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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TCTCAGATTGGTGGGTTCAAAATGGCGGCTGCACTACCGGAGTACCTCTGGTTCGTGGTCATTGGTGCGTTTGCGGCCTTCGGGTTCGGCTGGGGAAATGgtaagttcactttctcgtcttactcatcttcaagagttgtcacgaattcgataatccttgtctaaaatgttggtgtttcgtagttggcatagttcttgcc...

Basic information

species Physcomitrella patens
transcript PP1S100_198V6.1
intron # 1
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|18367452|gb|BJ199535.1|BJ199535
EST:     GTTCGTGGTCATTGGTGCGTTTGCGGCCTTCGGGTTCGGCTGGGGAAATG                         GAGCGAATGACTTGGCAAATGGGTTCGCTACCTCGGTGGGAAGCAAGACCC
genomic: GTTCGTGGTCATTGGTGCGTTTGCGGCCTTCGGGTTCGGCTGGGGAAATGgtaagttcac ... gggtgtgcagGAGCGAATGACTTGGCAAATGGGTTCGCTACCTCGGTGGGAAGCAAGACCC
EST: gi|18327597|gb|BJ159600.1|BJ159600
EST:     GTTCGTGGTCATTGGTGCGTTTGCGGCCTTCGGGTTCGGCTGGGGAAATG                         GAGCGAATGACTTGGCAAATGGGTTCGCTACCTCGGTGGGAAGCAAGACCC
genomic: GTTCGTGGTCATTGGTGCGTTTGCGGCCTTCGGGTTCGGCTGGGGAAATGgtaagttcac ... gggtgtgcagGAGCGAATGACTTGGCAAATGGGTTCGCTACCTCGGTGGGAAGCAAGACCC
EST: gi|18326585|gb|BJ158584.1|BJ158584
EST:     GTTCGTGGTCATTGGTGCGTTTGCGGCCTTCGGGTTCGGCTGGGGAAATG                         GAGCGAATGACTTGGCAAATGGGTTCGCTACCTCGGTGGGAAGCAAGACCC
genomic: GTTCGTGGTCATTGGTGCGTTTGCGGCCTTCGGGTTCGGCTGGGGAAATGgtaagttcac ... gggtgtgcagGAGCGAATGACTTGGCAAATGGGTTCGCTACCTCGGTGGGAAGCAAGACCC
EST: gi|18367270|gb|BJ199352.1|BJ199352
EST:     GTTCGTGGTCATTGGTGCGTTTGCGGCCTTCGGGTTCGGCTGGGGAAATG                         GAGCGAATGACTTGGCAAATGGGTTCGCTACCTCGGNGGGAAGCAAGACCC
genomic: GTTCGTGGTCATTGGTGCGTTTGCGGCCTTCGGGTTCGGCTGGGGAAATGgtaagttcac ... gggtgtgcagGAGCGAATGACTTGGCAAATGGGTTCGCTACCTCGGTGGGAAGCAAGACCC