Skip to another splice site:
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 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TTCTTTTACAATCTTCCTCAGCTTGATGAGATCGCCTCCTTTGCCGTTACTCGTCTTCCGCGCGTAGGGTTCGCCACCAGTTTCTGCGATGGgtaatcgtcgctcactctccgtttcatattttcgatctatgttttaccttctgtgtatgtttgcgcacgcgagtgttttgggtaccctgagtgtagttcttcaatcattaggtcgatacaaatgccttaccttgagaaaatttttatttgccttttattatttgtgttatttattgcag

Basic information

species Physcomitrella patens
transcript PP1S102_67V6.1
intron # 1
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|162206021|gb|FC382806.1|FC382806
EST:     TTCCGCGCGTAGGGTTCGCCACCAGTTTCTGCGATGG                         CCAAGATCAAAGTGCATGAGCTCCGCGCCAAGAGTAAAAATGAACTGCTCA
genomic: TTCCGCGCGTAGGGTTCGCCACCAGTTTCTGCGATGGgtaatcgtcg ... tttattgcagCCAAGATCAAAGTGCATGAGCTCCGCGCCAAGAGTAAAAATGAACTGCTCA
EST: gi|162204276|gb|FC379749.1|FC379749
EST:     GCCGTTACTCGTCTTCCGCGCGTAGGGTTCGCCACCAGTTTCTGCGATGG                         CCAAGATCAAAGTGCATGAGCTCCGCGCCAAGAGTAAAAATGAACTGCTCA
genomic: GCCGTTACTCGTCTTCCGCGCGTAGGGTTCGCCACCAGTTTCTGCGATGGgtaatcgtcg ... tttattgcagCCAAGATCAAAGTGCATGAGCTCCGCGCCAAGAGTAAAAATGAACTGCTCA
EST: gi|162245542|gb|FC423277.1|FC423277
EST:     GTCTTCCGCGCGTAGGGTTCGCCACCAGTTTCTGCGATGG                         CCAAGATCAAAGTGCATGAGCTCCGCGCCAAGAGTAAAAATGAACTGCTCA
genomic: GTCTTCCGCGCGTAGGGTTCGCCACCAGTTTCTGCGATGGgtaatcgtcg ... tttattgcagCCAAGATCAAAGTGCATGAGCTCCGCGCCAAGAGTAAAAATGAACTGCTCA
EST: gi|162215713|gb|FC391727.1|FC391727
EST:     TCGCCACCAGTTTCTGCGATGG                         CCAAGATCAAAGTGCATGAGCTCCGCGCCAAGAGTAAAAATGAACTGCTCA
genomic: TCGCCACCAGTTTCTGCGATGGgtaatcgtcg ... tttattgcagCCAAGATCAAAGTGCATGAGCTCCGCGCCAAGAGTAAAAATGAACTGCTCA
EST: gi|162230834|gb|FC406673.1|FC406673
EST:     GCCACCAGTTTTTGCGATGG                         CCAAGATCAAAGTGCATGAGCTCCGCGCCAAGAGTAAAAATGAACTGCTCA
genomic: GCCACCAGTTTCTGCGATGGgtaatcgtcg ... tttattgcagCCAAGATCAAAGTGCATGAGCTCCGCGCCAAGAGTAAAAATGAACTGCTCA
EST: gi|67720570|gb|BJ970829.1|BJ970829
EST:     GCCGTTACTCGTCTTCCGCGCGTAGGGTTCGCCACCAGTTTCTGCGATGG                         CCAAGATCAAAGTGCATGAGCTCCGCGCCAAGAGTAAGAATGAACTGCTCA
genomic: GCCGTTACTCGTCTTCCGCGCGTAGGGTTCGCCACCAGTTTCTGCGATGGgtaatcgtcg ... tttattgcagCCAAGATCAAAGTGCATGAGCTCCGCGCCAAGAGTAAAAATGAACTGCTCA
EST: gi|162238304|gb|FC415872.1|FC415872
EST:     GTCTTCCGCGCGTAGGGTTCGCCACCAGTTTCTGCGATGG                         CCAAGATCAAAGTGCATGAGCTCCGCGCCAAGAGTAAAAATGAACTGCTCA
genomic: GTCTTCCGCGCGTAGGGTTCGCCACCAGTTTCTGCGATGGgtaatcgtcg ... tttattgcagCCAAGATCAAAGTGCATGAGCTCCGCGCCAAGAGTAAAAATGAACTGCTCA
EST: gi|37849570|gb|BJ607578.1|BJ607578
EST:     GCCGTTACTCGTCTTCCGCGCGTAGGGTTCGCCACCAGTTTCTGCGATGG                         CCAAGATCAAAGTGCATGAGCTCCGCGCCAAGAGTAAAAATGAACTGCTCA
genomic: GCCGTTACTCGTCTTCCGCGCGTAGGGTTCGCCACCAGTTTCTGCGATGGgtaatcgtcg ... tttattgcagCCAAGATCAAAGTGCATGAGCTCCGCGCCAAGAGTAAAAATGAACTGCTCA
EST: gi|162220488|gb|FC396025.1|FC396025
EST:     CCACCAGTTTCTGCGATGG                         CCAAGATCAAAGTGCATGAGCTCCGCGCCAAGAGTAAAAATGAACTGCTCA
genomic: CCACCAGTTTCTGCGATGGgtaatcgtcg ... tttattgcagCCAAGATCAAAGTGCATGAGCTCCGCGCCAAGAGTAAAAATGAACTGCTCA
EST: gi|67698434|gb|BJ958667.1|BJ958667
EST:     GCCGTTACTCGTCTTCCGCGCGTAGGGTTCGCCACCAGTTTCTGCGATGG                         CCAAGATCAAAGTGCATGAGCTCCGCGCCAAGAGTAAAAATGAACTGCTCA
genomic: GCCGTTACTCGTCTTCCGCGCGTAGGGTTCGCCACCAGTTTCTGCGATGGgtaatcgtcg ... tttattgcagCCAAGATCAAAGTGCATGAGCTCCGCGCCAAGAGTAAAAATGAACTGCTCA
EST: gi|162238136|gb|FC414274.1|FC414274
EST:     GTCTTCCGCGCGTAGGGTTCGCCACCAGTTTCTGCGATGG                         CCAAGATCAAAGTGCATGAGCTCCGCGCCAAGAGTAAAAATGAACTGCTCA
genomic: GTCTTCCGCGCGTAGGGTTCGCCACCAGTTTCTGCGATGGgtaatcgtcg ... tttattgcagCCAAGATCAAAGTGCATGAGCTCCGCGCCAAGAGTAAAAATGAACTGCTCA
EST: gi|162244284|gb|FC419857.1|FC419857
EST:     GCCGTTACTCGTCTTCCGCGCGTAGGGTTCGCCACCAGTTTCTGCGATGG                         CCAAGATCAAAGTGCATGAGCTCCGCGCCAAGAGTAAAAATGAACTGCTCA
genomic: GCCGTTACTCGTCTTCCGCGCGTAGGGTTCGCCACCAGTTTCTGCGATGGgtaatcgtcg ... tttattgcagCCAAGATCAAAGTGCATGAGCTCCGCGCCAAGAGTAAAAATGAACTGCTCA
EST: gi|37823743|gb|BJ581809.1|BJ581809
EST:     GCCGTTACTCGTCTTCCGCGCGTAGGGTTCGCCACCAGTTTCTGCGATGG                         CCAAGATCAAAGTGCATGAGCTCCGCGCCAAGAGTAAAAATGAACTGCTCA
genomic: GCCGTTACTCGTCTTCCGCGCGTAGGGTTCGCCACCAGTTTCTGCGATGGgtaatcgtcg ... tttattgcagCCAAGATCAAAGTGCATGAGCTCCGCGCCAAGAGTAAAAATGAACTGCTCA
EST: gi|162254273|gb|FC429992.1|FC429992
EST:     GCCGTTACTCGTCTTCCGCGCGTAGGGTTCGCCACCAGTTTCTGCGATGG                         CCAAGATCAAAGTGCATGAGCTCCGCGCCAAGAGTAAAAATGAACTGCTCA
