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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AATGTGCTGAAGCTCTGTGATTTTGGCAATGCAATGCTTGCTGGAATGAACGAGGTTACACCTTATCTTGTGAGCCGTTTCTATCGTGCACCTGAGATAAgtgagttccttttctcgcacttcattttgttgtgtattcaatattcttcctactgttattctgtctccatactacatgtggtctgatgcacaatttttcttgcag

Basic information

species Oryza sativa
transcript LOC_Os12g44330.2
intron # 9
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os12g44330.2 (Oryza sativa), 5'ss of exon 9
lower sequence: GRMZM2G151236_T03 (Zea mays), 5'ss of exon 8
AATGTGCTGAAGCTCTGTGATTTTGGCAATGCAATGCTTGCTGGAATGAACGAGGTTACACCTTATCTTGTGAGCCGTTTCTATCGTGCACCTGAGATAAgtgagttccttt-tctcgcacttcattttgttgtgtattcaatattcttcctactgttattctgtctccatac-tacatgtggtctgatgcacaatttttcttgcag--------------------------------
|||||||| ||||| ||||||||||| ||||| ||||||||||| ||||| || ||||| ||||||||||| |||||||||||||| ||||||||||| ||||||||| ||  ||  ||| |   ||| | | |   |||    | |||  ||||  |||  |||||  |||  || || |      ||  | |  | |   |  |                                 
AATGTGCTCAAGCTATGTGATTTTGGGAATGCTATGCTTGCTGGTATGAATGAAGTTACGCCTTATCTTGTTAGCCGTTTCTATCGGGCACCTGAGATCAgtgagttctttcatcctgcaatgtttttagattttctttct---tacttagtactcatatgttgtctgtatatatatatatatatatatatatatatatatatatatatatatgtgacaactaacatgttttcttgcag

upper sequence: LOC_Os12g44330.2 (Oryza sativa), 5'ss of exon 9
lower sequence: GRMZM2G147811_T01 (Zea mays), 5'ss of exon 9
AATGTGCTGAAGCTCTGTGATTTTGGCAATGCAATGCTTGCTGGAATGAACGAGGTTACACCTTATCTTGTGAGCCGTTTCTATCGTGCACCTGAGATAAgtgagttccttttctcgcacttcattttgttgtgtattcaatatt--cttcctactgttattctgtctccatactacatgtggtctgatgcacaat-----ttttcttgcag
|||||||| ||| | |||||||||||||| || ||||||||||| ||||| || ||||| ||||||||||| |||||||||||||| |||||||||||  |||||||| ||       || |    |  || |  ||||  |     |||  | ||  |||  |||||  || |  | |     |  ||  |  |      |||||||||||
AATGTGCTCAAGGTATGTGATTTTGGCAACGCTATGCTTGCTGGTATGAATGAAGTTACGCCTTATCTTGTCAGCCGTTTCTATCGGGCACCTGAGATCGgtgagttctttcatctttacctgggatgtttttagattcctttcctactttatgctcatatgttgtctgtatgcatcttacctacctatatatgaaacatgttttcttgcag

upper sequence: LOC_Os12g44330.2 (Oryza sativa), 5'ss of exon 9
lower sequence: GLYMA10G42220.1 (Glycine max), 5'ss of exon 14
AATGTGCTGAAGCTCTGTGATTTTGGCAATGCAATGCTTGCTGGAATGAACGAGGTTACACCTTATCTTGTGAGCCGTTTCTATCGTGCACCTGAGATAAgtgagttccttttctcgc---acttcattttgttgtgtattcaatattcttcctactgttattctgtctc-catactacatgtggtctgatgcac-aatttttct-tgcag
|||||  ||||||| ||||| ||||||||||| ||| ||||||| |  || || |||||||| ||||||||||| ||||| |||||||| || || |||||| |||||| ||  | ||     || ||  | |  |     |||  |  ||  | ||  |    || |||    |   ||  || | ||       ||| ||||| |||||
AATGTTTTGAAGCTTTGTGACTTTGGCAATGCCATGTTTGCTGGTAAAAATGAAGTTACACCATATCTTGTGAGTCGTTTTTATCGTGCCCCGGAAATAAgtaagttccattcattgctatgatttatgatttcataatcccaaactgtttttttcttgttgaatgcctcatggatgccaactgttttggcttttgaatgtttctatgcag

upper sequence: LOC_Os12g44330.2 (Oryza sativa), 5'ss of exon 9
lower sequence: GLYMA01G20810.1 (Glycine max), 5'ss of exon 11
AATGTGCTGAAGCTCTGTGATTTTGGCAATGCAATGCTTGCTGGAATGAACGAGGTTACACCTTATCTTGTGAGCCGTTTCTATCGTGCACCTGAGATAAgtgagttccttttc----tcgcactt-cattttgttgtgtattcaatattcttcctactgttattctgtctccatactacatgtggtctgatgcac-----aatttttct-tgcag
|||    | ||| | ||||| ||||| ||||| ||| ||||||| |  || || |||||||| ||||||||||| || || |||||||| ||||| || ||| |||| |||| |      | | || ||| ||     ||  | |  ||| |||    ||| ||| ||  |   || |   | |   ||| ||  |     || |||||| |||||
AATACTTTTAAGTTTTGTGACTTTGGTAATGCCATGTTTGCTGGTAAAAATGAAGTTACACCATATCTTGTGAGTCGCTTTTATCGTGCCCCTGAAATCAgtaagttactttgcagtacagtaattgcatattcccaagtcctaaccatttttct---tgtcattttgaatatttaatgggtttttactgttgggctttcaaacttttctatgcag

upper sequence: LOC_Os12g44330.2 (Oryza sativa), 5'ss of exon 9
lower sequence: GLYMA20G24820.2 (Glycine max), 5'ss of exon 11
AATGTGCTGAAGCTCTGTGATTTTGGCAATGCAATGCTTGCTGGAATGAACGAGGTTACACCTTATCTTGTGAGCCGTTTCTATCGTGCACCTGAGATAAgtgagttccttttctcgcacttcattttgttgtgtattcaatattcttcctactgttattctgtctccatactacatgtggtctgatgcacaatttttcttgcag
|||||  ||||||| ||||| ||||| ||||| ||| ||||||| |  || || |||||||| ||||||||||| ||||| |||||||| || || |||||| ||| || |   |  ||       |   ||| | ||   | |||     | |||      ||  ||| |||   | | | ||  || |    |||   |||||
AATGTTTTGAAGCTTTGTGACTTTGGTAATGCCATGTTTGCTGGTAAAAATGAAGTTACACCATATCTTGTGAGTCGTTTTTATCGTGCCCCGGAAATAAgtaagtcccatagatttcataatccctaactgtttttttcttgttc-----aatgtctcatggttgcca-act--gttttggcttttgaatg--tttctatgcag

upper sequence: LOC_Os12g44330.2 (Oryza sativa), 5'ss of exon 9
lower sequence: AT3G25840.1 (Arabidopsis thaliana), 5'ss of exon 9
AATGTGCTGAAGCTCTGTGATTTTGGCAATGCAATGCTTGCTGGAATGAACGAGGTTACACCTTATCTTGTGAGCCGTTTCTATCGTGCACCTGAGATAAgtgagttccttttctcgcacttcattttgttgtgtattcaatattcttcctactgttattctgtctccatactacatgtggtctgatgcacaatttttcttgcag
|||||  | ||||| ||||||||||| ||||||||| |||| || |  ||||| |||||||| |||||||| || || || ||  |  | ||||| || ||| |||  | |            ||||||   ||||   |  | | |||  | || |      |    ||   ||    | |   || |    |||   ||||||
AATGTCTTAAAGCTTTGTGATTTTGGTAATGCAATGTTTGCAGGCAAAAACGAAGTTACACCGTATCTTGTTAGTCGCTTTTACAGATCCCCTGAAATTAgtaagtatcat------------attttgggttgtaaagaggacttttc--attggtgaagaat----atgtgactgaagcttctattc----tttccattgcag

upper sequence: LOC_Os12g44330.2 (Oryza sativa), 5'ss of exon 9
lower sequence: Vv01s0011g03350.t01 (Vitis vinifera), 5'ss of exon 9
AATGTGCTGAAGCTCTGTGATTTTGGCAATGCAATGCTTGCTGGAATGAACGAGGTTACACCTTATCTTGTGAGCCGTTTCTATCGTGCACCTGAGATAAgtgagttccttttctcgcacttcattttgttgtgtat-------tcaatattct-tcctactgttattctgtctccatactacatgtggtctgatgcacaatttttcttgcag------------------------------
||||| ||||| |||||||||||||| ||||| ||| || |||| |  || ||  ||||||| |||||||||||||| || |||||||| |||||||||||| ||| || ||       | ||   ||| | ||| |       | |||||  | | ||   ||||    || | |  | ||  | |  | ||  | |   | | ||||  |                               
AATGTCCTGAAACTCTGTGATTTTGGTAATGCCATGTTTTCTGGTAAAAATGAAATTACACCATATCTTGTGAGCCGCTTTTATCGTGCCCCTGAGATAAgtaagtcccattctcgaaccatcccgttgatttgtttgaaatgattaatataatcttctttagttaggtagtttgccaaataattatt-tttggagaatgctgtctcttaaatcatttagtctctaattctttccttctgcag