Skip to another splice site:
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 5'  3'   		2  
 5'  3'   		3  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CTCGCCTAGACCACTCCCACGCTCCTCTGCCGCGCCAACCATGGCTGTCGCGCAACCTGAAGTCAAGCTTTTCGGGCGCTGGTCGTTCGACGACATCGAGgttcgtttttttcccaccacttcagcctgtcttcacgttctctgcctaactgttttgtggaacgcggggtttagggtttttcggtggcaaggttttgagg...

Basic information

species Physcomitrella patens
transcript PP1S114_146V6.1
intron # 1
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|67698006|gb|BJ958239.1|BJ958239
EST:     CGCAACCTGAAGTCAAGCTTTTCGGGCGCTGGTCGTTCGACGACATCGAG                         ATTAACGATATCTCTCTGGCGGATTACATTGCCGTGTCGGTGGACAAGCAT
genomic: CGCAACCTGAAGTCAAGCTTTTCGGGCGCTGGTCGTTCGACGACATCGAGgttcgttttt ... gggtgtgcagATTAACGATATCTCTCTGGCGGATTACATTGCCGTGTCGGTGGACAAGCAT
EST: gi|67703370|gb|BJ963603.1|BJ963603
EST:     CGCAACCTGAAGTCAAGCTTTTCGGGCGCTGGTCGTTCGACGACATCGAG                         ATTAACGATATCTCTCTGGCGGATTACATTGCCGTGTCGGTGGACAAGCAT
genomic: CGCAACCTGAAGTCAAGCTTTTCGGGCGCTGGTCGTTCGACGACATCGAGgttcgttttt ... gggtgtgcagATTAACGATATCTCTCTGGCGGATTACATTGCCGTGTCGGTGGACAAGCAT
EST: gi|162221762|gb|FC397094.1|FC397094
EST:     CGCAACCTGAAGTCAAGCTTTTCGGGCGCTGGTCGTTCGACGACATCGAG                         ATTAACGATATCTCTCTGGCGGATTACATTGCCGTGTCGGTGGACAAGCAT
genomic: CGCAACCTGAAGTCAAGCTTTTCGGGCGCTGGTCGTTCGACGACATCGAGgttcgttttt ... gggtgtgcagATTAACGATATCTCTCTGGCGGATTACATTGCCGTGTCGGTGGACAAGCAT
EST: gi|67704077|gb|BJ964310.1|BJ964310
EST:     CGCAACCTGAAGTCAAGCTTTTCGGGCGCTGGTCGTTCGACGACATCGAG                         ATTAACGATATCTCTCTGGCGGATTACATTGCCGTGTCGGTGGACAAGCAT
genomic: CGCAACCTGAAGTCAAGCTTTTCGGGCGCTGGTCGTTCGACGACATCGAGgttcgttttt ... gggtgtgcagATTAACGATATCTCTCTGGCGGATTACATTGCCGTGTCGGTGGACAAGCAT
EST: gi|162156145|gb|FC332520.1|FC332520
EST:     CGCAACCTGAAGTCAAGCTTTTCGGGCGCTGGTCGTTCGACGACATCGAG                         ATTAACGATATCTCTCTGGCGGATTACATTGCCGTGTCGGTGGACAAGCAT
genomic: CGCAACCTGAAGTCAAGCTTTTCGGGCGCTGGTCGTTCGACGACATCGAGgttcgttttt ... gggtgtgcagATTAACGATATCTCTCTGGCGGATTACATTGCCGTGTCGGTGGACAAGCAT
EST: gi|208353030|gb|DC910123.1|DC910123
EST:     CGCAACCTGAAGTCAAGCTTTTCGGGCGCTGGTCGTTCGACGACATCGAG                         ATTAACGATATCTCTCTGGCGGATTACATTGCCGTGTCGGTGGACAAGCAT
