGGACAGTGATGACGAGGACGAT
genomic: CCCAGGAAGCTGAGGGACTCGCCACCGAGCTCGAGCAGCAGAAGCTTCACgtgagttggg ... acgtgattagTCAGACGATCCCATCATTGAGGATGCGAAGGACAGTGATGACGAGGACGAT
EST: gi|162274723|gb|FC450490.1|FC450490
EST:     CCCAGGAAGCTGAGGGACTCGCCACCGAGCTCGAGCAGCAGAAGCTTCAC                         TCAGACGATCCCATCATTGAGGATGCGAAGGACAGTGATGACGAGGACGAT
genomic: CCCAGGAAGCTGAGGGACTCGCCACCGAGCTCGAGCAGCAGAAGCTTCACgtgagttggg ... acgtgattagTCAGACGATCCCATCATTGAGGATGCGAAGGACAGTGATGACGAGGACGAT
EST: gi|37826546|gb|BJ584558.1|BJ584558
EST:     CCCAGGAAGCTGAGGGACTCGCCACCGAGCTCGAGCAGCAGAAGCTTCAC                         TCAGACGATCCCATCATTGAGGATGCGAAGGACAGTGATGACGAGGACGAT
genomic: CCCAGGAAGCTGAGGGACTCGCCACCGAGCTCGAGCAGCAGAAGCTTCACgtgagttggg ... acgtgattagTCAGACGATCCCATCATTGAGGATGCGAAGGACAGTGATGACGAGGACGAT
EST: gi|37827511|gb|BJ585523.1|BJ585523
EST:     CCCAGGAAGCTGAGGGACTCGCCACCGAGCTCGAGCAGCAGAAGCTTCAC                         TCAGACGATCCCATCATTGAGGATGCGAAGGACAGTGATGACGAGGACGAT
genomic: CCCAGGAAGCTGAGGGACTCGCCACCGAGCTCGAGCAGCAGAAGCTTCACgtgagttggg ... acgtgattagTCAGACGATCCCATCATTGAGGATGCGAAGGACAGTGATGACGAGGACGAT
EST: gi|162259724|gb|FC436535.1|FC436535
EST:     CCCAGGAAGCTGAGGGACTCGCCACCGAGCTCGAGCAGCAGAAGCTTCAC                         TCAGACGATCCCATCATTGAGGATGCGAAGGACAGTGATGACGAGGACGAT
genomic: CCCAGGAAGCTGAGGGACTCGCCACCGAGCTCGAGCAGCAGAAGCTTCACgtgagttggg ... acgtgattagTCAGACGATCCCATCATTGAGGATGCGAAGGACAGTGATGACGAGGACGAT
EST: gi|162261048|gb|FC437442.1|FC437442
EST:     CCCAGGAAGCTGAGGGACTCGCCACCGAGCTCGAGCAGCAGAAGCTTCAC                         TCAGACGATCCCATCATTGAGGATGCGAAGGACAGTGATGACGAGGACGAT
genomic: CCCAGGAAGCTGAGGGACTCGCCACCGAGCTCGAGCAGCAGAAGCTTCACgtgagttggg ... acgtgattagTCAGACGATCCCATCATTGAGGATGCGAAGGACAGTGATGACGAGGACGAT
EST: gi|37843860|gb|BJ601868.1|BJ601868
EST:     CTCGAGCAGCAGAAGCTTCAC                         TCAGACGATCCCATCATTGAGGATGCGAAGGACAGTGATGACGAGGACGAT
genomic: CTCGAGCAGCAGAAGCTTCACgtgagttggg ... acgtgattagTCAGACGATCCCATCATTGAGGATGCGAAGGACAGTGATGACGAGGACGAT
EST: gi|162259002|gb|FC435945.1|FC435945
EST:     CCCAGGAAGCTGAGGGACTCGCCACCGAGCTCGAGCAGCAGAAGCTTCAC                         TCAGACGATCCCATCATTGAGGATGCGAAGGACAGTGATGACGAGGACGAT
genomic: CCCAGGAAGCTGAGGGACTCGCCACCGAGCTCGAGCAGCAGAAGCTTCACgtgagttggg ... acgtgattagTCAGACGATCCCATCATTGAGGATGCGAAGGACAGTGATGACGAGGACGAT
EST: gi|162240554|gb|FC416042.1|FC416042
EST:     CCCAGGAAGCTGAGGGACTCGCCACCGAGCTCGAGCAGCAGAAGCTTCAC                         TCAGACGATCCCATCATTGAGGATGCGAAGGACAGTGATGACGAGGACGAT
genomic: CCCAGGAAGCTGAGGGACTCGCCACCGAGCTCGAGCAGCAGAAGCTTCACgtgagttggg ... acgtgattagTCAGACGATCCCATCATTGAGGATGCGAAGGACAGTGATGACGAGGACGAT
EST: gi|18367132|gb|BJ199213.1|BJ199213
EST:     CCCAGGAAGCTGAGGGACTCGCCACCGAGCTCGAGCAGCAGAAGCTTCAC                         TCAGACGATCCCATCATTGAGGGTGCGAAGGACAGTGATGACGAGGACGAT
genomic: CCCAGGAAGCTGAGGGACTCGCCACCGAGCTCGAGCAGCAGAAGCTTCACgtgagttggg ... acgtgattagTCAGACGATCCCATCATTGAGGATGCGAAGGACAGTGATGACGAGGACGAT
EST: gi|162178579|gb|FC355031.1|FC355031
EST:     GAGCTCGAGCAGCAGAAGCTTCAC                         TCAGACGATCCCATCATTGAGGATGCGAAGGACAGTGATGACGAGGACGAT
genomic: GAGCTCGAGCAGCAGAAGCTTCACgtgagttggg ... acgtgattagTCAGACGATCCCATCATTGAGGATGCGAAGGACAGTGATGACGAGGACGAT
EST: gi|18348222|gb|BJ180269.1|BJ180269
EST:     CCCAGGAAGCTGAGGGACTCGCCACCGAGCTCGAGCAGCAGAAGCTTCAC                         TCAGACGATCCCATCATTGAGGATGCGAAGGACAGTGATGACGAGGACGAT
genomic: CCCAGGAAGCTGAGGGACTCGCCACCGAGCTCGAGCAGCAGAAGCTTCACgtgagttggg ... acgtgattagTCAGACGATCCCATCATTGAGGATGCGAAGGACAGTGATGACGAGGACGAT
EST: gi|208357849|gb|DC902345.1|DC902345
EST:     CCCAGGAAGCTGAGGGACTCGCCACCGAGCTCGAGCANCATAATATTCAC                         TCAGACGATCCCATCATTGAGGATGCGAAGGACAGTGATGACGAGGACGAT
genomic: CCCAGGAAGCTGAGGGACTCGCCACCGAGCTCGAGCAGCAGAAGCTTCACgtgagttggg ... acgtgattagTCAGACGATCCCATCATTGAGGATGCGAAGGACAGTGATGACGAGGACGAT
EST: gi|37847583|gb|BJ605591.1|BJ605591
EST:     CCCAGGAAGCTGAGGGACTCGCCACCGAGCTCGAGCAGCAGAAGCTTCAC                         TCAGACGATCCCATCATTGAGGGTGCGAAGGACAGTGATGACGAGGACGAT
genomic: CCCAGGAAGCTGAGGGACTCGCCACCGAGCTCGAGCAGCAGAAGCTTCACgtgagttggg ... acgtgattagTCAGACGATCCCATCATTGAGGATGCGAAGGACAGTGATGACGAGGACGAT
EST: gi|18352761|gb|BJ184816.1|BJ184816
EST:     CCCAGGAAGCTGAGGGACTCGCCACCGAGCTCGAGCAGCAGAAGCTTCAC                         TCAGACGATCCCATCATTGAGGATGCGAAGGACAGTGATGACGAGGACGAT
genomic: CCCAGGAAGCTGAGGGACTCGCCACCGAGCTCGAGCAGCAGAAGCTTCACgtgagttggg ... acgtgattagTCAGACGATCCCATCATTGAGGATGCGAAGGACAGTGATGACGAGGACGAT
EST: gi|162242129|gb|FC418410.1|FC418410
EST:     CCCAGGAAGCTGAGGGACTCGCCACCGAGCTCGAGCAGCAGAAGCTTCAC                         TCAGACGATCCCATCATTGAGGATGCGAAGGACAGTGATGACGAGGACGAT
genomic: CCCAGGAAGCTGAGGGACTCGCCACCGAGCTCGAGCAGCAGAAGCTTCACgtgagttggg ... acgtgattagTCAGACGATCCCATCATTGAGGATGCGAAGGACAGTGATGACGAGGACGAT
EST: gi|162259725|gb|FC436536.1|FC436536
EST:     CCCAGGAAGCTGAGGGACTCGCCACCGAGCTCGAGCAGCAGAAGCTTCAC                         TCAGACGATCCCATCATTGAGGATGCGAAGGACAGTGATGACGAGGACGAT
genomic: CCCAGGAAGCTGAGGGACTCGCCACCGAGCTCGAGCAGCAGAAGCTTCACgtgagttggg ... acgtgattagTCAGACGATCCCATCATTGAGGATGCGAAGGACAGTGATGACGAGGACGAT
EST: gi|18354308|gb|BJ186364.1|BJ186364
EST:     CCCAGGAAGCTGAGGGACTCGCCACCGAGCTCGAGCAGCAGAAGCTTCAC                         TCAGACGATCCCATCATTGAGGATGCGAAGGACAGTGATGACGAGGACGAT
genomic: CCCAGGAAGCTGAGGGACTCGCCACCGAGCTCGAGCAGCAGAAGCTTCACgtgagttggg ... acgtgattagTCAGACGATCCCATCATTGAGGATGCGAAGGACAGTGATGACGAGGACGAT
EST: gi|208398694|gb|DC916217.1|DC916217
EST:     CCCAGGAAGCTGAGGGACTCGCCACCGAGCTCGAGCAGCAGAAGCTTCAC                         TCAGACGATCCCATCATTGAGGATGCGAAGGACAGTGATGACGAGGACGAT
genomic: CCCAGGAAGCTGAGGGACTCGCCACCGAGCTCGAGCAGCAGAAGCTTCACgtgagttggg ... acgtgattagTCAGACGATCCCATCATTGAGGATGCGAAGGACAGTGATGACGAGGACGAT
EST: gi|37850592|gb|BJ608600.1|BJ608600
EST:     CCCAGGAAGCTGAGGGACTCGCCACCGAGCTCGAGCAGCAGAAGCTTCAC                         TCAGACGATCCCATCATTGAGGATGCGAAGGACAGTGATGACGAGGNCGAT
genomic: CCCAGGAAGCTGAGGGACTCGCCACCGAGCTCGAGCAGCAGAAGCTTCACgtgagttggg ... acgtgattagTCAGACGATCCCATCATTGAGGATGCGAAGGACAGTGATGACGAGGACGAT
EST: gi|208394200|gb|DC933868.1|DC933868
EST:     CCCAGGAAGCTGAGGGACTCGCCACCGAGCTCGANNNNCNTANTATTCAC                         TCAGACGATCCCATCATTGAGGATGCGAAGGACAGTGATGACGAGGACGAT
genomic: CCCAGGAAGCTGAGGGACTCGCCACCGAGCTCGAGCAGCAGAAGCTTCACgtgagttggg ... acgtgattagTCAGACGATCCCATCATTGAGGATGCGAAGGACAGTGATGACGAGGACGAT
EST: gi|37827604|gb|BJ585616.1|BJ585616
EST:     CCCAGGAAGCTGAGGGACTCGCCACCGAGCTCGAGCAGCAGAAGCTTCAC                         TCAGACGATCCCATCATTGAGGATGCGAAGGACAGTGATGACGAGGACGAT
genomic: CCCAGGAAGCTGAGGGACTCGCCACCGAGCTCGAGCAGCAGAAGCTTCACgtgagttggg ... acgtgattagTCAGACGATCCCATCATTGAGGATGCGAAGGACAGTGATGACGAGGACGAT
EST: gi|162225855|gb|FC402147.1|FC402147
EST:     CCCAGGAAGCTGAGGGACTCGCCACCGAGCTCGAGCAGCAGAAGCTTCAC                         TCAGACGATCCCATCATTGAGGATGCGAAGGACAGTGATGACGAGGACGAT
genomic: CCCAGGAAGCTGAGGGACTCGCCACCGAGCTCGAGCAGCAGAAGCTTCACgtgagttggg ... acgtgattagTCAGACGATCCCATCATTGAGGATGCGAAGGACAGTGATGACGAGGACGAT
EST: gi|162229187|gb|FC404546.1|FC404546
EST:     CCCAGGAAGCTGAGGGACTCGCCACCGAGCTCGAGCAGCAGAAGCTTCAC                         TCAGACGATCCCATCATTGAGGATGCGAAGGACAGTGATGACGAGGACGAT
genomic: CCCAGGAAGCTGAGGGACTCGCCACCGAGCTCGAGCAGCAGAAGCTTCACgtgagttggg ... acgtgattagTCAGACGATCCCATCATTGAGGATGCGAAGGACAGTGATGACGAGGACGAT
EST: gi|37822776|gb|BJ580842.1|BJ580842
EST:     CCACCGAGCTCGAGCAGCAGAAGCTTCAC                         TCAGACGATCCCATCATTGAGGATGCGAAGGACAGTGATGACGAGGACGAT
genomic: CCACCGAGCTCGAGCAGCAGAAGCTTCACgtgagttggg ... acgtgattagTCAGACGATCCCATCATTGAGGATGCGAAGGACAGTGATGACGAGGACGAT
EST: gi|37834191|gb|BJ592203.1|BJ592203
EST:     CCGAGCTCGAGCAGCAGAAGCTTCAC                         TCAGACGATCCCATCATTGAGGATGCGAAGGACAGTGATGACGAGGACGAT
genomic: CCGAGCTCGAGCAGCAGAAGCTTCACgtgagttggg ... acgtgattagTCAGACGATCCCATCATTGAGGATGCGAAGGACAGTGATGACGAGGACGAT
EST: gi|18333341|gb|BJ165355.1|BJ165355
EST:     GCTCGAGCAGCAGAAGCTTCAC                         TCAGACGATCCCATCATTGAGGATGCGAAGGACAGTGATGACGAGGACGAT
genomic: GCTCGAGCAGCAGAAGCTTCACgtgagttggg ... acgtgattagTCAGACGATCCCATCATTGAGGATGCGAAGGACAGTGATGACGAGGACGAT
EST: gi|162242128|gb|FC418409.1|FC418409
EST:     CCCAGGAAGCTGAGGGACTCGCCACCGAGCTCGAGCAGCAGAAGCTTCAC                         TCAGACGATCCCATCATTGAGGATGCGAAGGACAGTGATGACGAGGACGAT
genomic: CCCAGGAAGCTGAGGGACTCGCCACCGAGCTCGAGCAGCAGAAGCTTCACgtgagttggg ... acgtgattagTCAGACGATCCCATCATTGAGGATGCGAAGGACAGTGATGACGAGGACGAT
EST: gi|18373362|gb|BJ204940.1|BJ204940
EST:     CCCAGGAAGCTGAGGGACTCGCCACCGAGCTCGAGCAGCAGAAGCTTCAC                         TCAGACGATCCCATCATTGAGGATGCGAAGGACAGTGATGACGAGGACGAT
genomic: CCCAGGAAGCTGAGGGACTCGCCACCGAGCTCGAGCAGCAGAAGCTTCACgtgagttggg ... acgtgattagTCAGACGATCCCATCATTGAGGATGCGAAGGACAGTGATGACGAGGACGAT
EST: gi|18348311|gb|BJ180358.1|BJ180358
EST:     CCCAGGAAGCTGAGGGACTCGCCACCGAGCTCGAGCAGCAGAAGCTTCAC                         TCAGACGATCCCATCATTGAGGATGCGAAGGACAGTGATGACGAGGACGAT
genomic: CCCAGGAAGCTGAGGGACTCGCCACCGAGCTCGAGCAGCAGAAGCTTCACgtgagttggg ... acgtgattagTCAGACGATCCCATCATTGAGGATGCGAAGGACAGTGATGACGAGGACGAT
EST: gi|162275674|gb|FC451663.1|FC451663
EST:     CCCAGGAAGCTGAGGGACTCGCCACCGAGCTCGAGCAGCAGAAGCTTCAC                         TCAGACGATCCCATCATTGAGGATGCGAAGGACAGTGATGACGAGGACGAT
genomic: CCCAGGAAGCTGAGGGACTCGCCACCGAGCTCGAGCAGCAGAAGCTTCACgtgagttggg ... acgtgattagTCAGACGATCCCATCATTGAGGATGCGAAGGACAGTGATGACGAGGACGAT
EST: gi|18371666|gb|BJ203268.1|BJ203268
EST:     CCCAGGAAGCTGAGGGACTCGCCACCGAGCTCGAGCAGCAGAAGCTTCAC                         TCAGACGATCCCATCATTGAGGATGCGAAGGACAGTGATGACGAGGACGAT
genomic: CCCAGGAAGCTGAGGGACTCGCCACCGAGCTCGAGCAGCAGAAGCTTCACgtgagttggg ... acgtgattagTCAGACGATCCCATCATTGAGGATGCGAAGGACAGTGATGACGAGGACGAT
EST: gi|18347349|gb|BJ179395.1|BJ179395
EST:     CCCAGGAAGCTGAGGGACTCGCCACCGAGCTCGAGCAGCAGAAGCTTCAC                         TCAGACGATCCCATCATTGAGGATGCGAAGGACAGTGATGACGAGGACGAT
genomic: CCCAGGAAGCTGAGGGACTCGCCACCGAGCTCGAGCAGCAGAAGCTTCACgtgagttggg ... acgtgattagTCAGACGATCCCATCATTGAGGATGCGAAGGACAGTGATGACGAGGACGAT
EST: gi|18369328|gb|BJ201414.1|BJ201414
EST:     CCCAGGAAGCTGAGGGACTCGCCACCGAGCTCGAGCAGCAGAAGCTTCAC                         TCAGACGATCCCATCATTGAGGGTGCGAAGGACAGTGATGACGAGGACGAT
genomic: CCCAGGAAGCTGAGGGACTCGCCACCGAGCTCGAGCAGCAGAAGCTTCACgtgagttggg ... acgtgattagTCAGACGATCCCATCATTGAGGATGCGAAGGACAGTGATGACGAGGACGAT
EST: gi|162265208|gb|FC441295.1|FC441295
EST:     CCCAGGAAGCTGAGGGACTCGCCACCGAGCTCGAGCAGCAGAAGCTTCAC                         TCAGACGATCCCATCATTGAGGATGCGAAGGACAGTGATGACGAGGACGAT
genomic: CCCAGGAAGCTGAGGGACTCGCCACCGAGCTCGAGCAGCAGAAGCTTCACgtgagttggg ... acgtgattagTCAGACGATCCCATCATTGAGGATGCGAAGGACAGTGATGACGAGGACGAT
EST: gi|67697110|gb|BJ957343.1|BJ957343
EST:     CCCAGGAAGCTGAGGGACTCGCCACCGAGCTCGAGCAGCAGAAGCTTCAC                         TCAGACGATCCCATCATTGAGGATGCGAAGGACAGTGATGACGAGGACGAT
genomic: CCCAGGAAGCTGAGGGACTCGCCACCGAGCTCGAGCAGCAGAAGCTTCACgtgagttggg ... acgtgattagTCAGACGATCCCATCATTGAGGATGCGAAGGACAGTGATGACGAGGACGAT
EST: gi|37826398|gb|BJ584410.1|BJ584410
EST:     CCCAGGAAGCTGAGGGACTCGCCACCGAGCTCGAGCAGCAGAAGCTTCAC                         TCAGACGATCCCATCATTGAGGATGCGAAGGACAGTGATGACGAGGACGAT
genomic: CCCAGGAAGCTGAGGGACTCGCCACCGAGCTCGAGCAGCAGAAGCTTCACgtgagttggg ... acgtgattagTCAGACGATCCCATCATTGAGGATGCGAAGGACAGTGATGACGAGGACGAT
EST: gi|162166453|gb|FC342435.1|FC342435
EST:     CCCAGGAAGCTGAGGGACTCGCCACCGAGCTCGAGCAGCAGAAGCTTCAC                         TCAGACGATCCCATCATTGAGGATGCGAAGGACAGTGATGACGAGGACGAT
genomic: CCCAGGAAGCTGAGGGACTCGCCACCGAGCTCGAGCAGCAGAAGCTTCACgtgagttggg ... acgtgattagTCAGACGATCCCATCATTGAGGATGCGAAGGACAGTGATGACGAGGACGAT
EST: gi|162265656|gb|FC441619.1|FC441619
EST:     CCCAGGAAGCTGAGGGACTCGCCACCGAGCTCGAGCAGCAGAAGCTTCAC                         TCAGACGATCCCATCATTGAGGATGCGAAGGACAGTGATGACGAGGACGAT
genomic: CCCAGGAAGCTGAGGGACTCGCCACCGAGCTCGAGCAGCAGAAGCTTCACgtgagttggg ... acgtgattagTCAGACGATCCCATCATTGAGGATGCGAAGGACAGTGATGACGAGGACGAT

RNA-Seq data


 ATGC   Supported by RNA-Seq exonic block that spans over the splice site

 atgs   Truncated intron sequence

Each block is as long as the maximal overhang of any read spanning the junction.
The score is the number of alignments spanning the junction.


Found data for 1 RNA-Seqlibrary.


Block sizes: 34 (upstream exon), 35 (downstream exon)
Score: 96

TCATCTCGGAGGCGAATCGCTGGTGCACGCTTCGCCCGCCACAATGACTGCCCAGGAAGCTGAGGGACTCGCCACCGAGCTCGAGCAGCAGAAGCTTCACgtgagttggg ... acgtgattagTCAGACGATCCCATCATTGAGGATGCGAAGGACAGTGATGACGAGGACGATGATGAGGGCGACGATGACGACGTCGCTGATGGAGAGGAAG




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Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
TCATCTCGGAGGCGAATCGCTGGTGCACGCTTCGCCCGCCACAATGACTGCCCAGGAAGCTGAGGGACTCGCCACCGAGCTCGAGCAGCAGAAGCTTCACgtgagttgggggaggggattcggttttagggttttgtggtgttggtttgtggtcttggtgacgtgagcggtggtggtgcatgtgtggcttgtaggtgtag

- - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - -  AGCTGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  AGAAGC