Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TGATGGCCGTAAGAGAGCTCTTCTCATTGGAGGTGGTATAGCGAACTTCACTGATGTCGCTGCTACATTCAGTGGCATCATTCGAGCTTTAAGAGAGAAGgcaagtttcgattggatcgttgttctgtccccaaccactcccacttgttgccattaaaatcttcatccatcttattattgtctggcttccaaatctggtggcag

Basic information

species Oryza sativa
transcript LOC_Os12g37870.1
intron # 9
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os12g37870.1 (Oryza sativa), 5'ss of exon 9
lower sequence: GRMZM2G034083_T01 (Zea mays), 5'ss of exon 9
TGATGGCCGTAAGAGAGCTCTTCTCATTGGAGGTGGTATAGCGAACTTCACTGATGTCGCTGCTACATTCAGTGGCATCATTCGAGCTTTAAGAGAGAAGgcaagtttcg-------attggatcgttgttctgt-ccccaaccactcccacttgttgccattaaaatcttcatccatcttatt-attgtctggcttccaaatctggtggcag
|||||||||||||||||| ||||| || ||||| || || || |||||||| ||||| ||| ||||||| |||||||||||||| |||||||||||||||| || ||  |        || | | |  ||||  | |||||||||||||||| | |  | ||| ||||||||| | ||||| ||  || | | | |||  |||||| |  |||
TGATGGCCGTAAGAGAGCCCTTCTAATCGGAGGAGGAATCGCTAACTTCACAGATGTTGCTTCTACATTTAGTGGCATCATTCGGGCTTTAAGAGAGAAGgtaaattgggccacgaagttagttagccgttcaattccccaaccactcccacctatctctatttaaatcttcaccaatcttgtttgttattttgtttctgaatctgattccag

upper sequence: LOC_Os12g37870.1 (Oryza sativa), 5'ss of exon 9
lower sequence: AT1G09430.1 (Arabidopsis thaliana), 5'ss of exon 10
TGATGGCCGTAAGAGAGCTCTTCTCATTGGAGGTGGTATAGCGAACTTCACTGATGTCGCTGCTACATTCAGTGGCATCATTCGAGCTTTAAGAGAGAAGgcaagtttcgattggatcgttgttctgtccccaaccactc-ccact-tgttgccattaa---------aatcttcatccatcttat---tattgtctggcttccaaatctggtg-gcag
||| || |||||  |||||||||| |||||||| || || || || ||||||||||| || ||||| ||||  || |||||||||||  ||||||| ||||     ||       | | ||  |       ||| || |  | ||| | ||   || ||         |||  |||   ||   ||   |  || |    ||     |    || ||||
TGACGGGCGTAAACGAGCTCTTCTAATTGGAGGAGGCATTGCCAATTTCACTGATGTGGCAGCTACTTTCAACGGTATCATTCGAGCGCTAAGAGAAAAGgtgctctttctcacaaactttagtgaacgaacaaacagttgctactgtattttgatgaagatgagaggaatgctcaagaatgaaatcgatgctgacctttttttgtgtgccatgagcag

upper sequence: LOC_Os12g37870.1 (Oryza sativa), 5'ss of exon 9
lower sequence: Vv14s0060g00550.t01 (Vitis vinifera), 5'ss of exon 10
TGATGGCCGTAAGAGAGCTCTTCTCATTGGAGGTGGTATAGCGAACTTCACTGATGTCGCTGCTACATTCAGTGGCATCATTCGAGCTTTAAGAGAGAAGgcaagtttcgattggatcgttgt-tctgtccccaaccactcccacttgttgccattaa---aatcttcatccatcttattattgtctggcttccaaatctggtggcag
|||||||||||||||||| |||||||||||||| ||||| || |||||||||||||| ||||| || |||| ||| ||  | || ||| | |  |||||||   | |    ||| ||  || | ||||   |       |  || || |   | | ||   ||  ||  | || ||| || || |||   || |   | |  || |||
TGATGGCCGTAAGAGAGCCCTTCTCATTGGAGGGGGTATTGCTAACTTCACTGATGTTGCTGCCACTTTCAATGGGATTGTCCGGGCTCTGAAGGAGAAGgtgtgatcaagttgaattattctctctggatcttggttgtttcaattctcatcctaaattcaagtttgcttcaacttttttttttctttttttctttttttctgacag