genomic: GCCGTTACTCGTCTTCCGCGCGTAGGGTTCGCCACCAGTTTCTGCGATGGgtaatcgtcg ... tttattgcagCCAAGATCAAAGTGCATGAGCTCCGCGCCAAGAGTAAAAATGAACTGCTCA
EST: gi|67702078|gb|BJ962311.1|BJ962311
EST:     GCCGTTACTCGTCTTCCGCGCGTAGGGTTCGCCACCAGTTTCTGCGATGG                         CCAAGATCAAAGTGCATGAGCTCCGCGCCAAGAGTAAGAATGAACTGCTCA
genomic: GCCGTTACTCGTCTTCCGCGCGTAGGGTTCGCCACCAGTTTCTGCGATGGgtaatcgtcg ... tttattgcagCCAAGATCAAAGTGCATGAGCTCCGCGCCAAGAGTAAAAATGAACTGCTCA
EST: gi|162272612|gb|FC447731.1|FC447731
EST:     GCCGTTACTCGTCTTCCGCGCGTAGGGTTCGCCACCAGTTTCTGCGATGG                         CCAAGATCAAAGTGCATGAGCTCCGCGCCAAGAGTAAAAATGAACTGCTCA
genomic: GCCGTTACTCGTCTTCCGCGCGTAGGGTTCGCCACCAGTTTCTGCGATGGgtaatcgtcg ... tttattgcagCCAAGATCAAAGTGCATGAGCTCCGCGCCAAGAGTAAAAATGAACTGCTCA
EST: gi|162226049|gb|FC401327.1|FC401327
EST:     CGTCTTCCGCGCGTAGGGTTCGCCACCAGTTTCTGCGATGG                         CCAAGATCAAAGTGCATGAGCTCCGCGCCAAGAGTAAAAATGAACTGCTCA
genomic: CGTCTTCCGCGCGTAGGGTTCGCCACCAGTTTCTGCGATGGgtaatcgtcg ... tttattgcagCCAAGATCAAAGTGCATGAGCTCCGCGCCAAGAGTAAAAATGAACTGCTCA
EST: gi|37837467|gb|BJ595475.1|BJ595475
EST:     GCCGTTACTCGTCTTCCGCGCGTAGGGTTCGCCACCAGTTTCTGCGATGG                         CCAAGATCAAAGTGCATGAGCTCCGCGCCAAGAGTAAAAATGAACTGCTCA
genomic: GCCGTTACTCGTCTTCCGCGCGTAGGGTTCGCCACCAGTTTCTGCGATGGgtaatcgtcg ... tttattgcagCCAAGATCAAAGTGCATGAGCTCCGCGCCAAGAGTAAAAATGAACTGCTCA
EST: gi|162206022|gb|FC382807.1|FC382807
EST:     CGTTACTCGTCTTCCGCGCGTAGGGTTCGCCACCAGTTTCTGCGATGG                         CCAAGATCAAAGTGCATGAGCTCCGCGCCAAGAGTAAAAATGAACTGCTCA
genomic: CGTTACTCGTCTTCCGCGCGTAGGGTTCGCCACCAGTTTCTGCGATGGgtaatcgtcg ... tttattgcagCCAAGATCAAAGTGCATGAGCTCCGCGCCAAGAGTAAAAATGAACTGCTCA
EST: gi|37822073|gb|BJ580139.1|BJ580139
EST:     CGCGTAGGNTTCGCCACCAGTTTCTGCGATGG                         CCAAGATCAAAGTGCATGAGCTCCGCGCCAAGAGTAAAAATGAACTGCTCA
genomic: CGCGTAGGGTTCGCCACCAGTTTCTGCGATGGgtaatcgtcg ... tttattgcagCCAAGATCAAAGTGCATGAGCTCCGCGCCAAGAGTAAAAATGAACTGCTCA
EST: gi|162252880|gb|FC429253.1|FC429253
EST:     TCGCCACCAGTTTCTGCGATGG                         CCAAGATCAAAGTGCATGAGCTCCGCGCCAAGAGTAAAAATGAACTGCTCA
genomic: TCGCCACCAGTTTCTGCGATGGgtaatcgtcg ... tttattgcagCCAAGATCAAAGTGCATGAGCTCCGCGCCAAGAGTAAAAATGAACTGCTCA
EST: gi|162211289|gb|FC387519.1|FC387519
EST:     GCCGTTACTCGTCTTCCGCGCGTAGGGTTCGCCACCAGTTTCTGCGATGG                         CCAAGATCAAAGTGCATGAGCTCCGCGCCAAGAGTAAAAATGAACTGCTCA
genomic: GCCGTTACTCGTCTTCCGCGCGTAGGGTTCGCCACCAGTTTCTGCGATGGgtaatcgtcg ... tttattgcagCCAAGATCAAAGTGCATGAGCTCCGCGCCAAGAGTAAAAATGAACTGCTCA
EST: gi|162220487|gb|FC396024.1|FC396024
EST:     CCACCAGTTTCTGCGATGG                         CCAAGATCAAAGTGCATGAGCTCCGCGCCAAGAGTAAAAATGAACTGCTCA
genomic: CCACCAGTTTCTGCGATGGgtaatcgtcg ... tttattgcagCCAAGATCAAAGTGCATGAGCTCCGCGCCAAGAGTAAAAATGAACTGCTCA
EST: gi|162272198|gb|FC448707.1|FC448707
EST:     CGCGCGTAGGGTTCGCCACCAGTTTCTGCGATGG                         CCAAGATCAAAGTGCATGAGCTCCGCGCCAAGAGTAAAAATGAACTGCTCA
genomic: CGCGCGTAGGGTTCGCCACCAGTTTCTGCGATGGgtaatcgtcg ... tttattgcagCCAAGATCAAAGTGCATGAGCTCCGCGCCAAGAGTAAAAATGAACTGCTCA
EST: gi|162203169|gb|FC379266.1|FC379266
EST:     GCCGTTACTCGTCTTCCGCGCGTAGGGTTCGCCACCAGTTTCTGCGATGG                         CCAAGATCAAAGTGCATGAGCTCCGCGCCAAGAGTAAAAATGAACTGCTCA
genomic: GCCGTTACTCGTCTTCCGCGCGTAGGGTTCGCCACCAGTTTCTGCGATGGgtaatcgtcg ... tttattgcagCCAAGATCAAAGTGCATGAGCTCCGCGCCAAGAGTAAAAATGAACTGCTCA
EST: gi|67716488|gb|BJ966748.1|BJ966748
EST:     GCCGTTACTCGTCTTCCGCGCGTAGGGTTCGCCACCAGTTTCTGCGATGG                         CCAAGATCAAAGTGCATGAGCTCCGCGCCAAGAGTAAAAATGAACTGCTCA
genomic: GCCGTTACTCGTCTTCCGCGCGTAGGGTTCGCCACCAGTTTCTGCGATGGgtaatcgtcg ... tttattgcagCCAAGATCAAAGTGCATGAGCTCCGCGCCAAGAGTAAAAATGAACTGCTCA
EST: gi|208392372|gb|DC904232.1|DC904232
EST:     GCCGTTACTCGTCTTCCGCGCGTAGGGTTCGCCACCAGTTTCTGCGATGG                         CCAAGATCAAAGTGCATGAGCTCCGCGCCAAGAGTAAAAATGAACTGCTCA
genomic: GCCGTTACTCGTCTTCCGCGCGTAGGGTTCGCCACCAGTTTCTGCGATGGgtaatcgtcg ... tttattgcagCCAAGATCAAAGTGCATGAGCTCCGCGCCAAGAGTAAAAATGAACTGCTCA
EST: gi|162233140|gb|FC408963.1|FC408963
EST:     GCCGTTACTCGTCTTCCGCGCGTAGGGTTCGCCACCAGTTTCTGCGATGG                         CCAAGATCAAAGTGCATGAGCTCCGCGCCAAGAGTAAAAATGAACTGCTCA
genomic: GCCGTTACTCGTCTTCCGCGCGTAGGGTTCGCCACCAGTTTCTGCGATGGgtaatcgtcg ... tttattgcagCCAAGATCAAAGTGCATGAGCTCCGCGCCAAGAGTAAAAATGAACTGCTCA
EST: gi|162213727|gb|FC390342.1|FC390342
EST:     GCCACCAGTTTCTGCGATGG                         CCAAGATCAAAGTGCATGAGCTCCGCGCCAAGAGTAAAAATGAACTGCTCA
genomic: GCCACCAGTTTCTGCGATGGgtaatcgtcg ... tttattgcagCCAAGATCAAAGTGCATGAGCTCCGCGCCAAGAGTAAAAATGAACTGCTCA
EST: gi|162215298|gb|FC391066.1|FC391066
EST:     GCCGTTACTCGTCTTCCGCGCGTAGGGTTCGCCACCAGTTTCTGCGATGG                         CCAAGATCAAAGTGCATGAGCTCCGCGCCAAGAGTAAAAATGAACTGCTCA
genomic: GCCGTTACTCGTCTTCCGCGCGTAGGGTTCGCCACCAGTTTCTGCGATGGgtaatcgtcg ... tttattgcagCCAAGATCAAAGTGCATGAGCTCCGCGCCAAGAGTAAAAATGAACTGCTCA
EST: gi|162230835|gb|FC406674.1|FC406674
EST:     GCCACCAGTTTCTGCGATGG                         CCAAGATCAAAGTGCATGAGCTCCGCGCCAAGAGTAAAAATGAACTGCTCA
genomic: GCCACCAGTTTCTGCGATGGgtaatcgtcg ... tttattgcagCCAAGATCAAAGTGCATGAGCTCCGCGCCAAGAGTAAAAATGAACTGCTCA
EST: gi|162207896|gb|FC383602.1|FC383602
EST:     GCCGTTACTCGTCTTCCGCGCGTAGGGTTCGCCACCAGTTTCTGCGATGG                         CCAAGATCAAAGTGCATGAGCTCCGCGCCAAGAGTAAAAATGAACTGCTCA
genomic: GCCGTTACTCGTCTTCCGCGCGTAGGGTTCGCCACCAGTTTCTGCGATGGgtaatcgtcg ... tttattgcagCCAAGATCAAAGTGCATGAGCTCCGCGCCAAGAGTAAAAATGAACTGCTCA
EST: gi|7584135|gb|AW700032.1|AW700032
EST:     GCCGTTACTCGTCTTCCGCGCGTAGGGTTCGCCACCAGTTTCTGCGATGG                         CCAAGATCAAAGTGCATGAGCTCCGCGCCAAGAGTAAAAATGAACTGCTCA
genomic: GCCGTTACTCGTCTTCCGCGCGTAGGGTTCGCCACCAGTTTCTGCGATGGgtaatcgtcg ... tttattgcagCCAAGATCAAAGTGCATGAGCTCCGCGCCAAGAGTAAAAATGAACTGCTCA
EST: gi|18358100|gb|BJ190159.1|BJ190159
EST:     GCCGTTACTCGTCTTCCGCGCGTAGGGTTCGCCACCAGTTTCTGCGATGG                         CCAAGATCAAAGTGCATGAGCTCCGCGCCAAGAGTAAAAATGAACTGCTCA
genomic: GCCGTTACTCGTCTTCCGCGCGTAGGGTTCGCCACCAGTTTCTGCGATGGgtaatcgtcg ... tttattgcagCCAAGATCAAAGTGCATGAGCTCCGCGCCAAGAGTAAAAATGAACTGCTCA
EST: gi|18375472|gb|BJ207050.1|BJ207050
EST:     GCCGTTACTCGTCTTCCGCGCGTAGGGTTCGCCACCAGTTTCTGCGATGG                         CCAAGATCAAAGTGCATGAGCTCCGCGCCAAGAGTAAAAATGAACTGCTCA
genomic: GCCGTTACTCGTCTTCCGCGCGTAGGGTTCGCCACCAGTTTCTGCGATGGgtaatcgtcg ... tttattgcagCCAAGATCAAAGTGCATGAGCTCCGCGCCAAGAGTAAAAATGAACTGCTCA
EST: gi|162226387|gb|FC403303.1|FC403303
EST:     GCCGTTACTCGTCTTCCGCGCGTAGGGTTCGCCACCAGTTTCTGCGATGG                         CCAAGATCAAAGTGCATGAGCTCCGCGCCAAGAGTAAAAATGAACTGCTCA
genomic: GCCGTTACTCGTCTTCCGCGCGTAGGGTTCGCCACCAGTTTCTGCGATGGgtaatcgtcg ... tttattgcagCCAAGATCAAAGTGCATGAGCTCCGCGCCAAGAGTAAAAATGAACTGCTCA
EST: gi|67576850|gb|BJ949674.1|BJ949674
EST:     GCCGTTACTCGTCTTCCGCGCGTAGGGTTCGCCACCAGTTTCTGCGATGG                         CCAAGATCAAAGTGCATGAGCTCCGCGCCAAGAGTAAAAATGAACTGCTCA
genomic: GCCGTTACTCGTCTTCCGCGCGTAGGGTTCGCCACCAGTTTCTGCGATGGgtaatcgtcg ... tttattgcagCCAAGATCAAAGTGCATGAGCTCCGCGCCAAGAGTAAAAATGAACTGCTCA
EST: gi|6102401|gb|AW126871.1|AW126871
EST:     GCCGTTACTCGTCTTCCGCGCGTAGGGTTCGCCACCAGTTTCTGCGATGG                         CCAAGATCAAAGTGCATGAGCTCCGCGCCAAGAGTAAAAATGAACTGCTCA
genomic: GCCGTTACTCGTCTTCCGCGCGTAGGGTTCGCCACCAGTTTCTGCGATGGgtaatcgtcg ... tttattgcagCCAAGATCAAAGTGCATGAGCTCCGCGCCAAGAGTAAAAATGAACTGCTCA
EST: gi|162226881|gb|FC403069.1|FC403069
EST:     GCCGTTACTCGTCTTCCGCGCGTAGGGTTCGCCACCAGTTTCTGCGATGG                         CCAAGATCAAAGTGCATGAGCTCCGCGCCAAGAGTAAAAATGAACTGCTCA
genomic: GCCGTTACTCGTCTTCCGCGCGTAGGGTTCGCCACCAGTTTCTGCGATGGgtaatcgtcg ... tttattgcagCCAAGATCAAAGTGCATGAGCTCCGCGCCAAGAGTAAAAATGAACTGCTCA
EST: gi|67574998|gb|BJ947822.1|BJ947822
EST:     GCCGTTACTCGTCTTCCGCGCGTAGGGTTCGCCACCAGTTTCTGCGATGG                         CCAAGATCAAAGTGCATGAGCTCCGCGCCAAGAGTAAAAATGAACTGCTCA
genomic: GCCGTTACTCGTCTTCCGCGCGTAGGGTTCGCCACCAGTTTCTGCGATGGgtaatcgtcg ... tttattgcagCCAAGATCAAAGTGCATGAGCTCCGCGCCAAGAGTAAAAATGAACTGCTCA
EST: gi|162224425|gb|FC399801.1|FC399801
EST:     GCCGTTACTCGTCTTCCGCGCGTAGGGTTCGCCACCAGTTTCTGCGATGG                         CCAAGATCAAAGTGCATGAGCTCCGCGCCAAGAGTAAAAATGAACTGCTCA
genomic: GCCGTTACTCGTCTTCCGCGCGTAGGGTTCGCCACCAGTTTCTGCGATGGgtaatcgtcg ... tttattgcagCCAAGATCAAAGTGCATGAGCTCCGCGCCAAGAGTAAAAATGAACTGCTCA
EST: gi|162268526|gb|FC444399.1|FC444399
EST:     GCCGTTACTCGTCTTCCGCGCGTAGGGTTCGCCACCAGTTTCTGCGATGG                         CCAAGATCAAAGTGCATGAGCTCCGCGCCAAGAGTAAAAATGAACTGCTCA
genomic: GCCGTTACTCGTCTTCCGCGCGTAGGGTTCGCCACCAGTTTCTGCGATGGgtaatcgtcg ... tttattgcagCCAAGATCAAAGTGCATGAGCTCCGCGCCAAGAGTAAAAATGAACTGCTCA
EST: gi|18344543|gb|BJ176584.1|BJ176584
EST:     GCCGTTACTCGTCTTCCGCGCGTAGGGTTCGCCACCAGTTTCTGCGATGG                         CCAAGATCAAAGTGCATGAGCTCCGCGCCAAGAGTAAAAATGAACTGCTCA
genomic: GCCGTTACTCGTCTTCCGCGCGTAGGGTTCGCCACCAGTTTCTGCGATGGgtaatcgtcg ... tttattgcagCCAAGATCAAAGTGCATGAGCTCCGCGCCAAGAGTAAAAATGAACTGCTCA
EST: gi|162203168|gb|FC379265.1|FC379265
EST:     TCCGCGCGTAGGGTTCGCCACCAGTTTCTGCGATGG                         CCAAGATCAAAGTGCATGAGCTCCGCGCCAAGAGTAAAAATGAACTGCTCA
genomic: TCCGCGCGTAGGGTTCGCCACCAGTTTCTGCGATGGgtaatcgtcg ... tttattgcagCCAAGATCAAAGTGCATGAGCTCCGCGCCAAGAGTAAAAATGAACTGCTCA
EST: gi|162254272|gb|FC429991.1|FC429991
EST:     GCCGTTACTCGTCTTCCGCGCGTAGGGTTCGCCACCAGTTTCTGCGATGG                         CCAAGATCAAAGTGCATGAGCTCCGCGCCAAGAGTAAAAATGAACTGCTCA
genomic: GCCGTTACTCGTCTTCCGCGCGTAGGGTTCGCCACCAGTTTCTGCGATGGgtaatcgtcg ... tttattgcagCCAAGATCAAAGTGCATGAGCTCCGCGCCAAGAGTAAAAATGAACTGCTCA
EST: gi|67725002|gb|BJ975261.1|BJ975261
EST:     GCCGTTACTCGTCTTCCGCGCGTAGGGTTCGCCACCAGTTTCTGCGATGG                         CCAAGATCAAAGTGCATGAGCTCCGCGCCAAGAGTAAAAATGAACTGCTCA
genomic: GCCGTTACTCGTCTTCCGCGCGTAGGGTTCGCCACCAGTTTCTGCGATGGgtaatcgtcg ... tttattgcagCCAAGATCAAAGTGCATGAGCTCCGCGCCAAGAGTAAAAATGAACTGCTCA
EST: gi|162263612|gb|FC438874.1|FC438874
EST:     GCCGTTACTCGTCTTCCGCGCGTAGGGTTCGCCACCAGTTTCTGCGATGG                         CCAAGATCAAAGTGCATGAGCTCCGCGCCAAGAGTAAAAATGAACTGCTCA
genomic: GCCGTTACTCGTCTTCCGCGCGTAGGGTTCGCCACCAGTTTCTGCGATGGgtaatcgtcg ... tttattgcagCCAAGATCAAAGTGCATGAGCTCCGCGCCAAGAGTAAAAATGAACTGCTCA
EST: gi|162238303|gb|FC415871.1|FC415871
EST:     GTCTTCCGCGCGTAGGGTTCGCCACCAGTTTCTGCGATGG                         CCAAGATCAAAGTGCATGAGCTCCGCGCCAAGAGTAAAAATGAACTGCTCA
genomic: GTCTTCCGCGCGTAGGGTTCGCCACCAGTTTCTGCGATGGgtaatcgtcg ... tttattgcagCCAAGATCAAAGTGCATGAGCTCCGCGCCAAGAGTAAAAATGAACTGCTCA
EST: gi|208351271|gb|DC918130.1|DC918130
EST:     GCCGTTACTCGTCTTCCGCGCGTAGGGTTCGCCACCAGTTTCTGCGATGG                         CCAAGATCAAAGTGCATGAGCTCCGCGCCAAGAGTAAAAATGAACTGCTCA
genomic: GCCGTTACTCGTCTTCCGCGCGTAGGGTTCGCCACCAGTTTCTGCGATGGgtaatcgtcg ... tttattgcagCCAAGATCAAAGTGCATGAGCTCCGCGCCAAGAGTAAAAATGAACTGCTCA

RNA-Seq data


 ATGC   Supported by RNA-Seq exonic block that spans over the splice site

 atgs   Truncated intron sequence

Each block is as long as the maximal overhang of any read spanning the junction.
The score is the number of alignments spanning the junction.


Found data for 1 RNA-Seqlibrary.


Block sizes: 35 (upstream exon), 30 (downstream exon)
Score: 45

TTCTTTTACAATCTTCCTCAGCTTGATGAGATCGCCTCCTTTGCCGTTACTCGTCTTCCGCGCGTAGGGTTCGCCACCAGTTTCTGCGATGGgtaatcgtcg ... tttattgcagCCAAGATCAAAGTGCATGAGCTCCGCGCCAAGAGTAAAAATGAACTGCTCAGCCAG




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