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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TGAGCGTGAGTGAGCTAGTGAGGGAGGGTTGAGTTGCGAGCACCTCATTCATGGCACAGTTGCCGCACTCTCTCTGTGTGTTTAGTGCAGTGGGGTGCAGgtgagttttccagcattacccccttttctctgctcaattctctcttctctcgcttctgctgaatgtttttgcgacttcaggtggcgatgactcagttatc...

Basic information

species Physcomitrella patens
transcript PP1S101_102V6.2
intron # 1
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|18352530|gb|BJ184584.1|BJ184584
EST:     ATGGCACAGTTGCCGCACTCTCTCTGTGTGTTTAGTGCAGTGGGGTGCAG                         AGCTCATGTTTTGTTCGTTGAGGGGAGCTCTTGACGTTGAAGGTCTCGGAC
genomic: ATGGCACAGTTGCCGCACTCTCTCTGTGTGTTTAGTGCAGTGGGGTGCAGgtgagttttc ... gtttttgcagAGCTCATGTTTTGTTCGTTGAGGGGAGCTCTTGACGTTGAAGGTCTCGGAC
EST: gi|18343308|gb|BJ175346.1|BJ175346
EST:     GTGCAGTGGGGTGCAG                         AGCTCATGTTTTGTTCGTTGAGGGGAGCTCTTGACGTTGAAGGTCTCGGAC
genomic: GTGCAGTGGGGTGCAGgtgagttttc ... gtttttgcagAGCTCATGTTTTGTTCGTTGAGGGGAGCTCTTGACGTTGAAGGTCTCGGAC
EST: gi|100410555|gb|BY992159.1|BY992159
EST:     ATGGCACAGTTGCCGCACTCTCTCTGTGTGTTCAGTGCAGTGGGGTGCAG                         AGCTCATGTTTTGTTCGTTGAGGGGAGCTCTTGACGTTGAAGGTCTCGGAC
genomic: ATGGCACAGTTGCCGCACTCTCTCTGTGTGTTTAGTGCAGTGGGGTGCAGgtgagttttc ... gtttttgcagAGCTCATGTTTTGTTCGTTGAGGGGAGCTCTTGACGTTGAAGGTCTCGGAC
EST: gi|208362017|gb|DC943472.1|DC943472
EST:     ATGGCACAGTTGCCGCACTCTCTCTGTGTGTTTAGTGCAGTGGGGTGCAG                         AGCTCATGTTTTGTTCGTTGAGGGGAGCTCTTGACGTTGAAGGTCTCGGAC
genomic: ATGGCACAGTTGCCGCACTCTCTCTGTGTGTTTAGTGCAGTGGGGTGCAGgtgagttttc ... gtttttgcagAGCTCATGTTTTGTTCGTTGAGGGGAGCTCTTGACGTTGAAGGTCTCGGAC
EST: gi|18330261|gb|BJ162267.1|BJ162267
EST:     ATGGCACAGTTGCCGCACTCTCTCTGTGTGTTTAGTGCAGTGGGGTGCAG                         AGCTCATGTTTTGTTCGTTGAGGGGAGCTCTTGACGTTGAAGGTCTCGGAC
genomic: ATGGCACAGTTGCCGCACTCTCTCTGTGTGTTTAGTGCAGTGGGGTGCAGgtgagttttc ... gtttttgcagAGCTCATGTTTTGTTCGTTGAGGGGAGCTCTTGACGTTGAAGGTCTCGGAC
EST: gi|100412788|gb|BY992436.1|BY992436
EST:     ATGGCACAGTTGCCGCACTCTCTCTGTGTGTTCAGTGCAGTGGGGTGCAG                         AGCTCATGTTTTGTTCGTTGAGGGGAGCTCTTGACGTTGAAGGTCTCGGAC
genomic: ATGGCACAGTTGCCGCACTCTCTCTGTGTGTTTAGTGCAGTGGGGTGCAGgtgagttttc ... gtttttgcagAGCTCATGTTTTGTTCGTTGAGGGGAGCTCTTGACGTTGAAGGTCTCGGAC
EST: gi|208357531|gb|DC934053.1|DC934053
EST:     ATGGCACAGTTGCCGCACTCTCTCTGTGTGTTTAGTGCAGTGGGGTGCAG                         AGCTCATGTTTTGTTCGTTGAGGGGAGCTCTTGACGTTGAAGGTCTCGGAC
genomic: ATGGCACAGTTGCCGCACTCTCTCTGTGTGTTTAGTGCAGTGGGGTGCAGgtgagttttc ... gtttttgcagAGCTCATGTTTTGTTCGTTGAGGGGAGCTCTTGACGTTGAAGGTCTCGGAC