Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ATGGTTGGCGCGGGTTCTTTCTCCAGCACTTTTGGTGGCAGCCATGGTGTTGGTCGTGTATATTACAAAGGTCGACAAGGCGACTACTACGTCATGgtgagtcacctattgaattgttgtagtccaagtagacctttagttttcatgtagtcgtcttcttttcaaacttgtctcatgatttatttattaatttatgtatgtatttatttattttaatccgatttcgactttgttcacatgctgtag

Basic information

species Physcomitrella patens
transcript PP1S117_214V6.1
intron # 1
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: PP1S117_214V6.1 (Physcomitrella patens), 5'ss of exon 1
lower sequence: Vv04s0008g00160.t01 (Vitis vinifera), 5'ss of exon 4
ATGGTTGGCGCGGGTTCTTTCTCCAGCACTTTTGGTGGCAGCCATGGTGTTGGTCGTGTATATTACAAAGGTCGACAAGGCGACTACTACGTCATGgtgagtcacctattgaattgttgtagtccaagtagacctttagt--tttcatgtagtcgtcttcttttcaaactt-gtctcatgatttatttattaatttatgtatgtatttatttattttaatccgatttcgactttgttcacatgctgtag
                            |  |||||||||||||||||||    || ||| ||||||| || |||||||| |||||||| ||||||||  ||  || | |   || | ||  |     |     | ||    | | || |||   | ||||||    | || |  | | |||  |      ||  | |  ||| ||  |                                        
--------------------------TGCACTTGGTGGCAGCCATGGTGTGCCACGGGTACATTACAAGGGCCGACAAGGTGACTACTATGTCATGgtatgt-gccaagtattttat-gtgttttttatgattttataacagtgtgatctagc--ttttctttatggatttagaatgacgatgga---gaaaacctttcaatgcatacag---------------------------------------