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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTTTGAAGGTTGGTGCACTGCTGGAGCAGAGATTTTAGAGAGAAGTGGTGTGGCGGAGAATTCATGGCGTCAAGGAGAATTGGAGGGGTGTTGCTCGCAGgtgggtactcacggtttttcttgggccggagattcactttaacgatcggttgattgatgttgtcttgagttattgctcgttgttacaggagtatgaactt...

Basic information

species Physcomitrella patens
transcript PP1S106_16V6.1
intron # 1
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|208384946|gb|DC903453.1|DC903453
EST:     TGGCGGAGAATTCATGGCGTCAAGGAGAATTGGAGGGGTGTTGCTCGCAG                         GTTCGAGGGCCTTATCTAGGCAGCATGGACTTACTGGTGCCTCTGCAGCGG
genomic: TGGCGGAGAATTCATGGCGTCAAGGAGAATTGGAGGGGTGTTGCTCGCAGgtgggtactc ... aaattaacagGTTCGAGGGCCTTATCTAGGCAGCATGGACTTACTGGTGCCTCTGCAGCGG
EST: gi|162272414|gb|FC449053.1|FC449053
EST:     TGGCGGAGAATTCATGGCGTCAAGGAGAATTGGAGGGGTGTTGCTCGCAG                         GTTCGAGGGCCTTATCTAGGCAGCATGGACTTACTGGTGCCTCTGCAGCGG
genomic: TGGCGGAGAATTCATGGCGTCAAGGAGAATTGGAGGGGTGTTGCTCGCAGgtgggtactc ... aaattaacagGTTCGAGGGCCTTATCTAGGCAGCATGGACTTACTGGTGCCTCTGCAGCGG
EST: gi|18330797|gb|BJ162803.1|BJ162803
EST:     TGGCGGAGAATTCATGGCGTCAAGGAGAATTGGAGGGGTGTTGCTCGCAG                         GTTCGAGGGCCTTATCTAGGCAGCATGGACTTACTGGTGCCTCTGCAGCGG
genomic: TGGCGGAGAATTCATGGCGTCAAGGAGAATTGGAGGGGTGTTGCTCGCAGgtgggtactc ... aaattaacagGTTCGAGGGCCTTATCTAGGCAGCATGGACTTACTGGTGCCTCTGCAGCGG
EST: gi|100433033|gb|BY978779.1|BY978779
EST:     TGGCGGAGAATTCATGGCGTCAAGGAGAATTGGAGGGGTGTTGCTCGCAG                         GTTCGAGGGCCTTATCTAGGCAGCATGGACTTACTGGTGCCTCTGCAGCGG
genomic: TGGCGGAGAATTCATGGCGTCAAGGAGAATTGGAGGGGTGTTGCTCGCAGgtgggtactc ... aaattaacagGTTCGAGGGCCTTATCTAGGCAGCATGGACTTACTGGTGCCTCTGCAGCGG
EST: gi|100442391|gb|BY981415.1|BY981415
EST:     TGGCGGAGAATTCATGGCGTCAAGGAGAATTGGAGGGGTGTTGCTCGCAG                         GTTCGAGGGCCTTATCTAGGCAGCATGGACTTACTGGTGCCTCTGCAGCGG
genomic: TGGCGGAGAATTCATGGCGTCAAGGAGAATTGGAGGGGTGTTGCTCGCAGgtgggtactc ... aaattaacagGTTCGAGGGCCTTATCTAGGCAGCATGGACTTACTGGTGCCTCTGCAGCGG
EST: gi|18327178|gb|BJ159180.1|BJ159180
EST:     TGGCGGAGAATTCATGGCGTCAAGGAGAATTGGAGGGGTGTTGCTCGCAG                         GTTCGAGGGCCTTATCTAGGCAGCATGGACTTACTGGTGCCTCTGCAGCGG
genomic: TGGCGGAGAATTCATGGCGTCAAGGAGAATTGGAGGGGTGTTGCTCGCAGgtgggtactc ... aaattaacagGTTCGAGGGCCTTATCTAGGCAGCATGGACTTACTGGTGCCTCTGCAGCGG
EST: gi|100443652|gb|BY963749.1|BY963749
EST:     TGGCGGAGAATTCATGGCGTCAAGGAGAATTGGAGGGGTGTTGCTCGCAG                         GTTCGAGGGCCTTATCTAGGCAGCATGGACTTACTGGTGCCTCTGCAGCGG
genomic: TGGCGGAGAATTCATGGCGTCAAGGAGAATTGGAGGGGTGTTGCTCGCAGgtgggtactc ... aaattaacagGTTCGAGGGCCTTATCTAGGCAGCATGGACTTACTGGTGCCTCTGCAGCGG
EST: gi|100376437|gb|BY986166.1|BY986166
EST:     TGGCGGAGAATTCATGGCGTCAAGGAGAATTGGAGGGGTGTTGCTCGCAG                         GTTCGAGGGCCTTATCTAGGCAGCATGGACTTACTGGTGCCTCTGCAGCGG
genomic: TGGCGGAGAATTCATGGCGTCAAGGAGAATTGGAGGGGTGTTGCTCGCAGgtgggtactc ... aaattaacagGTTCGAGGGCCTTATCTAGGCAGCATGGACTTACTGGTGCCTCTGCAGCGG
EST: gi|100389978|gb|BY989058.1|BY989058
EST:     TGGCGGAGAATTCATGGCGTCAAGGAGAATTGGAGGGGTCTTGCTCGCAG                         GTTCGAGGGCCTTATCTAGGCAGCATGGACTTACTGGTGCCTCTGCAGCGG
genomic: TGGCGGAGAATTCATGGCGTCAAGGAGAATTGGAGGGGTGTTGCTCGCAGgtgggtactc ... aaattaacagGTTCGAGGGCCTTATCTAGGCAGCATGGACTTACTGGTGCCTCTGCAGCGG
EST: gi|208391546|gb|DC933795.1|DC933795
EST:     TGGCGGAGAATTCATGGCGTCAAGGAGAATTGGAGGGGTGTTGCTCGCAC                         GNTCCAGGGCCTTA
genomic: TGGCGGAGAATTCATGGCGTCAAGGAGAATTGGAGGGGTGTTGCTCGCAGgtgggtactc ... aaattaacagGTTCGAGGGCCTTA
EST: gi|100423908|gb|BY976585.1|BY976585
EST:     TGGCGGAGAATTCATGGCGTCAAGGAGAATTGGAGGGGTGTTGCTCGCAG                         GTTCGAGGGCCTTATCTAGGCAGCATGGACTTACTGGTGCCTCTGCAGCGG
genomic: TGGCGGAGAATTCATGGCGTCAAGGAGAATTGGAGGGGTGTTGCTCGCAGgtgggtactc ... aaattaacagGTTCGAGGGCCTTATCTAGGCAGCATGGACTTACTGGTGCCTCTGCAGCGG
EST: gi|100388263|gb|BY951865.1|BY951865
EST:     TGGCGGAGAATTCATGGCGTCAAGGAGAATTGGAGGGGTGTTGCTCGCAG                         GTTCGAGGGCCTTATCTAGGCAGCATGGACTTACTGGTGCCTCTGCAGCGG
genomic: TGGCGGAGAATTCATGGCGTCAAGGAGAATTGGAGGGGTGTTGCTCGCAGgtgggtactc ... aaattaacagGTTCGAGGGCCTTATCTAGGCAGCATGGACTTACTGGTGCCTCTGCAGCGG
EST: gi|18374969|gb|BJ206547.1|BJ206547
EST:     TGGCGGAGAATTCATGGCGTCAAGGGGAATTGGAGGGGTGTTGCTCGCAG                         GTTCGAGGGCCTTATCTAGGCAGCATGGACTTACTGGTGCCTCTGCAGCGG
genomic: TGGCGGAGAATTCATGGCGTCAAGGAGAATTGGAGGGGTGTTGCTCGCAGgtgggtactc ... aaattaacagGTTCGAGGGCCTTATCTAGGCAGCATGGACTTACTGGTGCCTCTGCAGCGG
EST: gi|100398640|gb|BY990442.1|BY990442
EST:     TGGCGGAGAATTCATGGCGTCAAGGAGAATTGGAGGGGTGTTGCTCGCAG                         GTTCGAGGGCCTTATCTAGGCAGCATGGACTTACTGGTGCCTCTGCAGCGG
genomic: TGGCGGAGAATTCATGGCGTCAAGGAGAATTGGAGGGGTGTTGCTCGCAGgtgggtactc ... aaattaacagGTTCGAGGGCCTTATCTAGGCAGCATGGACTTACTGGTGCCTCTGCAGCGG
EST: gi|100385283|gb|BY950875.1|BY950875
EST:     TGGCGGAGAATTCATGGCGTCAAGGAGAATTGGAGGGGTGTTGCTCGCAG                         GTTCGAGGGCCTTATCTAGGCAGCATGGACTTACTGGTGCCTCTGCAGCGG
genomic: TGGCGGAGAATTCATGGCGTCAAGGAGAATTGGAGGGGTGTTGCTCGCAGgtgggtactc ... aaattaacagGTTCGAGGGCCTTATCTAGGCAGCATGGACTTACTGGTGCCTCTGCAGCGG
EST: gi|100358870|gb|BY946730.1|BY946730
EST:     TGGCGGAGAATTCATGGCGTCAAGGAGAATTGGAGGGGTGTTGCTCGCAG                         GTTCGAGGGCCTTATCTAGGCAGCATGGACTTACTGGTGCCTCTGCAGCGG
genomic: TGGCGGAGAATTCATGGCGTCAAGGAGAATTGGAGGGGTGTTGCTCGCAGgtgggtactc ... aaattaacagGTTCGAGGGCCTTATCTAGGCAGCATGGACTTACTGGTGCCTCTGCAGCGG
EST: gi|208361729|gb|DC934969.1|DC934969
EST:     TGGCGGAGAATTCATGGCGTCAAGGAGAATTGGAGGGGTGTTGCTCGCAG                         GTTCGAGGGCCTTATCTAGGCAGCATGGACTTACTGGTGCCTCTGCAGCGG
genomic: TGGCGGAGAATTCATGGCGTCAAGGAGAATTGGAGGGGTGTTGCTCGCAGgtgggtactc ... aaattaacagGTTCGAGGGCCTTATCTAGGCAGCATGGACTTACTGGTGCCTCTGCAGCGG
EST: gi|100442905|gb|BY963400.1|BY963400
EST:     TGGCGGAGAATTCATGGCGTCAAGGAGAATTGGAGGGGTGTTGCTCGCAG                         GTTCGAGGGCCTTATCTAGGCAGCATGGACTTACTGGTGCCTCTGCAGCGG
genomic: TGGCGGAGAATTCATGGCGTCAAGGAGAATTGGAGGGGTGTTGCTCGCAGgtgggtactc ... aaattaacagGTTCGAGGGCCTTATCTAGGCAGCATGGACTTACTGGTGCCTCTGCAGCGG
EST: gi|100440203|gb|BY962116.1|BY962116
EST:     TGGCGGAGAATTCATGGCGTCAAGGAGAATTGGAGGGGTGTTGCTCGCAG                         GTTCGAGGGCCTTATCTAGGCAGCATGGACTTACTGGTGCCTCTGCAGCGG
genomic: TGGCGGAGAATTCATGGCGTCAAGGAGAATTGGAGGGGTGTTGCTCGCAGgtgggtactc ... aaattaacagGTTCGAGGGCCTTATCTAGGCAGCATGGACTTACTGGTGCCTCTGCAGCGG
EST: gi|100414968|gb|BY975102.1|BY975102
EST:     TGGCGGAGAATTCATGGCGTCAAGGAGAATTGGAGGGGTGTTGCTCGCAG                         GTTCGAGGGCCTTATCTAGGCAGCATGGACTTACTGGTGCCTCTGCAGCGG
genomic: TGGCGGAGAATTCATGGCGTCAAGGAGAATTGGAGGGGTGTTGCTCGCAGgtgggtactc ... aaattaacagGTTCGAGGGCCTTATCTAGGCAGCATGGACTTACTGGTGCCTCTGCAGCGG
EST: gi|100402552|gb|BY954892.1|BY954892
EST:     TGGCGGAGAATTCATGGCGTCAAGGAGAATTGGAGGGGTGTTGCTCGCAG                         GTTCGAGGGCCTTATCTAGGCAGCATGGACTTACTGGTGCCTCTGCAGCGG
genomic: TGGCGGAGAATTCATGGCGTCAAGGAGAATTGGAGGGGTGTTGCTCGCAGgtgggtactc ... aaattaacagGTTCGAGGGCCTTATCTAGGCAGCATGGACTTACTGGTGCCTCTGCAGCGG
EST: gi|162264750|gb|FC440317.1|FC440317
EST:     TGGCGGAGAATTCATGGCGTCAAGGAGAATTGGAGGGGTGTTGCTCGCAG                         GTTCGAGGGCCTTATCTAGGCAGCATGGACTTACTGGTGCCTCTGCAGCGG
genomic: TGGCGGAGAATTCATGGCGTCAAGGAGAATTGGAGGGGTGTTGCTCGCAGgtgggtactc ... aaattaacagGTTCGAGGGCCTTATCTAGGCAGCATGGACTTACTGGTGCCTCTGCAGCGG
EST: gi|208361815|gb|DC939037.1|DC939037
EST:     TGGCGGAGAATTCATGGCGTCAAGGAGAATTGGAGGGGTGTTGCTCGCAG                         GTTCGAGGGCCTTATCTAGGCAGCATGGACTTACTGGTGCCTCTGCAGCGG
genomic: TGGCGGAGAATTCATGGCGTCAAGGAGAATTGGAGGGGTGTTGCTCGCAGgtgggtactc ... aaattaacagGTTCGAGGGCCTTATCTAGGCAGCATGGACTTACTGGTGCCTCTGCAGCGG
EST: gi|18373891|gb|BJ205469.1|BJ205469
EST:     TGGCGGAGAATTCATGGCGTCAAGGAGAATTGGAGGGGTGTTGCTCGCAG                         GTTCGAGGGCCTTATCTAGGCAGCATGGACTTACTGGTGCCTCTGCAGCGG
genomic: TGGCGGAGAATTCATGGCGTCAAGGAGAATTGGAGGGGTGTTGCTCGCAGgtgggtactc ... aaattaacagGTTCGAGGGCCTTATCTAGGCAGCATGGACTTACTGGTGCCTCTGCAGCGG
EST: gi|100424612|gb|BY976727.1|BY976727
EST:     TGGCGGAGAATTCATGGCGTCAAGGAGAATTGGAGGGGTGTTGCTCGCAG                         GTTCGAGGGCCTTATCTAGGCAGCATGGACTTACTGGTGCCTCTGCAGCGG
genomic: TGGCGGAGAATTCATGGCGTCAAGGAGAATTGGAGGGGTGTTGCTCGCAGgtgggtactc ... aaattaacagGTTCGAGGGCCTTATCTAGGCAGCATGGACTTACTGGTGCCTCTGCAGCGG
EST: gi|100361536|gb|BY984055.1|BY984055
EST:     TGGCGGAGAATTCATGGCGTCAAGGAGAATTGGAGGGGTGTTGCTCGCAG                         GTTCGAGGGCCTTATCTAGGCAGCATGGACTTACTGGTGCCTCTGCAGCGG