upper sequence: LOC_Os12g37870.1 (Oryza sativa), 5'ss of exon 9
lower sequence: PP1S7_156V6.2 (Physcomitrella patens), 5'ss of exon 11
TGATGGCCGTAAGAGAGCTCTTCTCATTGGAGGTGGTATAGCGAACTTCACTGATGTCGCTGCTACATTCAGTGGCATCATTCGAGCTTTAAGAGAGAAGgcaagtttc---gattggatcgttgttctgtccccaaccactcccacttgttgccattaaaatcttcatccatcttattattgtctggcttccaaatctggtggcag
|||||| ||    ||||| ||  || |||||||||| || || ||||||||||| || ||||||||||||| ||| || ||||| ||||| || || |||| ||  |||   |    |   ||   |||||       || |   |||  || | ||  ||     ||   |   |   |  |||    |      |      |   
TGATGGACGCCGAAGAGCGCTAGTCGTTGGAGGTGGAATTGCCAACTTCACTGACGTTGCTGCTACATTCAATGGTATTATTCGTGCTTTCAGGGAAAAGgtaaaattctgagccctgtatgtgcatctgtggttgtacagttggactgattactat-gaatcacgcacggaatctgacacagtccacatattctgttcatcag---

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|86844349|gb|CI337680.1|CI337680
EST:     CAGTGCCATCATTCGAGCTTTAAGAGAGAA-                         GAATCCAAATTGAAGGCTGCACGGATGAACATTTACGTTCGGAGAGGTGGT
genomic: CAGTGGCATCATTCGAGCTTTAAGAGAGAAGgcaagtttcg ... ctggtggcagGAATCCAAATTGAAGGCTGCACGGATGAACATTTACGTTCGGAGAGGTGGT
EST: gi|86435092|gb|CI106325.1|CI106325
EST:     CTGATGTCGCTGCTACATTCAGTGGCATCATTCGAGCTTTAAGAGAGAAG                         GAATCCAAATTGAAGGCTGCACGGATGAACATTTACGTTCGGAGAGGTGGT
genomic: CTGATGTCGCTGCTACATTCAGTGGCATCATTCGAGCTTTAAGAGAGAAGgcaagtttcg ... ctggtggcagGAATCCAAATTGAAGGCTGCACGGATGAACATTTACGTTCGGAGAGGTGGT
EST: gi|89190783|gb|CI392636.1|CI392636
EST:     CTGATGTCTCTGCTACATTCAGTGGCATCATTCGAGCTTTAAGAGAGAAG                         GAATCCAAATTGAAGGCTGCACGGATGAACATTTACGTTCGGAGAGGTGGT
genomic: CTGATGTCGCTGCTACATTCAGTGGCATCATTCGAGCTTTAAGAGAGAAGgcaagtttcg ... ctggtggcagGAATCCAAATTGAAGGCTGCACGGATGAACATTTACGTTCGGAGAGGTGGT
EST: gi|86538603|gb|CI178809.1|CI178809
EST:     CTGATGTCGCTGCTACATTCAGTGGCATCATTCGAGCTTTAAGAGAGAAG                         GAATCCAAATTGAAGGCTGCACGGATGAACATTTACGTTCGGAGAGGTGGT
genomic: CTGATGTCGCTGCTACATTCAGTGGCATCATTCGAGCTTTAAGAGAGAAGgcaagtttcg ... ctggtggcagGAATCCAAATTGAAGGCTGCACGGATGAACATTTACGTTCGGAGAGGTGGT
EST: gi|89168153|gb|CI109357.1|CI109357
EST:     CTGATGTCGCTGCTACATTCAGTGGCATCATTCGAGCTTTAAGAGAGAAG                         GAATCCAAATTGAAGGCTGCACGGATGAACATTTACGTTCGGAGAGGTGGT
genomic: CTGATGTCGCTGCTACATTCAGTGGCATCATTCGAGCTTTAAGAGAGAAGgcaagtttcg ... ctggtggcagGAATCCAAATTGAAGGCTGCACGGATGAACATTTACGTTCGGAGAGGTGGT
EST: gi|88248192|gb|CI248041.1|CI248041
EST:     CTGATGTCGCTGCTACATTCAGTGGCATCATTCGAGCTTTAAGAGAGAAG                         GAATCCAAATTGAAGGCTGCACGGATGAACATTTACGTTCGGAGAGGTGGT
genomic: CTGATGTCGCTGCTACATTCAGTGGCATCATTCGAGCTTTAAGAGAGAAGgcaagtttcg ... ctggtggcagGAATCCAAATTGAAGGCTGCACGGATGAACATTTACGTTCGGAGAGGTGGT
EST: gi|86873602|gb|CI329980.1|CI329980
EST:     CTGATGTCGCTGCTACATTCAGTGGCATCATTCGAGCTTTAAGAGAGAAG                         GAATCCAAATTGAAGGCTGCACGGATGAACATTTACGTTCGGAGAGGTGGT
genomic: CTGATGTCGCTGCTACATTCAGTGGCATCATTCGAGCTTTAAGAGAGAAGgcaagtttcg ... ctggtggcagGAATCCAAATTGAAGGCTGCACGGATGAACATTTACGTTCGGAGAGGTGGT
EST: gi|88974793|gb|CI023089.1|CI023089
EST:     CTGATGTCGCTGCTACATTCAGTGGCATCATTCGAGCTTTAAGAGAGAAG                         GAATCCAAATTGAAGGCTGCACGGATGAACATTTACGTTCGGAGAGGTGGT
genomic: CTGATGTCGCTGCTACATTCAGTGGCATCATTCGAGCTTTAAGAGAGAAGgcaagtttcg ... ctggtggcagGAATCCAAATTGAAGGCTGCACGGATGAACATTTACGTTCGGAGAGGTGGT
EST: gi|89194405|gb|CI116842.1|CI116842
EST:     CTGATGTCGCTGCTACATTTAGTGGCATCATTCGAGCTTTAAGAGAGAAG                         GAATCCAAATTGAAGGCTGCACGGATGAACATTTACGTTCGGAGAGGTGGT
genomic: CTGATGTCGCTGCTACATTCAGTGGCATCATTCGAGCTTTAAGAGAGAAGgcaagtttcg ... ctggtggcagGAATCCAAATTGAAGGCTGCACGGATGAACATTTACGTTCGGAGAGGTGGT
EST: gi|33691853|gb|CF320092.1|CF320092
EST:     TGAATGTCGCTGCTACATTCAGTGGCATCATTCGAGCTTTAAGAGAGAAG                         GAATCCAAATTGAAGGCTGCACGGATGAACATTTACGTTCGGAGAGGTGGT
genomic: TG-ATGTCGCTGCTACATTCAGTGGCATCATTCGAGCTTTAAGAGAGAAGgcaagtttcg ... ctggtggcagGAATCCAAATTGAAGGCTGCACGGATGAACATTTACGTTCGGAGAGGTGGT
EST: gi|89192020|gb|CI393377.1|CI393377
EST:     CTGATGTCGCTGCTACATTCAGTGGCATCATTCGAGCTTTAAGAGAGAAG                         GAATCCAAATTGAAGGCTGCACGGATG-ACATTTACGTTCGGAGAGGTGGT
genomic: CTGATGTCGCTGCTACATTCAGTGGCATCATTCGAGCTTTAAGAGAGAAGgcaagtttcg ... ctggtggcagGAATCCAAATTGAAGGCTGCACGGATGAACATTTACGTTCGGAGAGGTGGT
EST: gi|33807860|gb|CF329822.1|CF329822
EST:     CTGATGTCGCTGCTACATTCAGTGGCATCATTCGAGCTTTAAGAGAGAAG                         GAATCCAAATTGAAGGCTGCACGGATGAACATTTACGTTCGGAGAGGTGGT
genomic: CTGATGTCGCTGCTACATTCAGTGGCATCATTCGAGCTTTAAGAGAGAAGgcaagtttcg ... ctggtggcagGAATCCAAATTGAAGGCTGCACGGATGAACATTTACGTTCGGAGAGGTGGT
EST: gi|33691852|gb|CF320091.1|CF320091
EST:     CTGATGTCGCTGCTACATTCAGTGGCATCATTCGAGCTTTAAGAGAGAAG                         GAATCCAAATTGAAGGCTGCACGGATGAACATTTACGTTCGGAGAGGTGGT
genomic: CTGATGTCGCTGCTACATTCAGTGGCATCATTCGAGCTTTAAGAGAGAAGgcaagtttcg ... ctggtggcagGAATCCAAATTGAAGGCTGCACGGATGAACATTTACGTTCGGAGAGGTGGT
EST: gi|88252289|gb|CI350717.1|CI350717
EST:     CTGATGTCGCTGCTACATTCAGTGGCGTCATTCGAGCTTTAAGAGAGAAG                         GAATCCAAATTGAAGGCTGCACGGATGAACATTTACGTTCGGAGAGGTGGT
genomic: CTGATGTCGCTGCTACATTCAGTGGCATCATTCGAGCTTTAAGAGAGAAGgcaagtttcg ... ctggtggcagGAATCCAAATTGAAGGCTGCACGGATGAACATTTACGTTCGGAGAGGTGGT
EST: gi|33654437|gb|CF277051.1|CF277051
EST:     ACATTCAGTGGCATCATTCGAGCTTTAAGAGAGAAG                         GAATCCAAATTGAAGGCTGCACGGATGAACATTTACGTTCGGAGAGGTGGT
