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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TACGATGTGCCGCTTGTAGATACTTCAGCAATTGCTGGTGATTGAATCAGCTTTGTCGAAACGCGGATCTGATTAGGGTTTGCGGGTTTGTGCGGGGGAGgtagtcgcacaacgcaatcgaaggttttagggttttgttttttagctttcctttgggtcgacactctttgagatgattggattgtgttgtacctgaagat...

Basic information

species Physcomitrella patens
transcript PP1S100_55V6.3
intron # 1
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|18344541|gb|BJ176582.1|BJ176582
EST:     CTTTGTCGAAACGCGGATCTGATTAGGGTTTGCGGGTTTGTGCGGGGGAG                         GTTTGTAATGGAAGACCCTGAGGCACGGCGAGCGAGGCTGAAGGCCATGCG
genomic: CTTTGTCGAAACGCGGATCTGATTAGGGTTTGCGGGTTTGTGCGGGGGAGgtagtcgcac ... ttttgtacagGTTTGTAATGGAAGACCCTGAGGCACGGCGAGCGAGGCTGAAGGCCATGCG
EST: gi|162267977|gb|FC444058.1|FC444058
EST:     CTTTGTCGAAACGCGGATCTGATTAGGGTTTGCGGGTTTGTGCGGGGGAG                         GTTTGTAATGGAAGACCCTGAGGCACGGCGAGCGAGGCTGAAGGCCATGCG
genomic: CTTTGTCGAAACGCGGATCTGATTAGGGTTTGCGGGTTTGTGCGGGGGAGgtagtcgcac ... ttttgtacagGTTTGTAATGGAAGACCCTGAGGCACGGCGAGCGAGGCTGAAGGCCATGCG