genomic: CGCAACCTGAAGTCAAGCTTTTCGGGCGCTGGTCGTTCGACGACATCGAGgttcgttttt ... gggtgtgcagATTAACGATATCTCTCTGGCGGATTACATTGCCGTGTCGGTGGACAAGCAT
EST: gi|162214167|gb|FC390213.1|FC390213
EST:     CGCAACCTGAAGTCAAGCTTTTCGGGCGCTGGTCGTTCGACGACATCGAG                         ATTAACGATATCTCTCTGGCGGATTACATTGCCGTGTCGGTGGACAAGCAT
genomic: CGCAACCTGAAGTCAAGCTTTTCGGGCGCTGGTCGTTCGACGACATCGAGgttcgttttt ... gggtgtgcagATTAACGATATCTCTCTGGCGGATTACATTGCCGTGTCGGTGGACAAGCAT
EST: gi|162268602|gb|FC443656.1|FC443656
EST:     CGCAACCTGAAGTCAAGCTTTTCGGGCGCTGGTCGTTCGACGACATCGAG                         ATTAACGATATCTCTCTGGCGGATTACATTGCCGTGTCGGTGGACAAGCAT
genomic: CGCAACCTGAAGTCAAGCTTTTCGGGCGCTGGTCGTTCGACGACATCGAGgttcgttttt ... gggtgtgcagATTAACGATATCTCTCTGGCGGATTACATTGCCGTGTCGGTGGACAAGCAT
EST: gi|67702029|gb|BJ962262.1|BJ962262
EST:     CGCAACCTGAAGTCAAGCTTTTCGGGCGCTGGTCGTTCGACGACATCGAG                         ATTAACGATATCTCTCTGGCGGATTACATTGCCGTGTCGGTGGACAAGCAT
genomic: CGCAACCTGAAGTCAAGCTTTTCGGGCGCTGGTCGTTCGACGACATCGAGgttcgttttt ... gggtgtgcagATTAACGATATCTCTCTGGCGGATTACATTGCCGTGTCGGTGGACAAGCAT
EST: gi|67704507|gb|BJ964740.1|BJ964740
EST:     CGCAACCTGAAGTCAAGCTTTTCGGGCGCTGGTCGTTCGACGACATCGAG                         ATTAACGATATCTCTCTGGCGGATTACATTGCCGTGTCGGTGGACAAGCAT
genomic: CGCAACCTGAAGTCAAGCTTTTCGGGCGCTGGTCGTTCGACGACATCGAGgttcgttttt ... gggtgtgcagATTAACGATATCTCTCTGGCGGATTACATTGCCGTGTCGGTGGACAAGCAT
EST: gi|18366578|gb|BJ198657.1|BJ198657
EST:     CGCAACCTGAAGTCAAGCTTTTCGGGCGCTGGTCGTTCGACGACATCGAG                         ATTAACGATATCTCTCTGGCGGATTACATTGCCGTGTCGGTGGACAAGCA
genomic: CGCAACCTGAAGTCAAGCTTTTCGGGCGCTGGTCGTTCGACGACATCGAGgttcgttttt ... gggtgtgcagATTAACGATATCTCTCTGGCGGATTACATTGCCGTGTCGGTGGACAAGCA
EST: gi|67725017|gb|BJ975276.1|BJ975276
EST:     CGCAACCTGAAGTCAAGCTTTTCGGGCGCTGGTCGTTCGACGACATCGAG                         ATTAACGATATCTCTCTGGCGGATTACATTGCCGTGTCGGTGGACAAGCAT
genomic: CGCAACCTGAAGTCAAGCTTTTCGGGCGCTGGTCGTTCGACGACATCGAGgttcgttttt ... gggtgtgcagATTAACGATATCTCTCTGGCGGATTACATTGCCGTGTCGGTGGACAAGCAT
EST: gi|67710283|gb|BJ965946.1|BJ965946
EST:     CGCAACCTGAAGTCAAGCTTTTCGGGCGCTGGTCGTTCGACGACATCGAG                         ATTAACGATATCTCTCTGGCGGATTACATTGCCGTGTCGGTGGACAAGCAT
genomic: CGCAACCTGAAGTCAAGCTTTTCGGGCGCTGGTCGTTCGACGACATCGAGgttcgttttt ... gggtgtgcagATTAACGATATCTCTCTGGCGGATTACATTGCCGTGTCGGTGGACAAGCAT
EST: gi|18365767|gb|BJ197844.1|BJ197844
EST:     CGCAACCTGAAGTCAAGCTTTTCGGGCGCTGGTCGTTCGACGACATCGAG                         ATTAACGATATCTCTCTGGCGGATTACATTGCCGTGTCGGTGGACAAGCAT
genomic: CGCAACCTGAAGTCAAGCTTTTCGGGCGCTGGTCGTTCGACGACATCGAGgttcgttttt ... gggtgtgcagATTAACGATATCTCTCTGGCGGATTACATTGCCGTGTCGGTGGACAAGCAT
EST: gi|67724208|gb|BJ974467.1|BJ974467
EST:     CGCAACCTGAAGTCAAGCTTTTCGGGCGCTGGTCGTTCGACGACATCGAG                         ATTAACGATATCTCTCTGGCGGATTACATTGCCGTGTCGGTGGACAAGCAT
genomic: CGCAACCTGAAGTCAAGCTTTTCGGGCGCTGGTCGTTCGACGACATCGAGgttcgttttt ... gggtgtgcagATTAACGATATCTCTCTGGCGGATTACATTGCCGTGTCGGTGGACAAGCAT
EST: gi|18329586|gb|BJ161592.1|BJ161592
EST:     CGCAACCTGAAGTCAAGCTTTTCGGGCGCTGGTCGTTCGACGACATCGAG                         ATTAACGATATCTCTCTGGCGGATTACATTGCCGTGTCGGTGGACAAGCAT
genomic: CGCAACCTGAAGTCAAGCTTTTCGGGCGCTGGTCGTTCGACGACATCGAGgttcgttttt ... gggtgtgcagATTAACGATATCTCTCTGGCGGATTACATTGCCGTGTCGGTGGACAAGCAT
EST: gi|67726813|gb|BJ977072.1|BJ977072
EST:     CGCAACCTGAAGTCAAGCTTTTCGGGCGCTGGTCGTTCGACGACATCGAG                         ATTAACGATATCTCTCTGGCGGATTACATTGCCGTGTCGGTGGACAAGCAT
genomic: CGCAACCTGAAGTCAAGCTTTTCGGGCGCTGGTCGTTCGACGACATCGAGgttcgttttt ... gggtgtgcagATTAACGATATCTCTCTGGCGGATTACATTGCCGTGTCGGTGGACAAGCAT
EST: gi|162214166|gb|FC390212.1|FC390212
EST:     CGCAACCTGAAGTCAAGCTTTTCGGGCGCTGGTCGTTCGACGACATCGAG                         ATTAACGATATCTCTCTGGCGGATTACATTGCCGTGTCGGTGGACAAGCAT
genomic: CGCAACCTGAAGTCAAGCTTTTCGGGCGCTGGTCGTTCGACGACATCGAGgttcgttttt ... gggtgtgcagATTAACGATATCTCTCTGGCGGATTACATTGCCGTGTCGGTGGACAAGCAT
EST: gi|18364886|gb|BJ196959.1|BJ196959
EST:     CGCAACCTGAAGTCAAGCTTTTCGGGCGCTGGTCGTTCGACGACATCGAG                         ATTAACGATATCTCTCTGGCGGATTACATTGCCGTGTCGGTGGACAAGCAT
genomic: CGCAACCTGAAGTCAAGCTTTTCGGGCGCTGGTCGTTCGACGACATCGAGgttcgttttt ... gggtgtgcagATTAACGATATCTCTCTGGCGGATTACATTGCCGTGTCGGTGGACAAGCAT
EST: gi|67703196|gb|BJ963429.1|BJ963429
EST:     CGCAACCTGAAGTCAAGCTTTTCGGGCGCTGGTCGTTCGACGACATCGAG                         ATTAACGATATCTCTCTGGCGGATTACATTGCCGTGTCGGTGGACAAGCAT
genomic: CGCAACCTGAAGTCAAGCTTTTCGGGCGCTGGTCGTTCGACGACATCGAGgttcgttttt ... gggtgtgcagATTAACGATATCTCTCTGGCGGATTACATTGCCGTGTCGGTGGACAAGCAT
EST: gi|208396170|gb|DC923964.1|DC923964
EST:     CGCAACCTGAAGTCAAGCTTTTCGGGCGCTGGTCGTTCGACGACATCGAG                         ATTAACGATATCTCTCTGGCGGATTACATTGCCGTGTCGGTGGACAAGCAT
genomic: CGCAACCTGAAGTCAAGCTTTTCGGGCGCTGGTCGTTCGACGACATCGAGgttcgttttt ... gggtgtgcagATTAACGATATCTCTCTGGCGGATTACATTGCCGTGTCGGTGGACAAGCAT
EST: gi|162259284|gb|FC436188.1|FC436188
EST:     CGCAACCTGAAGTCAAGCTTTTCGGGCGCTGGTCGTTCGACGACATCGAG                         ATTAACGATATCTCTCTGGCGGATTACATTGCCGTGTCGGTGGACAAGCAT
genomic: CGCAACCTGAAGTCAAGCTTTTCGGGCGCTGGTCGTTCGACGACATCGAGgttcgttttt ... gggtgtgcagATTAACGATATCTCTCTGGCGGATTACATTGCCGTGTCGGTGGACAAGCAT
EST: gi|18347061|gb|BJ179107.1|BJ179107
EST:     CGCAACCTGAAGTCAAGCTTTTCGGGCGCTGGTCGTTCGACGACATCGAG                         ATTAACGATATCTCTCTGGCGGATTACATTGCCGTGTCGGTGGACAAGCAT
genomic: CGCAACCTGAAGTCAAGCTTTTCGGGCGCTGGTCGTTCGACGACATCGAGgttcgttttt ... gggtgtgcagATTAACGATATCTCTCTGGCGGATTACATTGCCGTGTCGGTGGACAAGCAT
EST: gi|67726078|gb|BJ976337.1|BJ976337
EST:     CGCAACCTGAAGTCAAGCTTTTCGGGCGCTGGTCGTTCGACGACATCGAG                         ATTAACGATATCTCTCTGGCGGATTACATTGCCGTGTCGGTGGACAAGCAT
genomic: CGCAACCTGAAGTCAAGCTTTTCGGGCGCTGGTCGTTCGACGACATCGAGgttcgttttt ... gggtgtgcagATTAACGATATCTCTCTGGCGGATTACATTGCCGTGTCGGTGGACAAGCAT
EST: gi|67702086|gb|BJ962319.1|BJ962319
EST:     CGCAACCTGAAGTCAAGCTTTTCGGGCGCTGGTCGTTCGACGACATCGAG                         ATTAACGATATCTCTCTGGCGGATTACATTGCCGTGTCGGTGGACAAGCAT
genomic: CGCAACCTGAAGTCAAGCTTTTCGGGCGCTGGTCGTTCGACGACATCGAGgttcgttttt ... gggtgtgcagATTAACGATATCTCTCTGGCGGATTACATTGCCGTGTCGGTGGACAAGCAT
EST: gi|67716606|gb|BJ966866.1|BJ966866
EST:     CGCAACCTGAAGTCAAGCTTTTCGGGCGCTGGTCGTTCGACGACATCGAG                         ATTAACGATATCTCTCTGGCGGATTACATTGCCGTGTCGGTGGACAAGCAT
genomic: CGCAACCTGAAGTCAAGCTTTTCGGGCGCTGGTCGTTCGACGACATCGAGgttcgttttt ... gggtgtgcagATTAACGATATCTCTCTGGCGGATTACATTGCCGTGTCGGTGGACAAGCAT
EST: gi|67717563|gb|BJ967822.1|BJ967822
EST:     CGCAACCTGAAGTCAAGCTTTTCGGGCGCTGGTCGTTCGACGACATCGAG                         ATTAACGATATCTCTCTGGCGGATTACATTGCCGTGTCGGTGGACAAGCAT
genomic: CGCAACCTGAAGTCAAGCTTTTCGGGCGCTGGTCGTTCGACGACATCGAGgttcgttttt ... gggtgtgcagATTAACGATATCTCTCTGGCGGATTACATTGCCGTGTCGGTGGACAAGCAT
EST: gi|22491782|gb|BU051705.1|BU051705
EST:     CGCAACCTGAAGTCAAGCTTTTCGGGCGCTGGTCGTTCGACGACATCGAG                         ATTAACGATATCTCTCTGGCGGATTACATTGCCGTGTCGGTGGACAAGCAT
genomic: CGCAACCTGAAGTCAAGCTTTTCGGGCGCTGGTCGTTCGACGACATCGAGgttcgttttt ... gggtgtgcagATTAACGATATCTCTCTGGCGGATTACATTGCCGTGTCGGTGGACAAGCAT
EST: gi|67725126|gb|BJ975385.1|BJ975385
EST:     CGCAACCTGAAGTCAAGCTTTTCGGGCGCTGGTCGTTCGACGACATCGAG                         ATTAACGATATCTCTCTGGCGGATTACATTGCCGTGTCGGTGGACAAGCAT
genomic: CGCAACCTGAAGTCAAGCTTTTCGGGCGCTGGTCGTTCGACGACATCGAGgttcgttttt ... gggtgtgcagATTAACGATATCTCTCTGGCGGATTACATTGCCGTGTCGGTGGACAAGCAT
EST: gi|67716500|gb|BJ966760.1|BJ966760
EST:     CGCAACCTGAAGTCAAGCTTTTCGGGCGCTGGTCGTTCGACGACATCGAG                         ATTAACGATATCTCTCTGGCGGATTACATTGCCGTGTCGGTGGACAAGCAT
genomic: CGCAACCTGAAGTCAAGCTTTTCGGGCGCTGGTCGTTCGACGACATCGAGgttcgttttt ... gggtgtgcagATTAACGATATCTCTCTGGCGGATTACATTGCCGTGTCGGTGGACAAGCAT
EST: gi|18373479|gb|BJ205057.1|BJ205057
EST:     CGCAACCTGAAGTCAAGCTTTTCGGGCGCTGGTCGTTCGACGACATCGAG                         ATTAACGATATCTCTCTGGCGGATTACATTGCCGTGTCGGTGGACAAGCAT
genomic: CGCAACCTGAAGTCAAGCTTTTCGGGCGCTGGTCGTTCGACGACATCGAGgttcgttttt ... gggtgtgcagATTAACGATATCTCTCTGGCGGATTACATTGCCGTGTCGGTGGACAAGCAT
EST: gi|67704313|gb|BJ964546.1|BJ964546
EST:     CGCAACCTGAAGTCAAGCTTTTCGGGCGCTGGTCGTTCGACGACATCGAG                         ATTAACGATATCTCTCTGGCGGATTACATTGCCGTGTCGGTGGACAAGCAT
genomic: CGCAACCTGAAGTCAAGCTTTTCGGGCGCTGGTCGTTCGACGACATCGAGgttcgttttt ... gggtgtgcagATTAACGATATCTCTCTGGCGGATTACATTGCCGTGTCGGTGGACAAGCAT
EST: gi|18340238|gb|BJ172266.1|BJ172266
EST:     CGCAACCTGAAGTCAAGCTTTTCGGGCGCTGGTCGTTCGACGACATCGAG                         ATTAACGATATCTCTCTGGCGGATTACATTGCCGTGTCGGTGGACAAGCAT
genomic: CGCAACCTGAAGTCAAGCTTTTCGGGCGCTGGTCGTTCGACGACATCGAGgttcgttttt ... gggtgtgcagATTAACGATATCTCTCTGGCGGATTACATTGCCGTGTCGGTGGACAAGCAT
EST: gi|22491772|gb|BU051695.1|BU051695
EST:     GGTCGTTCGACGACATCGAG                         ATTAACGATATCTCTCTGGCGGATTACATTGCCGTGTCGGTGGACAAGCAT
genomic: GGTCGTTCGACGACATCGAGgttcgttttt ... gggtgtgcagATTAACGATATCTCTCTGGCGGATTACATTGCCGTGTCGGTGGACAAGCAT
EST: gi|18360906|gb|BJ192970.1|BJ192970
EST:     CGCAACCTGAAGTCAAGCTTTTCGGGCGCTGGTCGTTCGACGACATCGAG                         ATTAACGATATCTCTCTGGCGGATTACATTGCCGTGTCGGTGGACAAGCAT
genomic: CGCAACCTGAAGTCAAGCTTTTCGGGCGCTGGTCGTTCGACGACATCGAGgttcgttttt ... gggtgtgcagATTAACGATATCTCTCTGGCGGATTACATTGCCGTGTCGGTGGACAAGCAT
EST: gi|67720521|gb|BJ970780.1|BJ970780
EST:     CGCAACCTGAAGTCAAGCTTTTCGGGCGCTGGTCGTTCGACGACATCGAG                         ATTAACGATATCTCTCTGGCGGATTACATTGCCGTGTCGGTGGACAAGCAT
genomic: CGCAACCTGAAGTCAAGCTTTTCGGGCGCTGGTCGTTCGACGACATCGAGgttcgttttt ... gggtgtgcagATTAACGATATCTCTCTGGCGGATTACATTGCCGTGTCGGTGGACAAGCAT
EST: gi|208389651|gb|DC938269.1|DC938269
EST:     CGCAACCTGAAGTCAAGCTTTTCGGGCGCTGGTCGTTCGACGACATCGAG                         ATTAACGATATCTCTCTGGCGGATTACATTGCCGTGTCGGTGGACAAGCAT
genomic: CGCAACCTGAAGTCAAGCTTTTCGGGCGCTGGTCGTTCGACGACATCGAGgttcgttttt ... gggtgtgcagATTAACGATATCTCTCTGGCGGATTACATTGCCGTGTCGGTGGACAAGCAT
EST: gi|67703586|gb|BJ963819.1|BJ963819
EST:     CGCAACCTGAAGTCAAGCTTTTCGGGCGCTGGTCGTTCGACGACATCGAG                         ATTAACGATATCTCTCTGGCGGATTACATTGCCGTGTCGGTGGACAAGCAT
genomic: CGCAACCTGAAGTCAAGCTTTTCGGGCGCTGGTCGTTCGACGACATCGAGgttcgttttt ... gggtgtgcagATTAACGATATCTCTCTGGCGGATTACATTGCCGTGTCGGTGGACAAGCAT
EST: gi|67709628|gb|BJ965444.1|BJ965444
EST:     CGCAACCTGAAGTCAAGCTTTTCGGGCGCTGGTCGTTCGACGACATCGAG                         ATTAACGATATCTCTCTGGCGGATTACATTGCCGTGTCGGTGGACAAGCAT
genomic: CGCAACCTGAAGTCAAGCTTTTCGGGCGCTGGTCGTTCGACGACATCGAGgttcgttttt ... gggtgtgcagATTAACGATATCTCTCTGGCGGATTACATTGCCGTGTCGGTGGACAAGCAT
EST: gi|67574589|gb|BJ947413.1|BJ947413
EST:     CGCAACCTGAAGTCAAGCTTTTCGGGCGCTGGTCGTTCGACGACATCGAG                         ATTAACGATATCTCTCTGGCGGATTACATTGCCGTGTCGGTGGACAAGCAT
genomic: CGCAACCTGAAGTCAAGCTTTTCGGGCGCTGGTCGTTCGACGACATCGAGgttcgttttt ... gggtgtgcagATTAACGATATCTCTCTGGCGGATTACATTGCCGTGTCGGTGGACAAGCAT
EST: gi|162166351|gb|FC342944.1|FC342944
EST:     CGCAACCTGAAGTCAAGCTTTTCGGGCGCTGGTCGTTCGACGACATCGAG                         ATTAACGATATCTCTCTGGCGGATTACATTGCCGTGTCGGTGGACAAGCAT
genomic: CGCAACCTGAAGTCAAGCTTTTCGGGCGCTGGTCGTTCGACGACATCGAGgttcgttttt ... gggtgtgcagATTAACGATATCTCTCTGGCGGATTACATTGCCGTGTCGGTGGACAAGCAT
EST: gi|67702960|gb|BJ963193.1|BJ963193
EST:     CGCAACCTGAAGTCAAGCTTTTCGGGCGCTGGTCGTTCGACGACATCGAG                         ATTAACGATATCTCTCTGGCGGATTACATTGCCGTGTCGGTGGACAAGCAT
genomic: CGCAACCTGAAGTCAAGCTTTTCGGGCGCTGGTCGTTCGACGACATCGAGgttcgttttt ... gggtgtgcagATTAACGATATCTCTCTGGCGGATTACATTGCCGTGTCGGTGGACAAGCAT
EST: gi|100364481|gb|BY984625.1|BY984625
EST:     CGCAACCTGAAGTCAAGCTTTTCGGGCGCTGGTCGTTCGACGACATCGAG                         ATTAACGATATCTCTCTGGCGGATTACATTGCCGTGTCGGTGGACAAGCAT
genomic: CGCAACCTGAAGTCAAGCTTTTCGGGCGCTGGTCGTTCGACGACATCGAGgttcgttttt ... gggtgtgcagATTAACGATATCTCTCTGGCGGATTACATTGCCGTGTCGGTGGACAAGCAT
EST: gi|162259285|gb|FC436189.1|FC436189
EST:     CGCAACCTGAAGTCAAGCTTTTCGGGCGCTGGTCGTTCGACGACATCGAG                         ATTAACGATATCTCTCTGGCGGATTACATTGCCGTGTCGGTGGACAAGCAT
genomic: CGCAACCTGAAGTCAAGCTTTTCGGGCGCTGGTCGTTCGACGACATCGAGgttcgttttt ... gggtgtgcagATTAACGATATCTCTCTGGCGGATTACATTGCCGTGTCGGTGGACAAGCAT
EST: gi|37846219|gb|BJ604227.1|BJ604227
EST:     CGCAACCTGAAGTCAAGCTTTTCGGGCGCTGGTCGTTCGACGACATCGAG                         ATTAACGATATCTCTCTGGCGGATTACATTGCCGTGTCGGTGGACAAGCAT
genomic: CGCAACCTGAAGTCAAGCTTTTCGGGCGCTGGTCGTTCGACGACATCGAGgttcgttttt ... gggtgtgcagATTAACGATATCTCTCTGGCGGATTACATTGCCGTGTCGGTGGACAAGCAT
EST: gi|67702987|gb|BJ963220.1|BJ963220
EST:     CGCAACCTGAAGTCAAGCTTTTCGGGCGCTGGTCGTTCGACGACATCGAG                         ATTAACGATATCTCTCTGGCGGATTACATTGCCGTGTCGGTGGACAAGCAT
genomic: CGCAACCTGAAGTCAAGCTTTTCGGGCGCTGGTCGTTCGACGACATCGAGgttcgttttt ... gggtgtgcagATTAACGATATCTCTCTGGCGGATTACATTGCCGTGTCGGTGGACAAGCAT
EST: gi|67723703|gb|BJ973962.1|BJ973962
EST:     CGCAACCTGAAGTCAAGCTTTTCGGGCGCTGGTCGTTCGACGACATCGAG                         ATTAACGATATCTCTCTGGCGGATTACATTGCCGTGTCGGTGGACAAGCAT
genomic: CGCAACCTGAAGTCAAGCTTTTCGGGCGCTGGTCGTTCGACGACATCGAGgttcgttttt ... gggtgtgcagATTAACGATATCTCTCTGGCGGATTACATTGCCGTGTCGGTGGACAAGCAT

RNA-Seq data


 ATGC   Supported by RNA-Seq exonic block that spans over the splice site

 atgs   Truncated intron sequence

Each block is as long as the maximal overhang of any read spanning the junction.
The score is the number of alignments spanning the junction.


Found data for 1 RNA-Seqlibrary.


Block sizes: 35 (upstream exon), 35 (downstream exon)
Score: 144

CTCGCCTAGACCACTCCCACGCTCCTCTGCCGCGCCAACCATGGCTGTCGCGCAACCTGAAGTCAAGCTTTTCGGGCGCTGGTCGTTCGACGACATCGAGgttcgttttt ... gggtgtgcagATTAACGATATCTCTCTGGCGGATTACATTGCCGTGTCGGTGGACAAGCATGCCACCTTCGTGCCCCACACCGCCGGGCGGTACTCCGTGAAGCGTTTCA




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Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
CTCGCCTAGACCACTCCCACGCTCCTCTGCCGCGCCAACCATGGCTGTCGCGCAACCTGAAGTCAAGCTTTTCGGGCGCTGGTCGTTCGACGACATCGAGgttcgtttttttcccaccacttcagcctgtcttcacgttctctgcctaactgttttgtggaacgcggggtttagggtttttcggtggcaaggttttgagg

- - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  CAAGCT