genomic: ACATTCAGTGGCATCATTCGAGCTTTAAGAGAGAAGgcaagtttcg ... ctggtggcagGAATCCAAATTGAAGGCTGCACGGATGAACATTTACGTTCGGAGAGGTGGT
EST: gi|88835204|gb|CI370507.1|CI370507
EST:     CTGATGTCGCTGCTACATTCAGTGGCATCATTCGAGCTTTAAGAGAGAAG                         GAATCCAAATTGAAGGCTGCACGGATGAACATTTACGTTCGGAGAGGTGGT
genomic: CTGATGTCGCTGCTACATTCAGTGGCATCATTCGAGCTTTAAGAGAGAAGgcaagtttcg ... ctggtggcagGAATCCAAATTGAAGGCTGCACGGATGAACATTTACGTTCGGAGAGGTGGT
EST: gi|13807582|gb|AU181999.1|AU181999
EST:     ATGTCGCTGCTACATTCAGTGGCATCATTCGAGCTTTAAGAGAGAAG                         GAATCCNAATTGAAGGCTGCACGGATGAACATTTACGTTCGGAGAGGTGGT
genomic: ATGTCGCTGCTACATTCAGTGGCATCATTCGAGCTTTAAGAGAGAAGgcaagtttcg ... ctggtggcagGAATCCAAATTGAAGGCTGCACGGATGAACATTTACGTTCGGAGAGGTGGT
EST: gi|88958825|gb|CI381628.1|CI381628
EST:     GTGGCATCATTCGAGCTTTAAGAGAGAAG                         GAATCCAAATTGAAGGCTGCACGGATGAACATTTACGTTCGGAGAGGTGGT
genomic: GTGGCATCATTCGAGCTTTAAGAGAGAAGgcaagtttcg ... ctggtggcagGAATCCAAATTGAAGGCTGCACGGATGAACATTTACGTTCGGAGAGGTGGT
EST: gi|88256470|gb|CI358858.1|CI358858
EST:     CTGATGTCGCTGCTACATTCAGTGGCATCATTCGAGCTTTAAGAGAGAAG                         GAATCCAAATTGAAGGCTGCACGGATGAACATTTACGTTCGGAGAGGTGGT
genomic: CTGATGTCGCTGCTACATTCAGTGGCATCATTCGAGCTTTAAGAGAGAAGgcaagtttcg ... ctggtggcagGAATCCAAATTGAAGGCTGCACGGATGAACATTTACGTTCGGAGAGGTGGT
EST: gi|58589105|gb|CF987413.1|CF987413
EST:     CTGATGTCGCTGCTACATTCAGTGGCATCATTCGAGCTTTAAGAGAGAAG                         GAATCCAAATTGAAGGCTGCACGGATGAACATTTACGTTCGGAGAGGTGGT
genomic: CTGATGTCGCTGCTACATTCAGTGGCATCATTCGAGCTTTAAGAGAGAAGgcaagtttcg ... ctggtggcagGAATCCAAATTGAAGGCTGCACGGATGAACATTTACGTTCGGAGAGGTGGT
EST: gi|88252101|gb|CI350529.1|CI350529
EST:     CTGATGTCGCTGCTACATTCAGTGGCATCATTCGAGCTTTAAGAGAGAAG                         GAATCCAAATTTAAGGCTGCACGGATGAACATTTACGTTCGGAGAGGTGGT
genomic: CTGATGTCGCTGCTACATTCAGTGGCATCATTCGAGCTTTAAGAGAGAAGgcaagtttcg ... ctggtggcagGAATCCAAATTGAAGGCTGCACGGATGAACATTTACGTTCGGAGAGGTGGT
EST: gi|88958869|gb|CI381672.1|CI381672
EST:     CATCATTCGAGCTTTAAGAGAGAAG                         GAATCCAAATTGAAGGCTGCACGGATGAACATTTACGTTCGGAGAGGTGGT
genomic: CATCATTCGAGCTTTAAGAGAGAAGgcaagtttcg ... ctggtggcagGAATCCAAATTGAAGGCTGCACGGATGAACATTTACGTTCGGAGAGGTGGT
EST: gi|86600480|gb|CI356237.1|CI356237
EST:     GCTACATTCAGTGGCATCATTCGAGCTTTAAGAGAGAAG                         GAATCCAAATTGAAGGCTGCACGGATGAACATTTACGTTCGGAGAGGTGGT
genomic: GCTACATTCAGTGGCATCATTCGAGCTTTAAGAGAGAAGgcaagtttcg ... ctggtggcagGAATCCAAATTGAAGGCTGCACGGATGAACATTTACGTTCGGAGAGGTGGT
EST: gi|88837529|gb|CI078889.1|CI078889
EST:     CTGATGTCGCTGCTACATTCAGTGGCATCATTCGAGCTTTAAGAGAGAAG                         GAATCCAAATTGAAGGCTGCACGGATGAACATTTACGTTCGGAGAGGTGGT
genomic: CTGATGTCGCTGCTACATTCAGTGGCATCATTCGAGCTTTAAGAGAGAAGgcaagtttcg ... ctggtggcagGAATCCAAATTGAAGGCTGCACGGATGAACATTTACGTTCGGAGAGGTGGT
EST: gi|14714109|gb|AU198048.1|AU198048
EST:     TCAGTGGCATCATTCGAGCTTTAAGAGAGAAG                         GAATCCAAATTGAAGGCTGCACGGATGAACATTTACGTTCGGAGAGGTGGT
genomic: TCAGTGGCATCATTCGAGCTTTAAGAGAGAAGgcaagtttcg ... ctggtggcagGAATCCAAATTGAAGGCTGCACGGATGAACATTTACGTTCGGAGAGGTGGT
EST: gi|86430220|gb|CI082643.1|CI082643
EST:     CTGATGTCGCTGCTACATTCAGTGGCATCATTCGAGCTTTAAGAGAGAAG                         GAATCCAAATTGAAGGCTGCACGGATGAACATTTACGTTCGGAGAGGTGGT
genomic: CTGATGTCGCTGCTACATTCAGTGGCATCATTCGAGCTTTAAGAGAGAAGgcaagtttcg ... ctggtggcagGAATCCAAATTGAAGGCTGCACGGATGAACATTTACGTTCGGAGAGGTGGT
EST: gi|88988070|gb|CI036040.1|CI036040
EST:     CAGTGGCATCATTCGAGCTTTAAGAGAGAAG                         GAATCCAAATTGAAGGCTGCACGGATGAACATTTACGTTCGGAGAGGTGGT
genomic: CAGTGGCATCATTCGAGCTTTAAGAGAGAAGgcaagtttcg ... ctggtggcagGAATCCAAATTGAAGGCTGCACGGATGAACATTTACGTTCGGAGAGGTGGT
EST: gi|88272743|gb|CI386598.1|CI386598
EST:     CTGATGTCGCTGCTACATTCAGTGGCATCATTCGAGCTTTAAGAGAGAAG                         GAATCCAAATTGAAGGCTGCACGGATGAACATTTACGTTCGGAGAGGTGGT
genomic: CTGATGTCGCTGCTACATTCAGTGGCATCATTCGAGCTTTAAGAGAGAAGgcaagtttcg ... ctggtggcagGAATCCAAATTGAAGGCTGCACGGATGAACATTTACGTTCGGAGAGGTGGT
EST: gi|87021578|gb|CI275977.1|CI275977
EST:     CTGATGTCGCTGCAACATTCAGTGGCATCATTCGAGCTTTAAGAGAGAAG                         GAATCCAAATTGAAGGCTGCACGGATGAACATTTACGTTCGGAGAGGTGGT
genomic: CTGATGTCGCTGCTACATTCAGTGGCATCATTCGAGCTTTAAGAGAGAAGgcaagtttcg ... ctggtggcagGAATCCAAATTGAAGGCTGCACGGATGAACATTTACGTTCGGAGAGGTGGT
EST: gi|86879910|gb|CI339987.1|CI339987
EST:     CTGATGTCGCTGCTACATTCAGTGGCATCATTCGAGCTTTAAGAGAGAAG                         GAATCCAGATTGAAGGCTGCACGGATGAACATTTACGTTCGGAGAGGTGGT
genomic: CTGATGTCGCTGCTACATTCAGTGGCATCATTCGAGCTTTAAGAGAGAAGgcaagtttcg ... ctggtggcagGAATCCAAATTGAAGGCTGCACGGATGAACATTTACGTTCGGAGAGGTGGT
EST: gi|29662348|gb|CB658623.1|CB658623
EST:     CTGATGTCGCTGCTACATTCAGTGGCATCATTCGAGCTTTCAGAGAGAAG                         GAATCCAAATTGAAGGCTGCACGGATGAACATTTACGTTCGGAGAGGTGGT
genomic: CTGATGTCGCTGCTACATTCAGTGGCATCATTCGAGCTTTAAGAGAGAAGgcaagtttcg ... ctggtggcagGAATCCAAATTGAAGGCTGCACGGATGAACATTTACGTTCGGAGAGGTGGT
EST: gi|88275977|gb|CI396581.1|CI396581
EST:     TGCTACATTCAGTGGCATCATTCGAGCTTTAAGAGAGAAG                         GAATCCAAATTGAAGGCTGCACGGATGAACATTTACCTTCGGAGAGGTGGT
genomic: TGCTACATTCAGTGGCATCATTCGAGCTTTAAGAGAGAAGgcaagtttcg ... ctggtggcagGAATCCAAATTGAAGGCTGCACGGATGAACATTTACGTTCGGAGAGGTGGT
EST: gi|29680113|gb|CB676388.1|CB676388
EST:     CTGATGTCGCTGCTACATTCAGTGGCATCATTCGAGCTTTAAGAGAGAAG                         GAATCCAAATTGAAGGCTGCACGGATGAACATTTACGTTCGGAGAGGTGGT
genomic: CTGATGTCGCTGCTACATTCAGTGGCATCATTCGAGCTTTAAGAGAGAAGgcaagtttcg ... ctggtggcagGAATCCAAATTGAAGGCTGCACGGATGAACATTTACGTTCGGAGAGGTGGT
EST: gi|29638061|gb|CB643070.1|CB643070
EST:     CTGATGTCGCTGCTACATTCAGTGGCATCATTCGAGCTTTAAGAGAGAAG                         GAATCCAAATTGAAGGCTGCACGGATGAACATTTACGTTCGGAGAGGTGGT
genomic: CTGATGTCGCTGCTACATTCAGTGGCATCATTCGAGCTTTAAGAGAGAAGgcaagtttcg ... ctggtggcagGAATCCAAATTGAAGGCTGCACGGATGAACATTTACGTTCGGAGAGGTGGT
EST: gi|86883369|gb|CI337989.1|CI337989
EST:     CTGATTTCGCTGCTACATTCAGTGGCATCATTCGAGCTTTAAGAGAGAAG                         GAATCCAAATTGAAGGCTGCACGGATGAACATTTACGTTCGGAGAGGTGGT
genomic: CTGATGTCGCTGCTACATTCAGTGGCATCATTCGAGCTTTAAGAGAGAAGgcaagtttcg ... ctggtggcagGAATCCAAATTGAAGGCTGCACGGATGAACATTTACGTTCGGAGAGGTGGT
EST: gi|88276042|gb|CI396646.1|CI396646
EST:     CTGATGTCGCTGCTACATTCAGTGGCATCATTCGAGCTTTAAGAGAGAAG                         GAATCCAAATTGAAGGCTGCACGTATGAACATTTACGTTCGGAGAGGTGGT
genomic: CTGATGTCGCTGCTACATTCAGTGGCATCATTCGAGCTTTAAGAGAGAAGgcaagtttcg ... ctggtggcagGAATCCAAATTGAAGGCTGCACGGATGAACATTTACGTTCGGAGAGGTGGT
EST: gi|86886730|gb|CI334644.1|CI334644
EST:     CTGATTTCCCTGGTACATTCAGTGGCATCATTCGAGCTTTAAGAGAGAAG                         GAATCCAAATTGAAGGGCTGCACGGATGAACATTTACGTTCGGAGAGGTGG
genomic: CTGATGTCGCTGCTACATTCAGTGGCATCATTCGAGCTTTAAGAGAGAAGgcaagtttcg ... ctggtggcagGAATCCAAATTGAA-GGCTGCACGGATGAACATTTACGTTCGGAGAGGTGG
EST: gi|29669994|gb|CB666269.1|CB666269
EST:     CTGATGTCGCTGCTACATTCAGTGGCATCATTCGAGCTTTAAGAGAGAAG                         GAATCCAAATTGAAGGCTGCCCGGATGAACATTTACGTTTGGAGAGGTGGT
genomic: CTGATGTCGCTGCTACATTCAGTGGCATCATTCGAGCTTTAAGAGAGAAGgcaagtttcg ... ctggtggcagGAATCCAAATTGAAGGCTGCACGGATGAACATTTACGTTCGGAGAGGTGGT
EST: gi|86852661|gb|CI321781.1|CI321781
EST:     CTGAGGTCGCTGCTACATTCAGTGGCATCATTCGAGCTTTAAGAGAGAAG                         GAATCCAAATTGAAGGCTGCACGGATGAACATTTACGTTCGGAGAGGGTGG
genomic: CTGATGTCGCTGCTACATTCAGTGGCATCATTCGAGCTTTAAGAGAGAAGgcaagtttcg ... ctggtggcagGAATCCAAATTGAAGGCTGCACGGATGAACATTTACGTTCGGAGA-GGTGG
EST: gi|88248053|gb|CI246671.1|CI246671
EST:     CTGATGTCGCTGCTACATTCAGTGGCATCATTCGAGCTTTAAGAGAGAAG                         GAATCCAAATTGAAGGCTGCACGGATGAACATTTACGTTCGGAGAGGTGGT
genomic: CTGATGTCGCTGCTACATTCAGTGGCATCATTCGAGCTTTAAGAGAGAAGgcaagtttcg ... ctggtggcagGAATCCAAATTGAAGGCTGCACGGATGAACATTTACGTTCGGAGAGGTGGT
EST: gi|702482|gb|D48773.1|D48773
EST:     CTGATGTCGCTGCTACATTCAGTGGCATCATTCGAGCTTTAAGAGAGAAG                         GAATCCAAATTGAAGGCTGCACGGATGAACATTTACGTTCGGAGAGGTGGT
genomic: CTGATGTCGCTGCTACATTCAGTGGCATCATTCGAGCTTTAAGAGAGAAGgcaagtttcg ... ctggtggcagGAATCCAAATTGAAGGCTGCACGGATGAACATTTACGTTCGGAGAGGTGGT
EST: gi|88257551|gb|CI360137.1|CI360137
EST:     CGAGCTTTAAGAGAGAAG                         GAATCCAAATTGAAGGCTGCACGGATGAACATTTACGTTCGGAGAGGTGGT
genomic: CGAGCTTTAAGAGAGAAGgcaagtttcg ... ctggtggcagGAATCCAAATTGAAGGCTGCACGGATGAACATTTACGTTCGGAGAGGTGGT
EST: gi|89165688|gb|CI102778.1|CI102778
EST:     CTGATGTCGCTGCTACATTCAGTGGCATCATTCGAGCTTTAAGAGAGAAG                         GAATCCAAATTGAAGGCTGCACGGATGAACATTTACGTTCGGAGAGGTGGT
genomic: CTGATGTCGCTGCTACATTCAGTGGCATCATTCGAGCTTTAAGAGAGAAGgcaagtttcg ... ctggtggcagGAATCCAAATTGAAGGCTGCACGGATGAACATTTACGTTCGGAGAGGTGGT
EST: gi|88245210|gb|CI245059.1|CI245059
EST:     CTGATGTCGCTGCTACATTCAGTGGCATCATTCGAGCTTTAAGAGAGAAG                         GAATCCCAATTGAAGGCTGCACGGATGAACATTTACGTTCGGAGAGGTGGT
genomic: CTGATGTCGCTGCTACATTCAGTGGCATCATTCGAGCTTTAAGAGAGAAGgcaagtttcg ... ctggtggcagGAATCCAAATTGAAGGCTGCACGGATGAACATTTACGTTCGGAGAGGTGGT
EST: gi|86871837|gb|CI332009.1|CI332009
EST:     CTGATGTCGCTGCTACATTCAGTGGCATCATTCGAGCTTTAAGAGAGAAG                         GAATCCAAATTGAAGGCTGCACGGATGAACATTTACGTTCGGAGAGGTGGT
genomic: CTGATGTCGCTGCTACATTCAGTGGCATCATTCGAGCTTTAAGAGAGAAGgcaagtttcg ... ctggtggcagGAATCCAAATTGAAGGCTGCACGGATGAACATTTACGTTCGGAGAGGTGGT
EST: gi|88276531|gb|CI397135.1|CI397135
EST:     GTCGCTGGTACATTCAGTGGCATCATTCGAGCTTTAAGAGAGAAG                         GAATCCAAATTGAAGGCTGCACGGATGAACATTTACGTTCGGAGAGGTGGT
genomic: GTCGCTGCTACATTCAGTGGCATCATTCGAGCTTTAAGAGAGAAGgcaagtttcg ... ctggtggcagGAATCCAAATTGAAGGCTGCACGGATGAACATTTACGTTCGGAGAGGTGGT
EST: gi|88297159|gb|CI545249.1|CI545249
EST:     CTACATTCAGTGGCATCATTCGAGCTTTAAGAGAGAAG                         GAATCCAAATTGAAGGCTGCACGGATGAACATTTACGTTCGGAGAGGTGGT
genomic: CTACATTCAGTGGCATCATTCGAGCTTTAAGAGAGAAGgcaagtttcg ... ctggtggcagGAATCCAAATTGAAGGCTGCACGGATGAACATTTACGTTCGGAGAGGTGGT
EST: gi|86825824|gb|CI362316.1|CI362316
EST:     CTGATGTCGCTGCTACATTCAGTGGCATCATTCGAGCTTTAAGAGAGAAG                         GAATCCAAAATTGAAGGCTGCACGGATGAACATTTACGTTCGGAGAGGTGG
genomic: CTGATGTCGCTGCTACATTCAGTGGCATCATTCGAGCTTTAAGAGAGAAGgcaagtttcg ... ctggtggcagGAATCC-AAATTGAAGGCTGCACGGATGAACATTTACGTTCGGAGAGGTGG
EST: gi|86908638|gb|CI318965.1|CI318965
EST:     CTGATGTCGCTGCTACATTCAGTGGCATCATTCGAGCTTTAAGAGAGAAG                         GAATCCAAATTGAAGGCTGCACGGATGAACATTTACGTTCGGAGAGGTGTT
genomic: CTGATGTCGCTGCTACATTCAGTGGCATCATTCGAGCTTTAAGAGAGAAGgcaagtttcg ... ctggtggcagGAATCCAAATTGAAGGCTGCACGGATGAACATTTACGTTCGGAGAGGTGGT
EST: gi|86839143|gb|CI331440.1|CI331440
EST:     CTGATGTCCCTGCTACATTCAGTGGCATCATTCGAGCTTTAAGAGAGAAG                         GAATCCAAATTGAAGGCTGCACGGATGAACATTTACGTTCGGAGAGGTGGT
genomic: CTGATGTCGCTGCTACATTCAGTGGCATCATTCGAGCTTTAAGAGAGAAGgcaagtttcg ... ctggtggcagGAATCCAAATTGAAGGCTGCACGGATGAACATTTACGTTCGGAGAGGTGGT

RNA-Seq data


 ATGC   Supported by RNA-Seq exonic block that spans over the splice site

 atgs   Truncated intron sequence

Each block is as long as the maximal overhang of any read spanning the junction.
The score is the number of alignments spanning the junction.


Found data for 1 RNA-Seqlibrary.


Block sizes: 75 (upstream exon), 73 (downstream exon)
Score: 121

TGATGGCCGTAAGAGAGCTCTTCTCATTGGAGGTGGTATAGCGAACTTCACTGATGTCGCTGCTACATTCAGTGGCATCATTCGAGCTTTAAGAGAGAAGgcaagtttcg ... ctggtggcagGAATCCAAATTGAAGGCTGCACGGATGAACATTTACGTTCGGAGAGGTGGTCCAAACTACCAAACTGGCCTTGCCAAAATGCGTACACTAGGTGCAGAAC




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Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
TGATGGCCGTAAGAGAGCTCTTCTCATTGGAGGTGGTATAGCGAACTTCACTGATGTCGCTGCTACATTCAGTGGCATCATTCGAGCTTTAAGAGAGAAGgcaagtttcgattggatcgttgttctgtccccaaccactcccacttgttgccattaaaatcttcatccatcttattattgtctggcttccaaatctggtggcag

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  GAGCTT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGA