1 5' 3' | 2 5' 3' | 3 5' 3' |
ACCCCCGGTCTTTTTTTTTTTTAGTGTTCTGTGTTTTTGGGTTCGGGCACGCCCCGCAGCAGATTCCGGCGATTTTCATCACGCAGCCATGAGCTTCCGAgttcgtaacctccttcttcctctcttgtcatttcaatcctaaatgtgttacgcatttcgactttgcccgtggaaatggaagatgtgaatatgtggaaaag...
species | Physcomitrella patens |
transcript | PP1S101_218V6.1 |
intron # | 1 |
splice site | 5' |
intron type | U2 |
EST: GCCCCGCAGCAGATTCCGGCGATTTTCATCACGCAGCCATGAGCTTCCGA TTTCACCAGTACCAGGTGGTGGGGCGGGCCCTCCCAACAGCTACCAATGAAEST: gi|18326955|gb|BJ158956.1|BJ158956
genomic: GCCCCGCAGCAGATTCCGGCGATTTTCATCACGCAGCCATGAGCTTCCGAgttcgtaacc ... ggtacaacagTTTCACCAGTACCAGGTGGTGGGGCGGGCCCTCCCAACAGCTACCAATGAA
EST: GCCCCGCAGCAGATTCCGGCGATTTTCATCACGCAGCCATGAGCTTCCGA TTTCACCAGTACCAGGTGGTGGGGCGGGCCCTCCCAACAGCTACCAATGAAEST: gi|37846860|gb|BJ604868.1|BJ604868
genomic: GCCCCGCAGCAGATTCCGGCGATTTTCATCACGCAGCCATGAGCTTCCGAgttcgtaacc ... ggtacaacagTTTCACCAGTACCAGGTGGTGGGGCGGGCCCTCCCAACAGCTACCAATGAA
EST: GCCCCGCAGCAGATTCCGGCGATTTTCATCACGCAGCCATGAGCTTCCGA TTTCACCAGTACCAGGTGGTGGGGCGGGCCCTCCCAACCAAGGTACCAATGEST: gi|18366480|gb|BJ198559.1|BJ198559
genomic: GCCCCGCAGCAGATTCCGGCGATTTTCATCACGCAGCCATGAGCTTCCGAgttcgtaacc ... ggtacaacagTTTCACCAGTACCAGGTGGTGGGGCGGGCCCTCCCAA-C-AGCTACCAATG
EST: GCCCCGCAGCAGATTCCGGCGATTTTCATCACGCAGCCATGAGCTTCCGA TTTCACCAGTACCAGGTGGTGGGGCGGGCCCTCCCAACAGCTACCAATGAAEST: gi|162210883|gb|FC387293.1|FC387293
genomic: GCCCCGCAGCAGATTCCGGCGATTTTCATCACGCAGCCATGAGCTTCCGAgttcgtaacc ... ggtacaacagTTTCACCAGTACCAGGTGGTGGGGCGGGCCCTCCCAACAGCTACCAATGAA
EST: GCCCCGCAGCAGATTCCGGCGATTTTCATCACGCAGCCATGAGCTTCCGA TTTCACCAGTACCAGGTGGTGGGGCGGGCCCTCCCAACAGCTACCAATGAAEST: gi|162210988|gb|FC387294.1|FC387294
genomic: GCCCCGCAGCAGATTCCGGCGATTTTCATCACGCAGCCATGAGCTTCCGAgttcgtaacc ... ggtacaacagTTTCACCAGTACCAGGTGGTGGGGCGGGCCCTCCCAACAGCTACCAATGAA
EST: GCCCCGCAGCAGATTCCGGCGATTTTCATCACGCAGCCATGAGCTTCCGA TTTCACCAGTACCAGGTGGTGGGGCGGGCCCTCCCAACAGCTACCAATGAA
genomic: GCCCCGCAGCAGATTCCGGCGATTTTCATCACGCAGCCATGAGCTTCCGAgttcgtaacc ... ggtacaacagTTTCACCAGTACCAGGTGGTGGGGCGGGCCCTCCCAACAGCTACCAATGAA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ACCCCCGGTCTTTTTTTTTTTTAGTGTTCTGTGTTTTTGGGTTCGGGCACGCCCCGCAGCAGATTCCGGCGATTTTCATCACGCAGCCATGAGCTTCCGAgttcgtaacctccttcttcctctcttgtcatttcaatcctaaatgtgttacgcatttcgactttgcccgtggaaatggaagatgtgaatatgtggaaaag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGCTT