1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' |
GGCGCCAAGCTGCGGGACGTGGGGATTGAGTGTGGGAGATGCGGGAAGAAAGGTTCTAGGTCGGAGGGTATTGTGGCAGCTGCTCGGAAGTCCACCCCAGgtcagtgtcaattcctttctggattgcgcatttgctgcttgcgtgagaagcgttttggggtttagttggttgagttagggttttggaaggtctcttggga...
species | Physcomitrella patens |
transcript | PP1S110_13V6.1 |
intron # | 1 |
splice site | 5' |
intron type | U2 |
EST: AGGTTCTAGGTCGGAGGGTATTGTGGCAGCTGCTCGGAAGTCCACCCCAG AGCAAGAGGAGTACGTTGTTACCAAGAATGATTCGAATGAGTACATTGAAAEST: gi|100451985|gb|CJ975042.1|CJ975042
genomic: AGGTTCTAGGTCGGAGGGTATTGTGGCAGCTGCTCGGAAGTCCACCCCAGgtcagtgtca ... ttaatggcagAGCAAGAGGAGTACGTTGTTACCAAGAATGATTCGAATGAGTACATTGAAA
EST: AGGTTCTAGGTCGGAGGGTATTGTGGCAGCTGCTCGGAAGTCCACCCCAG AGCAAGAGGAGTACGTTGATACCAAGAATGATTCGAATGAGTACATTGAAAEST: gi|208352398|gb|DC906181.1|DC906181
genomic: AGGTTCTAGGTCGGAGGGTATTGTGGCAGCTGCTCGGAAGTCCACCCCAGgtcagtgtca ... ttaatggcagAGCAAGAGGAGTACGTTGTTACCAAGAATGATTCGAATGAGTACATTGAAA
EST: AGGTTCTAGGTCGGAGGGTATTGTGGCAGCTGCTCGGAAGTCCACCCCAG AGCAAGAGGAGTACGTTGTTACCAAGAATGATTCGAATGAGTACATTGAAAEST: gi|18372257|gb|BJ203859.1|BJ203859
genomic: AGGTTCTAGGTCGGAGGGTATTGTGGCAGCTGCTCGGAAGTCCACCCCAGgtcagtgtca ... ttaatggcagAGCAAGAGGAGTACGTTGTTACCAAGAATGATTCGAATGAGTACATTGAAA
EST: GGTTCTAGGTCGGAGGGTATTGTGGCAGCTGCTTCGGAAGTCCACCCCAG AGCAAGAGGAGTACGTTGTTACCAAGAATGATTCGAATGAGTACATTGAAAEST: gi|100429860|gb|BY978125.1|BY978125
genomic: GGTTCTAGGTCGGAGGGTATTGTGGCAGCTGCT-CGGAAGTCCACCCCAGgtcagtgtca ... ttaatggcagAGCAAGAGGAGTACGTTGTTACCAAGAATGATTCGAATGAGTACATTGAAA
EST: AGGTTCTAGGTCGGAGGGTATTGTGGCAGCTGCTCGGAAGTCCACCCCAG AGCAAGAGGAGTACGTTGTTACCAAGAATGATTCGAATGAGTACATTGAAAEST: gi|100440859|gb|BY962347.1|BY962347
genomic: AGGTTCTAGGTCGGAGGGTATTGTGGCAGCTGCTCGGAAGTCCACCCCAGgtcagtgtca ... ttaatggcagAGCAAGAGGAGTACGTTGTTACCAAGAATGATTCGAATGAGTACATTGAAA
EST: AGGTTCTAGGTCGGAGGGTATTGTGGCAGCTGCTCGGAAGTCCACCCCAG AGCAAGAGGAGTACGTTGTTACCAAGAATGATTCGAATGAGTACATTGAAAEST: gi|100442213|gb|BY963106.1|BY963106
genomic: AGGTTCTAGGTCGGAGGGTATTGTGGCAGCTGCTCGGAAGTCCACCCCAGgtcagtgtca ... ttaatggcagAGCAAGAGGAGTACGTTGTTACCAAGAATGATTCGAATGAGTACATTGAAA
EST: AGGTTCTAGGTCGGAGGGTATTGTGGCAGCTGCTCGGAAGTCCACCCCAG AGCAAGAGGAGTACGTTGTTACCAAGAATGATTCGAATGAGTACATTGAAAEST: gi|18356867|gb|BJ188926.1|BJ188926
genomic: AGGTTCTAGGTCGGAGGGTATTGTGGCAGCTGCTCGGAAGTCCACCCCAGgtcagtgtca ... ttaatggcagAGCAAGAGGAGTACGTTGTTACCAAGAATGATTCGAATGAGTACATTGAAA
EST: GGTTCTAGGTCGGAGGGTATTGTGGCAGCCTGCTCGGAAGTCCACCCCAG AGCAAGAGGAGTACGTTGTTACCAAGAATGATTCGAATGAGTACATTGAAAEST: gi|208357241|gb|DC910652.1|DC910652
genomic: GGTTCTAGGTCGGAGGGTATTGTGGCAGC-TGCTCGGAAGTCCACCCCAGgtcagtgtca ... ttaatggcagAGCAAGAGGAGTACGTTGTTACCAAGAATGATTCGAATGAGTACATTGAAA
EST: AGGTTCTAGGTCGGAGGGTATTGTGGCAGCTGCTCGGAAGTCCACCCCAG AGCAAGAGGAGTACGTTGTTACCAAGAATGATTCGAATGAGTACATTGAAAEST: gi|162176403|gb|FC353588.1|FC353588
genomic: AGGTTCTAGGTCGGAGGGTATTGTGGCAGCTGCTCGGAAGTCCACCCCAGgtcagtgtca ... ttaatggcagAGCAAGAGGAGTACGTTGTTACCAAGAATGATTCGAATGAGTACATTGAAA
EST: AGGTTCTAGGTCGGAGGGTATTGTGGCAGCTGCTCGGAAGTCCACCCCAG AGCAAGAGGAGTACGTTGTTACCAAGAATGATTCGAATGAGTACATTGAAAEST: gi|162184458|gb|FC359204.1|FC359204
genomic: AGGTTCTAGGTCGGAGGGTATTGTGGCAGCTGCTCGGAAGTCCACCCCAGgtcagtgtca ... ttaatggcagAGCAAGAGGAGTACGTTGTTACCAAGAATGATTCGAATGAGTACATTGAAA
EST: AGGTTCTAGGTCGGAGGGTATTGTGGCAGCTGCTCGGAAGTCCACCCCAG AGCAAGAGGAGTACGTTGTTACCAAGAATGATTCGAATGAGTACATTGAAA
genomic: AGGTTCTAGGTCGGAGGGTATTGTGGCAGCTGCTCGGAAGTCCACCCCAGgtcagtgtca ... ttaatggcagAGCAAGAGGAGTACGTTGTTACCAAGAATGATTCGAATGAGTACATTGAAA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GGCGCCAAGCTGCGGGACGTGGGGATTGAGTGTGGGAGATGCGGGAAGAAAGGTTCTAGGTCGGAGGGTATTGTGGCAGCTGCTCGGAAGTCCACCCCAGgtcagtgtcaattcctttctggattgcgcatttgctgcttgcgtgagaagcgttttggggtttagttggttgagttagggttttggaaggtctcttggga
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGCT