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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTGGTCTCCATCCAAAGGGAGGCAACATGAGGAAAGACAGCATGACGGGCTACGTTTTGTTCTTCGTGTCCCTGCTTGCATTGATCTACACCGGTGAAAGgtgctccaattctcaccagccttgggtttctggtggattgcgtcaatttggctttcgttttggatctttgagttcgcttgcggggtgatgtgtgtttgtg...

Basic information

species Physcomitrella patens
transcript PP1S101_254V6.1
intron # 1
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|162256410|gb|FC432441.1|FC432441
EST:     TACGTTTTGTTCTTCGTGTCCCTGCTTGCATTGATCTACACCGGTGAAAG                         GCTATGGGAGGATTATATAATAAAAGTACAGCTGAGTAGTACTGATCCGAG
genomic: TACGTTTTGTTCTTCGTGTCCCTGCTTGCATTGATCTACACCGGTGAAAGgtgctccaat ... tgagctccagGCTATGGGAGGATTATATAATAAAAGTACAGCTGAGTAGTACTGATCCGAG
EST: gi|208374807|gb|DC936430.1|DC936430
EST:     TACGTTTTGTTCTTCGTGTCCCTGCTTGCATTGATCTACACCGGTGAAAG                         GCTATGGGAGGATTATATAATAAAAGTACAGCTGAGTAGTACTGATCCGAG
genomic: TACGTTTTGTTCTTCGTGTCCCTGCTTGCATTGATCTACACCGGTGAAAGgtgctccaat ... tgagctccagGCTATGGGAGGATTATATAATAAAAGTACAGCTGAGTAGTACTGATCCGAG
EST: gi|100412621|gb|BY974825.1|BY974825
EST:     TACGTTTTGTTCTTCGTGTCCCTGCTTGCATTGATCTACACCGGTGAAAG                         GCTATGGGAGGATTATATAATAAAAGTACAGCTGAGTAGTACTGATCCGAG
genomic: TACGTTTTGTTCTTCGTGTCCCTGCTTGCATTGATCTACACCGGTGAAAGgtgctccaat ... tgagctccagGCTATGGGAGGATTATATAATAAAAGTACAGCTGAGTAGTACTGATCCGAG
EST: gi|100386356|gb|BY988023.1|BY988023
EST:     TACGTTTTGTTCTTCGTGTCCCTGCTTGCATTGATCTACACCGGTGAAAG                         GCTATGGGAGGATTATATAATAAAAGTACAGCTGAGTAGTACTGATCCGAG
genomic: TACGTTTTGTTCTTCGTGTCCCTGCTTGCATTGATCTACACCGGTGAAAGgtgctccaat ... tgagctccagGCTATGGGAGGATTATATAATAAAAGTACAGCTGAGTAGTACTGATCCGAG
EST: gi|100435307|gb|BY979177.1|BY979177
EST:     TACGTTTTGTTCTTCGTGTCCCTGCTTGCATTGATCTACACCGGTGAAAG                         GCTATGGGAGGATTATATAATAAAAGTACAGCTGAGTAGTACTGATCCGAG
genomic: TACGTTTTGTTCTTCGTGTCCCTGCTTGCATTGATCTACACCGGTGAAAGgtgctccaat ... tgagctccagGCTATGGGAGGATTATATAATAAAAGTACAGCTGAGTAGTACTGATCCGAG
EST: gi|100424461|gb|BY958499.1|BY958499
EST:     TACGTTTTGTTCTTCGTGTCCCTGCTTGCATTGATCTACACCGGTGAAAG                         GCTATGGGAGGATTATATAATAAAAGTACAGCTGAGTAGTACTGATCCGAG
genomic: TACGTTTTGTTCTTCGTGTCCCTGCTTGCATTGATCTACACCGGTGAAAGgtgctccaat ... tgagctccagGCTATGGGAGGATTATATAATAAAAGTACAGCTGAGTAGTACTGATCCGAG
EST: gi|100447407|gb|CJ971706.1|CJ971706
EST:     GTTCTTCGTGTCCCTGCTTGCATTGATCTACACCGGTGAAAG                         GCTATGGGAGGATTATATAATAAAAGTACAGCTGAGTAGTACTGATCCGAG
genomic: GTTCTTCGTGTCCCTGCTTGCATTGATCTACACCGGTGAAAGgtgctccaat ... tgagctccagGCTATGGGAGGATTATATAATAAAAGTACAGCTGAGTAGTACTGATCCGAG
EST: gi|100447901|gb|CJ972200.1|CJ972200
EST:     TACGTTTTGTTCTTCGTGTCCCTGCTTGCATTGATCTACACCGGTGAAAG                         GCTATGGGAGGGTTATATAATAAAAGTACAGCTGAGTAGTACTGATCCGAG
genomic: TACGTTTTGTTCTTCGTGTCCCTGCTTGCATTGATCTACACCGGTGAAAGgtgctccaat ... tgagctccagGCTATGGGAGGATTATATAATAAAAGTACAGCTGAGTAGTACTGATCCGAG