genomic: TGGCGGAGAATTCATGGCGTCAAGGAGAATTGGAGGGGTGTTGCTCGCAGgtgggtactc ... aaattaacagGTTCGAGGGCCTTATCTAGGCAGCATGGACTTACTGGTGCCTCTGCAGCGG
EST: gi|100429739|gb|BY959714.1|BY959714
EST:     TGGCGGAGAATTCATGGCGTCAAGGAGAATTGGAGGGGTGTTGCTCGCAG                         GTTCGAGGGCCTTATCTAGGCAGCATGGACTTACTGGTGCCTCTGCAGCGG
genomic: TGGCGGAGAATTCATGGCGTCAAGGAGAATTGGAGGGGTGTTGCTCGCAGgtgggtactc ... aaattaacagGTTCGAGGGCCTTATCTAGGCAGCATGGACTTACTGGTGCCTCTGCAGCGG
EST: gi|100353592|gb|BY964884.1|BY964884
EST:     TGGCGGAGAATTCATGGCGTCAAGGAGAATTGGAGGGGTGTTGCTCGCAG                         GTTCGAGGGCCTTATCTAGGCAGCATGGACTTACTGGTGCCTCTGCAGCGG
genomic: TGGCGGAGAATTCATGGCGTCAAGGAGAATTGGAGGGGTGTTGCTCGCAGgtgggtactc ... aaattaacagGTTCGAGGGCCTTATCTAGGCAGCATGGACTTACTGGTGCCTCTGCAGCGG
EST: gi|100398916|gb|BY990580.1|BY990580
EST:     TGGCGGAGAATTCATGGCGTCAAGGAGAATTGGAGGGGTGTTGCTCGCAG                         GTTCGAGGGCCTTATCTAGGCAGCATGGACTTACTGGTGCCTCTGCAGCGG
genomic: TGGCGGAGAATTCATGGCGTCAAGGAGAATTGGAGGGGTGTTGCTCGCAGgtgggtactc ... aaattaacagGTTCGAGGGCCTTATCTAGGCAGCATGGACTTACTGGTGCCTCTGCAGCGG
EST: gi|208363654|gb|DC935349.1|DC935349
EST:     TGGCGGAGAATTCATGGCGTCAAGGAGAATTGGAGGGGTGTTGCTCGCAG                         GTTCGAGGGCCTTATCTAGGCAGCATGGACTTACTGGTGCCTCTGCAGCGG
genomic: TGGCGGAGAATTCATGGCGTCAAGGAGAATTGGAGGGGTGTTGCTCGCAGgtgggtactc ... aaattaacagGTTCGAGGGCCTTATCTAGGCAGCATGGACTTACTGGTGCCTCTGCAGCGG
EST: gi|100386649|gb|BY970190.1|BY970190
EST:     TGGCGGAGAATTCATGGCGTCAAGGAGAATTGGAGGGGTGTTGCTCGCAG                         GTTCGAGGGCCTTATCTAGGCAGCATGGACTTACTGGTGCCTCTGCAGCGG
genomic: TGGCGGAGAATTCATGGCGTCAAGGAGAATTGGAGGGGTGTTGCTCGCAGgtgggtactc ... aaattaacagGTTCGAGGGCCTTATCTAGGCAGCATGGACTTACTGGTGCCTCTGCAGCGG
EST: gi|18346203|gb|BJ178246.1|BJ178246
EST:     TGGCGGAGAATTCATGGCGTCAAGGAGAATTGGAGGGGTGTTGCTCGCAG                         GTTCGAGGGCCTTATCTAGGCAGCATGGACTTACTGGTGCCTCTGCAGCGG
genomic: TGGCGGAGAATTCATGGCGTCAAGGAGAATTGGAGGGGTGTTGCTCGCAGgtgggtactc ... aaattaacagGTTCGAGGGCCTTATCTAGGCAGCATGGACTTACTGGTGCCTCTGCAGCGG
EST: gi|100396166|gb|BY972267.1|BY972267
EST:     TGGCGGAGAATTCATGGCGTCAAGGAGAATTGGAGGGGTGTTGCTCGCAG                         GTTCGAGGGCCTTATCTAGGCAGCATGGACTTACTGGTGCCTCTGCAGCGG
genomic: TGGCGGAGAATTCATGGCGTCAAGGAGAATTGGAGGGGTGTTGCTCGCAGgtgggtactc ... aaattaacagGTTCGAGGGCCTTATCTAGGCAGCATGGACTTACTGGTGCCTCTGCAGCGG
EST: gi|67574343|gb|BJ947167.1|BJ947167
EST:     TGGCGGAGAATTCATGGCGTCAAGGAGAATTGGAGGGGTGTTGCTCGCAG                         GTTCGAGGGCCTTATCTAGGCAGCATGGACTTACTGGTGCCTCTGCAGCGG
genomic: TGGCGGAGAATTCATGGCGTCAAGGAGAATTGGAGGGGTGTTGCTCGCAGgtgggtactc ... aaattaacagGTTCGAGGGCCTTATCTAGGCAGCATGGACTTACTGGTGCCTCTGCAGCGG
EST: gi|100433798|gb|BY960712.1|BY960712
EST:     TGGCGGAGAATTCATGGCGTCAAGGAGAATTGGAGGGGTGTTGCTCGCAG                         GTTCGAGGGCCTTATCTAGGCAGCATGGACTTACTGGTGCCTCTGCAGCGG
genomic: TGGCGGAGAATTCATGGCGTCAAGGAGAATTGGAGGGGTGTTGCTCGCAGgtgggtactc ... aaattaacagGTTCGAGGGCCTTATCTAGGCAGCATGGACTTACTGGTGCCTCTGCAGCGG
EST: gi|162266592|gb|FC441978.1|FC441978
EST:     TGGCGGAGAATTCATGGCGTCAAGGAGAATTGGAGGGGTGTTGCTCGCAG                         GTTCGAGGGCCTTATCTAGGCAGCATGGACTTACTGGTGCCTCTGCAGCGG
genomic: TGGCGGAGAATTCATGGCGTCAAGGAGAATTGGAGGGGTGTTGCTCGCAGgtgggtactc ... aaattaacagGTTCGAGGGCCTTATCTAGGCAGCATGGACTTACTGGTGCCTCTGCAGCGG
EST: gi|100422587|gb|BY976448.1|BY976448
EST:     TGGCGGAGAATTCATGGCGTCAAGGAGAATTGGAGGGGTGTTGCTCGCAG                         GTTCGAGGGCCTTATCTAGGCAGCATGGACTTACTGGTGCCTCTGCAGCGG
genomic: TGGCGGAGAATTCATGGCGTCAAGGAGAATTGGAGGGGTGTTGCTCGCAGgtgggtactc ... aaattaacagGTTCGAGGGCCTTATCTAGGCAGCATGGACTTACTGGTGCCTCTGCAGCGG
EST: gi|162274536|gb|FC450979.1|FC450979
EST:     TGGCGGAGAATTCATGGCGTCAAGGAGAATTGGAGGGGTGTTGCTCGCAG                         GTTCGAGGGCCTTATCTAGGCAGCATGGACTTACTGGTGCCTCTGCAGCGG
genomic: TGGCGGAGAATTCATGGCGTCAAGGAGAATTGGAGGGGTGTTGCTCGCAGgtgggtactc ... aaattaacagGTTCGAGGGCCTTATCTAGGCAGCATGGACTTACTGGTGCCTCTGCAGCGG
EST: gi|100441950|gb|BY981173.1|BY981173
EST:     TGGCGGAGAATTCATGGCGTCAAGGAGAATTGGAGGGGTGTTGCTCGCAG                         GTTCGAGGGCCTTATCTAGGCAGCATGGACTTACTGGTGCCTCTGCAGCGG
genomic: TGGCGGAGAATTCATGGCGTCAAGGAGAATTGGAGGGGTGTTGCTCGCAGgtgggtactc ... aaattaacagGTTCGAGGGCCTTATCTAGGCAGCATGGACTTACTGGTGCCTCTGCAGCGG
EST: gi|100351703|gb|BY964507.1|BY964507
EST:     TGGCGGAGAATTCATGGCGTCAAGGAGAATTGGAGGGGTGTTGCTCGCAG                         GTTCGAGGGCCTTATCTAGGCAGCATGGACTTACTGGTGCCTCTGCAGCGG
genomic: TGGCGGAGAATTCATGGCGTCAAGGAGAATTGGAGGGGTGTTGCTCGCAGgtgggtactc ... aaattaacagGTTCGAGGGCCTTATCTAGGCAGCATGGACTTACTGGTGCCTCTGCAGCGG
EST: gi|100359398|gb|BY984234.1|BY984234
EST:     TGGCGGAGAATTCATGGCGTCAAGGAGAATTGGAGGGGTGTTGCTCGCAG                         GTTCGAGGGCCTTATCTAGGCAGCATGGACTTACTGGTGCCTCTGCAGCGG
genomic: TGGCGGAGAATTCATGGCGTCAAGGAGAATTGGAGGGGTGTTGCTCGCAGgtgggtactc ... aaattaacagGTTCGAGGGCCTTATCTAGGCAGCATGGACTTACTGGTGCCTCTGCAGCGG
EST: gi|67574307|gb|BJ947131.1|BJ947131
EST:     TGGCGGAGAATTCATGGCGTCAAGGAGAATTGGAGGGGTGTTGCTCGCAG                         GTTCGAGGGCCTTATCTAGGCAGCATGGACTTACTGGTGCCTCTGCAGCGG
genomic: TGGCGGAGAATTCATGGCGTCAAGGAGAATTGGAGGGGTGTTGCTCGCAGgtgggtactc ... aaattaacagGTTCGAGGGCCTTATCTAGGCAGCATGGACTTACTGGTGCCTCTGCAGCGG
EST: gi|100378561|gb|BY968661.1|BY968661
EST:     TGGCGGAGAATTCATGGCGTCAAGGAGAATTGGAGGGGTGTTGCTCGCAG                         GTTCGAGGGCCTTATCTAGGCAGCATGGACTTACTGGTGCCTCTGCAGCGG
genomic: TGGCGGAGAATTCATGGCGTCAAGGAGAATTGGAGGGGTGTTGCTCGCAGgtgggtactc ... aaattaacagGTTCGAGGGCCTTATCTAGGCAGCATGGACTTACTGGTGCCTCTGCAGCGG
EST: gi|100388495|gb|BY952097.1|BY952097
EST:     TGGCGGAGAATTCATGGCGTCAAGGAGAATTGGAGGGGTGTTGCTCGCAG                         GTTCGAGGGCCTTATCTAGGCAGCATGGACTTACTGGTGCCTCTGCAGCGG
genomic: TGGCGGAGAATTCATGGCGTCAAGGAGAATTGGAGGGGTGTTGCTCGCAGgtgggtactc ... aaattaacagGTTCGAGGGCCTTATCTAGGCAGCATGGACTTACTGGTGCCTCTGCAGCGG
EST: gi|100422802|gb|BY958008.1|BY958008
EST:     TGGCGGAGAATTCATGGCGTCAAGGAGAATTGGAGGGGTGTTGCTCGCAG                         GTTCGAGGGCCTTATCTAGGCAGCATGGACTTACTGGTGCCTCTGCAGCGG
genomic: TGGCGGAGAATTCATGGCGTCAAGGAGAATTGGAGGGGTGTTGCTCGCAGgtgggtactc ... aaattaacagGTTCGAGGGCCTTATCTAGGCAGCATGGACTTACTGGTGCCTCTGCAGCGG
EST: gi|100436049|gb|BY979354.1|BY979354
EST:     TGGCGGAGAATTCATGGCGTCAAGGAGAATTGGAGGGGTGTTGCTCGCAG                         GTTCGAGGGCCTTATCTAGGCAGCATGGACTTACTGGTGCCTCTGCAGCGG
genomic: TGGCGGAGAATTCATGGCGTCAAGGAGAATTGGAGGGGTGTTGCTCGCAGgtgggtactc ... aaattaacagGTTCGAGGGCCTTATCTAGGCAGCATGGACTTACTGGTGCCTCTGCAGCGG
EST: gi|100446294|gb|CJ970593.1|CJ970593
EST:     TGGCGGAGAATTCATGGCGTCAAGGAGAATTGGAGGGGTGTTGCTCGCAG                         GTTCGAGGGCCTTATCTAGGCAGCATGGACTTACTGGTGCCTCTGCAGCGG
genomic: TGGCGGAGAATTCATGGCGTCAAGGAGAATTGGAGGGGTGTTGCTCGCAGgtgggtactc ... aaattaacagGTTCGAGGGCCTTATCTAGGCAGCATGGACTTACTGGTGCCTCTGCAGCGG
EST: gi|100445835|gb|CJ970134.1|CJ970134
EST:     TGGCGGAGAATTCATGGCGTCAAGGAGAATTGGAGGGGTGTTGCTCGCAG                         GTTCGAGGGCCTTATCTAGGCAGCATGGACTTACTGGTGCCTCTGCAGCGG
genomic: TGGCGGAGAATTCATGGCGTCAAGGAGAATTGGAGGGGTGTTGCTCGCAGgtgggtactc ... aaattaacagGTTCGAGGGCCTTATCTAGGCAGCATGGACTTACTGGTGCCTCTGCAGCGG
EST: gi|100361912|gb|BY947689.1|BY947689
EST:     TGGCGGAGAATTCATGGCGTCAAGGAGAATTGGAGGGGTGTTGCTCGCAG                         GTTCGAGGGCCTTATCTAGGCAGCATGGACTTACTGGTGCCTCTGCAGCGG
genomic: TGGCGGAGAATTCATGGCGTCAAGGAGAATTGGAGGGGTGTTGCTCGCAGgtgggtactc ... aaattaacagGTTCGAGGGCCTTATCTAGGCAGCATGGACTTACTGGTGCCTCTGCAGCGG
EST: gi|100452339|gb|CJ975221.1|CJ975221
EST:     TGGCGGAGAATTCATGGCGTCAAGGAGAATTGGAGGGGTGTTGCTCGCAG                         GTTCGAGGGCCTTATCTAGGCAGCATGGACTTACTGGTGCCTCTGCAGCGG
genomic: TGGCGGAGAATTCATGGCGTCAAGGAGAATTGGAGGGGTGTTGCTCGCAGgtgggtactc ... aaattaacagGTTCGAGGGCCTTATCTAGGCAGCATGGACTTACTGGTGCCTCTGCAGCGG
EST: gi|100445486|gb|CJ975635.1|CJ975635
EST:     TGGCGGAGAATTCATGGCGTCAAGGAGAATTGGAGGGGTGTTGCTCGCAG                         GTTCGAGGGCCTTATCTAGGCAGCATGGACTTACTGGTGCCTCTGCAGCGG
genomic: TGGCGGAGAATTCATGGCGTCAAGGAGAATTGGAGGGGTGTTGCTCGCAGgtgggtactc ... aaattaacagGTTCGAGGGCCTTATCTAGGCAGCATGGACTTACTGGTGCCTCTGCAGCGG
EST: gi|208384825|gb|DC907438.1|DC907438
EST:     TGGCGGAGAATTCATGGCGTCAAGGAGAATTGGAGGGGTGTTGCTCGCAG                         GTTCGAGGGCCTTATCTAGGCAGCATGGACTTACTGGTGCCTCTGCAGCGG
genomic: TGGCGGAGAATTCATGGCGTCAAGGAGAATTGGAGGGGTGTTGCTCGCAGgtgggtactc ... aaattaacagGTTCGAGGGCCTTATCTAGGCAGCATGGACTTACTGGTGCCTCTGCAGCGG
EST: gi|100397747|gb|BY990380.1|BY990380
EST:     TGGCGGAGAATTCATGGCGTCAAGGAGAATTGGAGGGGTGTTGCTCGCAG                         GTTCGAGGGCCTTATCTAGGCAGCATGGACTTACTGGTGCCTCTGCAGCGG
genomic: TGGCGGAGAATTCATGGCGTCAAGGAGAATTGGAGGGGTGTTGCTCGCAGgtgggtactc ... aaattaacagGTTCGAGGGCCTTATCTAGGCAGCATGGACTTACTGGTGCCTCTGCAGCGG
EST: gi|100364728|gb|BY947878.1|BY947878
EST:     TGGCGGAGAATTCATGGCGTCAAGGAGAATTGGAGGGGTGTTGCTCGCAG                         GTTCGAGGGCCTTATCTAGGCAGCATGGACTTACTGGTGCCTCTGCAGCGG
genomic: TGGCGGAGAATTCATGGCGTCAAGGAGAATTGGAGGGGTGTTGCTCGCAGgtgggtactc ... aaattaacagGTTCGAGGGCCTTATCTAGGCAGCATGGACTTACTGGTGCCTCTGCAGCGG
EST: gi|100385568|gb|BY969905.1|BY969905
EST:     TGGCGGAGAATTCATGGCGTCAAGGAGAATTGGAGGGGTGTTGCTCGCAG                         GTTCGAGGGCCTTATCTAGGCAGCATGGACTTACTGGTGCCTCTGCAGCGG
genomic: TGGCGGAGAATTCATGGCGTCAAGGAGAATTGGAGGGGTGTTGCTCGCAGgtgggtactc ... aaattaacagGTTCGAGGGCCTTATCTAGGCAGCATGGACTTACTGGTGCCTCTGCAGCGG
EST: gi|67573259|gb|BJ946083.1|BJ946083
EST:     TGGCGGAGAATTCATGGCGTCAAGGAGAATTGGAGGGGTGTTGCTCGCAG                         GTTCGAGGGCCTTATCTAGGCAGCATGGACTTACTGGTGCCTCTGCAGCGG
genomic: TGGCGGAGAATTCATGGCGTCAAGGAGAATTGGAGGGGTGTTGCTCGCAGgtgggtactc ... aaattaacagGTTCGAGGGCCTTATCTAGGCAGCATGGACTTACTGGTGCCTCTGCAGCGG
EST: gi|100426321|gb|BY958839.1|BY958839
EST:     TGGCGGAGAATTCATGGCGTCAAGGAGAATTGGAGGGGTGTTGCTCGCAG                         GTTCGAGGGCCTTATCTAGGCAGCATGGACTTACTGGTGCCTCTGCAGCGG
genomic: TGGCGGAGAATTCATGGCGTCAAGGAGAATTGGAGGGGTGTTGCTCGCAGgtgggtactc ... aaattaacagGTTCGAGGGCCTTATCTAGGCAGCATGGACTTACTGGTGCCTCTGCAGCGG
EST: gi|100401401|gb|BY990984.1|BY990984
EST:     TGGCGGAGAATTCATGGCGTCAAGGAGAATTGGAGGGGTGTTGCTCGCAG                         GTTCGAGGGCCTTATCTAGGCAGCATGGACTTACTGGTGCCTCTGCAGCGG
genomic: TGGCGGAGAATTCATGGCGTCAAGGAGAATTGGAGGGGTGTTGCTCGCAGgtgggtactc ... aaattaacagGTTCGAGGGCCTTATCTAGGCAGCATGGACTTACTGGTGCCTCTGCAGCGG
EST: gi|18359390|gb|BJ191451.1|BJ191451
EST:     TGGCGGAGAATTCATGGCGTCAAGGAGAATTGGAGGGGTGTTGCTCGCAG                         GTTCGAGGGCCTTATCTAGGCAGCATGGACTTACTGGTGCCTCTGCAGCGG
genomic: TGGCGGAGAATTCATGGCGTCAAGGAGAATTGGAGGGGTGTTGCTCGCAGgtgggtactc ... aaattaacagGTTCGAGGGCCTTATCTAGGCAGCATGGACTTACTGGTGCCTCTGCAGCGG
EST: gi|100362785|gb|BY947527.1|BY947527
EST:     TGGCGGAGAATTCATGGCGTCAAGGAGAATTGGAGGGGTGTTGCTCGCAG                         GTTCGAGGGCCTTATCTAGGCAGCATGGACTTACTGGTGCCTCTGCAGCGG
genomic: TGGCGGAGAATTCATGGCGTCAAGGAGAATTGGAGGGGTGTTGCTCGCAGgtgggtactc ... aaattaacagGTTCGAGGGCCTTATCTAGGCAGCATGGACTTACTGGTGCCTCTGCAGCGG
EST: gi|100452865|gb|CJ975482.1|CJ975482
EST:     TGGCGGAGAATTCATGGCGTCAAGGAGAATTGGAGGGGTGTTGCTCGCAG                         GTTCGAGGGCCTTATCTAGGCAGCATGGACTTACTGGTGCCTCTGCAGCGG
genomic: TGGCGGAGAATTCATGGCGTCAAGGAGAATTGGAGGGGTGTTGCTCGCAGgtgggtactc ... aaattaacagGTTCGAGGGCCTTATCTAGGCAGCATGGACTTACTGGTGCCTCTGCAGCGG
EST: gi|100366110|gb|BY967284.1|BY967284
EST:     TGGCGGAGAATTCATGGCGTCAAGGAGAATTGGAGGGGTGTTGCTCGCAG                         GTTCGAGGGCCTTATCTAGGCAGCATGGACTTACTGGTGCCTCTGCAGCGG
genomic: TGGCGGAGAATTCATGGCGTCAAGGAGAATTGGAGGGGTGTTGCTCGCAGgtgggtactc ... aaattaacagGTTCGAGGGCCTTATCTAGGCAGCATGGACTTACTGGTGCCTCTGCAGCGG
EST: gi|100441331|gb|BY962620.1|BY962620
EST:     TGGCGGAGAATTCATGGCGTCAAGGAGAATTGGAGGGGTGTTGCTCGCAG                         GTTCGAGGGCCTTATCTAGGCAGCATGGACTTACTGGTGCCTCTGCAGCGG
genomic: TGGCGGAGAATTCATGGCGTCAAGGAGAATTGGAGGGGTGTTGCTCGCAGgtgggtactc ... aaattaacagGTTCGAGGGCCTTATCTAGGCAGCATGGACTTACTGGTGCCTCTGCAGCGG
EST: gi|18374784|gb|BJ206362.1|BJ206362
EST:     TGGCGGAGAATTCATGGCGTCAAGGAGAATTGGAGGGGTGTTGCTCGCAG                         GTTCGAGGGCCTTATCTAGGCAGCATGGACTTACTGGTGCCTCTGCAGCGG
genomic: TGGCGGAGAATTCATGGCGTCAAGGAGAATTGGAGGGGTGTTGCTCGCAGgtgggtactc ... aaattaacagGTTCGAGGGCCTTATCTAGGCAGCATGGACTTACTGGTGCCTCTGCAGCGG
EST: gi|100452623|gb|CJ975362.1|CJ975362
EST:     TGGCGGAGAATTCATGGCGTCAAGGAGAATTGGAGGGGTGTTGCTCGCAG                         GTTCGAGGGCCTTATCTAGGCAGCATGGACTTACTGGTGCCTCTGCAGCGG
genomic: TGGCGGAGAATTCATGGCGTCAAGGAGAATTGGAGGGGTGTTGCTCGCAGgtgggtactc ... aaattaacagGTTCGAGGGCCTTATCTAGGCAGCATGGACTTACTGGTGCCTCTGCAGCGG
EST: gi|18332361|gb|BJ164374.1|BJ164374
EST:     TGGCGGAGAATTCATGGCGTCAAGGAGAATTGGAGGGGTGTTGCTCGCAG                         GTTCGAGGGCCTTATCTAGGCAGCATGGACTTACTGGTGCCTCTGCAGCGG
genomic: TGGCGGAGAATTCATGGCGTCAAGGAGAATTGGAGGGGTGTTGCTCGCAGgtgggtactc ... aaattaacagGTTCGAGGGCCTTATCTAGGCAGCATGGACTTACTGGTGCCTCTGCAGCGG
EST: gi|100396260|gb|BY972314.1|BY972314
EST:     TGGCGGAGAATTCATGGCGTCAAGGAGAGTTGGAGGGGTGTTGCTCGCAG                         GTTCGAGGGCCTTATCTAGGCAGCATGGACTTACTGGTGCCTCTGCAGCGG
genomic: TGGCGGAGAATTCATGGCGTCAAGGAGAATTGGAGGGGTGTTGCTCGCAGgtgggtactc ... aaattaacagGTTCGAGGGCCTTATCTAGGCAGCATGGACTTACTGGTGCCTCTGCAGCGG

RNA-Seq data


 ATGC   Supported by RNA-Seq exonic block that spans over the splice site

 atgs   Truncated intron sequence

Each block is as long as the maximal overhang of any read spanning the junction.
The score is the number of alignments spanning the junction.


Found data for 1 RNA-Seqlibrary.


Block sizes: 35 (upstream exon), 31 (downstream exon)
Score: 37

GTTTGAAGGTTGGTGCACTGCTGGAGCAGAGATTTTAGAGAGAAGTGGTGTGGCGGAGAATTCATGGCGTCAAGGAGAATTGGAGGGGTGTTGCTCGCAGgtgggtactc ... aaattaacagGTTCGAGGGCCTTATCTAGGCAGCATGGACTTACTGGTGCCTCTGCAGCGGACAGCCAAATCCTTCAAAGGCATCTACAGTTCTCTCGATTCAGCTATAG




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Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
GTTTGAAGGTTGGTGCACTGCTGGAGCAGAGATTTTAGAGAGAAGTGGTGTGGCGGAGAATTCATGGCGTCAAGGAGAATTGGAGGGGTGTTGCTCGCAGgtgggtactcacggtttttcttgggccggagattcactttaacgatcggttgattgatgttgtcttgagttattgctcgttgttacaggagtatgaactt

- - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  AAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  GGAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  TTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGG