1 5' 3' | 2 5' 3' | 3 5' 3' |
CGGTTTCGAAGGAAACACTGGTGTGATTGTCATTGCTGCCACCAACAGGGCTGATATTCTCGACGCTGCCTTGCTTCGTCCTGGAAGATTCGACAGACAGgtaatgtcatgaaaccatgatttaaatttgaacaatcttcaatcctcatggtgtatctaacttgcaagatgttagtttcttaatgtggagacgacgtggcacag
species | Physcomitrella patens |
transcript | PP1S118_166V6.1 |
intron # | 1 |
splice site | 5' |
intron type | U2 |
EST: CTGATATTCTCGACGCTGCCTTGCTTCGTCCTGGAAGATTCGACAGACAG GTTTCCGTGGATGTTCCGGACGTGAAGGGAAGGACTGACATCCTCAAGGTGEST: gi|162180630|gb|FC356987.1|FC356987
genomic: CTGATATTCTCGACGCTGCCTTGCTTCGTCCTGGAAGATTCGACAGACAGgtaatgtcat ... cgtggcacagGTTTCCGTGGATGTTCCGGACGTGAAGGGAAGGACTGACATCCTCAAGGTG
EST: CTGGAAGATTCGACAGACAG GTTTCCGTGGATGTTCCGGACGTGAAGGGAAGGACTGACATCCTCAAGGTGEST: gi|162156914|gb|FC333068.1|FC333068
genomic: CTGGAAGATTCGACAGACAGgtaatgtcat ... cgtggcacagGTTTCCGTGGATGTTCCGGACGTGAAGGGAAGGACTGACATCCTCAAGGTG
EST: CTGATATTCTCGACGCTGCCTTGCTTCGTCCTGGAAGATTCGACAGACAG GTTTCCGTGGATGTTCCGGACGTGAAGGGAAGGACTGACATCCTCAAGGTGEST: gi|162191704|gb|FC367437.1|FC367437
genomic: CTGATATTCTCGACGCTGCCTTGCTTCGTCCTGGAAGATTCGACAGACAGgtaatgtcat ... cgtggcacagGTTTCCGTGGATGTTCCGGACGTGAAGGGAAGGACTGACATCCTCAAGGTG
EST: CTGATATTCTCGACGCTGCCTTGCTTCGTCCTGGAAGATTCGACAGACAG GTTTCCGTGGATGTTCCGGACGTGAAGGGAAGGACTGACATCCTCAAGGTGEST: gi|162155882|gb|FC332431.1|FC332431
genomic: CTGATATTCTCGACGCTGCCTTGCTTCGTCCTGGAAGATTCGACAGACAGgtaatgtcat ... cgtggcacagGTTTCCGTGGATGTTCCGGACGTGAAGGGAAGGACTGACATCCTCAAGGTG
EST: CTGATATTCTCGACGCTGCCTTGCTTCGTCCTGGAAGATTCGACAGACAG GTTTCCGTGGATGEST: gi|162186129|gb|FC361333.1|FC361333
genomic: CTGATATTCTCGACGCTGCCTTGCTTCGTCCTGGAAGATTCGACAGACAGgtaatgtcat ... cgtggcacagGTTTCCGTGGATG
EST: CTGATATTCTCGACGCTGCCTTGCTTCGTCCTGGAAGATTCGACAGACAG GTTTCCGTGGATGTTCCGGACGTGAAGGGAAGGACTGACATCCTCAAGGTGEST: gi|162155563|gb|FC331007.1|FC331007
genomic: CTGATATTCTCGACGCTGCCTTGCTTCGTCCTGGAAGATTCGACAGACAGgtaatgtcat ... cgtggcacagGTTTCCGTGGATGTTCCGGACGTGAAGGGAAGGACTGACATCCTCAAGGTG
EST: CTGATATTCTCGACGCTGCCTTGCTTCGTCCTGGAAGATTCGACAGACAG GTTTCCGTGGATGTTCCGGACGTGAAGGGAAGGACTGACATCCTCAAGGTGEST: gi|162208920|gb|FC385264.1|FC385264
genomic: CTGATATTCTCGACGCTGCCTTGCTTCGTCCTGGAAGATTCGACAGACAGgtaatgtcat ... cgtggcacagGTTTCCGTGGATGTTCCGGACGTGAAGGGAAGGACTGACATCCTCAAGGTG
EST: CTGATATTCTCGACGCTGCCTTGCTTCGTCCTGGAAGATTCGACAGACAG GTTTCCGTGGATGTTCCGGACGTGAAGGGAAGGACTGACATCCTCAAGGTGEST: gi|162161676|gb|FC339091.1|FC339091
genomic: CTGATATTCTCGACGCTGCCTTGCTTCGTCCTGGAAGATTCGACAGACAGgtaatgtcat ... cgtggcacagGTTTCCGTGGATGTTCCGGACGTGAAGGGAAGGACTGACATCCTCAAGGTG
EST: CTGATATTCTCGACGCTGCCTTGCTTCGTCCTGGAAGATTCGACAGACAG GTTTCCGTGGATGTTCCGGACGTGAAGGGAAGGACTGACATCCTCAAGGTGEST: gi|162274886|gb|FC451121.1|FC451121
genomic: CTGATATTCTCGACGCTGCCTTGCTTCGTCCTGGAAGATTCGACAGACAGgtaatgtcat ... cgtggcacagGTTTCCGTGGATGTTCCGGACGTGAAGGGAAGGACTGACATCCTCAAGGTG
EST: CTGATATTCTCGACGCTGCCTTGCTTCGTCCTGGAAGATTCGACAGACAG GTTTCCGTGGATGTTCCGGACGTGAAGGGAAGGACTGACATCCTCAAGGTGEST: gi|162150526|gb|FC326174.1|FC326174
genomic: CTGATATTCTCGACGCTGCCTTGCTTCGTCCTGGAAGATTCGACAGACAGgtaatgtcat ... cgtggcacagGTTTCCGTGGATGTTCCGGACGTGAAGGGAAGGACTGACATCCTCAAGGTG
EST: CTGATATTCTCGACGCTGCCTTGCTTCGTCCTGGAAGATTCGACAGACAG GTTTCCGTGGATGEST: gi|162164619|gb|FC341914.1|FC341914
genomic: CTGATATTCTCGACGCTGCCTTGCTTCGTCCTGGAAGATTCGACAGACAGgtaatgtcat ... cgtggcacagGTTTCCGTGGATG
EST: CTGATATTCTCGACGCTGCCTTGCTTCGTCCTGGAAGATTCGACAGACAG GTTTCCGTGGATGTTCCGGACGTGAAGGGAAGGACTGACATCCTCAAGGTGEST: gi|162176373|gb|FC353558.1|FC353558
genomic: CTGATATTCTCGACGCTGCCTTGCTTCGTCCTGGAAGATTCGACAGACAGgtaatgtcat ... cgtggcacagGTTTCCGTGGATGTTCCGGACGTGAAGGGAAGGACTGACATCCTCAAGGTG
EST: CTGATATTCTCGACGCTGCCTTGCTTCGTCCTGGAAGATTCGACAGACAG GTTTCCGTGGATGTTCCGGACGTGAAGGGAAGGACTGACATCCTNCA-GGTEST: gi|162156983|gb|FC333345.1|FC333345
genomic: CTGATATTCTCGACGCTGCCTTGCTTCGTCCTGGAAGATTCGACAGACAGgtaatgtcat ... cgtggcacagGTTTCCGTGGATGTTCCGGACGTGAAGGGAAGGACTGACATCCT-CAAGGT
EST: CTGATATTCTCGACGCTGCCTTGCTTCGTCCTGGAAGATTCGACAGACAG GTTTCCGTGGATGTTCCGGACGTGAAGGGAAGGACTGACATCCTCAAGGTGEST: gi|162159446|gb|FC336235.1|FC336235
genomic: CTGATATTCTCGACGCTGCCTTGCTTCGTCCTGGAAGATTCGACAGACAGgtaatgtcat ... cgtggcacagGTTTCCGTGGATGTTCCGGACGTGAAGGGAAGGACTGACATCCTCAAGGTG
EST: CTGATATTCTCGACGCTGCCTTGCTTCGTCCTGGAAGATTCGACAGACAG GTTTCCGTGGATGTTCCGGACGTGAAGGGAAGGACTGACATCCTCAAGGTGEST: gi|162150725|gb|FC327621.1|FC327621
genomic: CTGATATTCTCGACGCTGCCTTGCTTCGTCCTGGAAGATTCGACAGACAGgtaatgtcat ... cgtggcacagGTTTCCGTGGATGTTCCGGACGTGAAGGGAAGGACTGACATCCTCAAGGTG
EST: CTGATATTCTCGACGCTGCCTTGCTTCGTCCTGGAAGATTCGACAGACAG GTTTCCGTGGATGTTCCCGACGTGAAGGGAAGGACTGACATCCTCAAGGTGEST: gi|162184673|gb|FC361911.1|FC361911
genomic: CTGATATTCTCGACGCTGCCTTGCTTCGTCCTGGAAGATTCGACAGACAGgtaatgtcat ... cgtggcacagGTTTCCGTGGATGTTCCGGACGTGAAGGGAAGGACTGACATCCTCAAGGTG
EST: CTGATATTCTCGACGCTGCCTTGCTTCGTCCTGGAAGATTCGACAGACAG GTTTCCGTGGATGTTCCGGACGTGAAGGGAAGGACTGACATCCTCAAGGTGEST: gi|162167471|gb|FC344188.1|FC344188
genomic: CTGATATTCTCGACGCTGCCTTGCTTCGTCCTGGAAGATTCGACAGACAGgtaatgtcat ... cgtggcacagGTTTCCGTGGATGTTCCGGACGTGAAGGGAAGGACTGACATCCTCAAGGTG
EST: CTGATATTCTCGACGCTGCCTTGCTTCGTCCTGGAAGATTCGACAGACAG GTTTCCGTGGATGTTCCGGACGTGEST: gi|162211065|gb|FC387089.1|FC387089
genomic: CTGATATTCTCGACGCTGCCTTGCTTCGTCCTGGAAGATTCGACAGACAGgtaatgtcat ... cgtggcacagGTTTCCGTGGATGTTCCGGACGTG
EST: CTGATATTCTCGACGCTGCCTTGCTTCGTCCTGGAAGATTCGACAGACAG GTTTCCGTGGATGTTCCGGACGTGAAGGGAAGGACTGACATCCTCAAGGTGEST: gi|162154402|gb|FC330209.1|FC330209
genomic: CTGATATTCTCGACGCTGCCTTGCTTCGTCCTGGAAGATTCGACAGACAGgtaatgtcat ... cgtggcacagGTTTCCGTGGATGTTCCGGACGTGAAGGGAAGGACTGACATCCTCAAGGTG
EST: ATATTCTCGACGCTGCCTTGCTTCGTCCTGGAAGATTCGACAGACAG GTTTCCGTGGATGTTCCGGACGTGAAGGGAAGGACTGACATCCTCAAGGTGEST: gi|162150060|gb|FC326591.1|FC326591
genomic: ATATTCTCGACGCTGCCTTGCTTCGTCCTGGAAGATTCGACAGACAGgtaatgtcat ... cgtggcacagGTTTCCGTGGATGTTCCGGACGTGAAGGGAAGGACTGACATCCTCAAGGTG
EST: CTGATATTCTCGACGCTGCCTTGCTTCGTCCTGGAAGATTCGACAGACAG GTTTCCGTGGATGTTCCGGACGTGAAGGGAAGGACTGACATCCTCAAGGTGEST: gi|162190967|gb|FC368373.1|FC368373
genomic: CTGATATTCTCGACGCTGCCTTGCTTCGTCCTGGAAGATTCGACAGACAGgtaatgtcat ... cgtggcacagGTTTCCGTGGATGTTCCGGACGTGAAGGGAAGGACTGACATCCTCAAGGTG
EST: CTGATATTCTCGACGCTGCCTTGCTTCGTCCTGGAAGATTCGACAGACAG GTTTCCGTGGATGTTCCGGACGTGAAGGGAAGGACTGACATCCTCAAGGTGEST: gi|162152471|gb|FC328034.1|FC328034
genomic: CTGATATTCTCGACGCTGCCTTGCTTCGTCCTGGAAGATTCGACAGACAGgtaatgtcat ... cgtggcacagGTTTCCGTGGATGTTCCGGACGTGAAGGGAAGGACTGACATCCTCAAGGTG
EST: CTGATATTCTCGACGCTGCCTTGCTTCGTCCTGAAAGATTCGACAGACAG GTTTCCGTGGATGTTCCGGACGTGAAGGGAAGGACTGACATCCTCAAGGTGEST: gi|100390222|gb|BY952630.1|BY952630
genomic: CTGATATTCTCGACGCTGCCTTGCTTCGTCCTGGAAGATTCGACAGACAGgtaatgtcat ... cgtggcacagGTTTCCGTGGATGTTCCGGACGTGAAGGGAAGGACTGACATCCTCAAGGTG
EST: CTGATATTCTCGACGCTGCCTTGCTTCGTCCTGGAAGATTCGACAGACAG GTTTCCGTGGATGTTCCGGACGTGAAGGGAAGGACTGACATCCTCAAGGTGEST: gi|162175126|gb|FC351987.1|FC351987
genomic: CTGATATTCTCGACGCTGCCTTGCTTCGTCCTGGAAGATTCGACAGACAGgtaatgtcat ... cgtggcacagGTTTCCGTGGATGTTCCGGACGTGAAGGGAAGGACTGACATCCTCAAGGTG
EST: CTGATATTCTCGACGCTGCCTTGCTTCGTCCTGGAAGATTCGACAGACAG GTTTCCGTGGATGTTCCGGACGTGAAGGGAAGGACTGACATCCTCAAGGTGEST: gi|162169713|gb|FC345250.1|FC345250
genomic: CTGATATTCTCGACGCTGCCTTGCTTCGTCCTGGAAGATTCGACAGACAGgtaatgtcat ... cgtggcacagGTTTCCGTGGATGTTCCGGACGTGAAGGGAAGGACTGACATCCTCAAGGTG
EST: CTGATATTCTCGACGCTGCCTTGCTTCGTCCTGGAAGATTCGACAGACAG GTTTCCGTGGATGTTCCGGACGTGAAGGGAAGGACTGACATCCTCAAGGTGEST: gi|162158337|gb|FC334756.1|FC334756
genomic: CTGATATTCTCGACGCTGCCTTGCTTCGTCCTGGAAGATTCGACAGACAGgtaatgtcat ... cgtggcacagGTTTCCGTGGATGTTCCGGACGTGAAGGGAAGGACTGACATCCTCAAGGTG
EST: CTGATATTCTCGACGCTGCCTTGCTTCGTCCTGGAAGATTCGACAGACAG GTTTCCGTGGATGTTCCGGACGTGAAGGGAAGGACTGACATCCTCEST: gi|162166434|gb|FC342416.1|FC342416
genomic: CTGATATTCTCGACGCTGCCTTGCTTCGTCCTGGAAGATTCGACAGACAGgtaatgtcat ... cgtggcacagGTTTCCGTGGATGTTCCGGACGTGAAGGGAAGGACTGACATCCTC
EST: CTGATATTCTCGACGCTGCCTTGCTTCGTCCTGGGAGATTCGACAGACAG GTTTCCGTGGATGTTCCGGACGTGAAGGGGAGGACTGACATCCTCAAGGTGEST: gi|162164523|gb|FC341610.1|FC341610
genomic: CTGATATTCTCGACGCTGCCTTGCTTCGTCCTGGAAGATTCGACAGACAGgtaatgtcat ... cgtggcacagGTTTCCGTGGATGTTCCGGACGTGAAGGGAAGGACTGACATCCTCAAGGTG
EST: CTGATATTCTCGACGCTGCCTTGCTTCGTCCTGGAAGATTCGACAGACAG GTTTCCGTGGATGTTCCGGACGTGAAGGGAAGGACTGACATCCTCAAGGTG
genomic: CTGATATTCTCGACGCTGCCTTGCTTCGTCCTGGAAGATTCGACAGACAGgtaatgtcat ... cgtggcacagGTTTCCGTGGATGTTCCGGACGTGAAGGGAAGGACTGACATCCTCAAGGTG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| CGGTTTCGAAGGAAACACTGGTGTGATTGTCATTGCTGCCACCAACAGGGCTGATATTCTCGACGCTGCCTTGCTTCGTCCTGGAAGATTCGACAGACAGgtaatgtcatgaaaccatgatttaaatttgaacaatcttcaatcctcatggtgtatctaacttgcaagatgttagtttcttaatgtggagacgacgtggcacag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAAGA