1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' | 16 5' 3' | 17 5' 3' | 18 5' 3' | 19 5' 3' |
ACTGCCCTAGGGCTTCGCCACCATGCCTGCCATCAATGGCGACCGTCTCTTCACCTTCGAAGAAGGTGAACAGGAGAGCGAGTATGGATACGTTCGCAAGgtcatcctccttcaccgatccctcaatttcgcatgtctggtgttctttccctcattgtattgctgcgtgcgcgatgagtgcccggatcgattgagatttt...
species | Physcomitrella patens |
transcript | PP1S10_201V6.1 |
intron # | 1 |
splice site | 5' |
intron type | U2 |
EST: TCACCTTCGAAGAAGGTGAACAGGAGAGCGAGTATGGATACGTTCGCAAG GTCTCCGGGCCAGTGGTGGTAGCTGATGGAATGGGAGGAGCAGCTATGTATEST: gi|100435827|gb|BY961110.1|BY961110
genomic: TCACCTTCGAAGAAGGTGAACAGGAGAGCGAGTATGGATACGTTCGCAAGgtcatcctcc ... ttcttgtcagGTCTCCGGGCCAGTGGTGGTAGCTGATGGAATGGGAGGAGCAGCTATGTAT
EST: TCACCTTCGAAGAAGGTGAACAGGAGAGCGAGTATGGATACGTTCGCAAG GTCTCCGGGCCAGTGGTGGTAGCTGATGGAATGGGAGGAGCAGCTATGTATEST: gi|208386343|gb|DC932839.1|DC932839
genomic: TCACCTTCGAAGAAGGTGAACAGGAGAGCGAGTATGGATACGTTCGCAAGgtcatcctcc ... ttcttgtcagGTCTCCGGGCCAGTGGTGGTAGCTGATGGAATGGGAGGAGCAGCTATGTAT
EST: TCACCTTCGAAGAAGGTGAACAGGAGAGCGAGTATGGATACGTTCGCAAG GTCTCCGGGCCAGTGGTGGTAGCTGATGGAATGGGAGGAGCAGCTATGTATEST: gi|67712888|gb|BJ966337.1|BJ966337
genomic: TCACCTTCGAAGAAGGTGAACAGGAGAGCGAGTATGGATACGTTCGCAAGgtcatcctcc ... ttcttgtcagGTCTCCGGGCCAGTGGTGGTAGCTGATGGAATGGGAGGAGCAGCTATGTAT
EST: TCACCTTCGAAGAAGGTGAACAGGAGAGCGAGTATGGATACGTTCGCAAG GTCTCCGGGCCAGTGGTGGTAGCTGATGGAATGGGAGGAGCAGCTATGTATEST: gi|22492630|gb|BU052553.1|BU052553
genomic: TCACCTTCGAAGAAGGTGAACAGGAGAGCGAGTATGGATACGTTCGCAAGgtcatcctcc ... ttcttgtcagGTCTCCGGGCCAGTGGTGGTAGCTGATGGAATGGGAGGAGCAGCTATGTAT
EST: TCACCTTCGAAGAAGGTGAACAGGAGAGCGAGTATGGATACGTTCGCAAG GTCTCCGGGCCAGTGGTGGTAGCTGATGGAATGGGAGGAGCAGCTATGTATEST: gi|208357177|gb|DC942755.1|DC942755
genomic: TCACCTTCGAAGAAGGTGAACAGGAGAGCGAGTATGGATACGTTCGCAAGgtcatcctcc ... ttcttgtcagGTCTCCGGGCCAGTGGTGGTAGCTGATGGAATGGGAGGAGCAGCTATGTAT
EST: TCACCTTCGAAGAAGGTGAACAGGAGAGCGAGTATGGATACGTTCGCAAG GTCTCCGGGCCAGTGGTGGTAGCTGATGGAATGGGAGGAGCAGCTATGTATEST: gi|18326894|gb|BJ158894.1|BJ158894
genomic: TCACCTTCGAAGAAGGTGAACAGGAGAGCGAGTATGGATACGTTCGCAAGgtcatcctcc ... ttcttgtcagGTCTCCGGGCCAGTGGTGGTAGCTGATGGAATGGGAGGAGCAGCTATGTAT
EST: TCACCTTCGAAGAAGGTGAACAGGAGAGCGAGTATGGATACGTTCGCAAG GTCTCCGGGCCAGTGGTGGTAGCTGATGGAATGGGAGGAGCAGCTATGTATEST: gi|100418058|gb|BY993315.1|BY993315
genomic: TCACCTTCGAAGAAGGTGAACAGGAGAGCGAGTATGGATACGTTCGCAAGgtcatcctcc ... ttcttgtcagGTCTCCGGGCCAGTGGTGGTAGCTGATGGAATGGGAGGAGCAGCTATGTAT
EST: TCACCTTCGAAGAAGGTGAACAGGAGAGCGAGTATGGATACGTTCGCAAG GTCTCCGGGCCAGTGGTGGTAGCTGATGGAATGGGAGGAGCAGCTATGTAT
genomic: TCACCTTCGAAGAAGGTGAACAGGAGAGCGAGTATGGATACGTTCGCAAGgtcatcctcc ... ttcttgtcagGTCTCCGGGCCAGTGGTGGTAGCTGATGGAATGGGAGGAGCAGCTATGTAT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ACTGCCCTAGGGCTTCGCCACCATGCCTGCCATCAATGGCGACCGTCTCTTCACCTTCGAAGAAGGTGAACAGGAGAGCGAGTATGGATACGTTCGCAAGgtcatcctccttcaccgatccctcaatttcgcatgtctggtgttctttccctcattgtattgctgcgtgcgcgatgagtgcccggatcgattgagatttt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - CGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGAGA