1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' |
TTGTGATTGTGATGTTCAGGTGGATGTTCCAATCAAGTACCTGAACTTCTTCCTTGAAGATGACAATGAGCTCGAGCACATAAAGAAGgtaatacaaattatgctatatatgtagaggcgtagagctaatttgcctgatgtgtttctttaacatgttttcttcaactgatttccgctaacatttctgaaactcatcag
species | Oryza sativa |
transcript | LOC_Os12g35570.3 |
intron # | 9 |
splice site | 5' |
intron type | U2 |
EST: ACCTGAACTTCTTCCTTGAAGATGACAATGAGCTCGAGCACATAAAGAAG GAGTACAAGGAAGGAAGGATGCTGACGGGTGAAGTGAAGCAGCGCCTTGTTEST: gi|86432592|gb|CI086203.1|CI086203
genomic: ACCTGAACTTCTTCCTTGAAGATGACAATGAGCTCGAGCACATAAAGAAGgtaatacaaa ... aactcatcagGAGTACAAGGAAGGAAGGATGCTGACGGGTGAAGTGAAGCAGCGCCTTGTT
EST: ACCTGAACTTCTTCCTTGAAGATGACAATGAGCTCGAGCACATAAAGAAG GAGTACAAGGAAGGAAGGATGCTGACGGGTGAAGTGAAGCAGCGCCTTGTTEST: gi|88248644|gb|CI248493.1|CI248493
genomic: ACCTGAACTTCTTCCTTGAAGATGACAATGAGCTCGAGCACATAAAGAAGgtaatacaaa ... aactcatcagGAGTACAAGGAAGGAAGGATGCTGACGGGTGAAGTGAAGCAGCGCCTTGTT
EST: ACCTGAACTTCTTCCTTGAAGATGACAATGAGCTCGAGCACATAAAGAAG GAGTACAAGGAAGGAAGGATGCTGACGGGTGAAGTGAAGCAGCGCCTTGTTEST: gi|86426525|gb|CI071622.1|CI071622
genomic: ACCTGAACTTCTTCCTTGAAGATGACAATGAGCTCGAGCACATAAAGAAGgtaatacaaa ... aactcatcagGAGTACAAGGAAGGAAGGATGCTGACGGGTGAAGTGAAGCAGCGCCTTGTT
EST: ACCTGAACTTCTTCCTTGAAGATGACAATGAGCTCGAGCACATAAAGAAG GAGTACAAGGAAGGAAGGATGCTGACGGGTGAAGTGAAGCAGCGCCTTGTTEST: gi|89195763|gb|CI007182.1|CI007182
genomic: ACCTGAACTTCTTCCTTGAAGATGACAATGAGCTCGAGCACATAAAGAAGgtaatacaaa ... aactcatcagGAGTACAAGGAAGGAAGGATGCTGACGGGTGAAGTGAAGCAGCGCCTTGTT
EST: CCTTGAAGATGACAATGAGCTCGAGCACATAAAGAAG GAGTACAAGGAAGGAAGGATGCTGACGGGTGAAGTGAAGCAGCGCCTTGTTEST: gi|88262215|gb|CI365791.1|CI365791
genomic: CCTTGAAGATGACAATGAGCTCGAGCACATAAAGAAGgtaatacaaa ... aactcatcagGAGTACAAGGAAGGAAGGATGCTGACGGGTGAAGTGAAGCAGCGCCTTGTT
EST: AAGATGACAATGAGCTCGAGCACATAAAGAAG GAGTACAAGGAAGGAAGGATGCTGACGGGTGAAGTGAAGCAGCGCCTTGTTEST: gi|86434156|gb|CI094499.1|CI094499
genomic: AAGATGACAATGAGCTCGAGCACATAAAGAAGgtaatacaaa ... aactcatcagGAGTACAAGGAAGGAAGGATGCTGACGGGTGAAGTGAAGCAGCGCCTTGTT
EST: ACCTGAACTTCTTCCTTGAAGATGACAATGAGCTCGAGCACATAAAGAAG GAGTACAAGGAAGGAAGGATGCTGACGGGTGAAGTGAAGCAGCGCCTTGTTEST: gi|89191021|gb|CI392874.1|CI392874
genomic: ACCTGAACTTCTTCCTTGAAGATGACAATGAGCTCGAGCACATAAAGAAGgtaatacaaa ... aactcatcagGAGTACAAGGAAGGAAGGATGCTGACGGGTGAAGTGAAGCAGCGCCTTGTT
EST: AACTTCTTCCTTGAAGATGACAATGAGCTCGAGCACATAAAGAAG GAGTACAAGGAAGGAAGGATGCTGACGGGTGAAGTGAAGCAGCGCCTTGTTEST: gi|86538796|gb|CI179002.1|CI179002
genomic: AACTTCTTCCTTGAAGATGACAATGAGCTCGAGCACATAAAGAAGgtaatacaaa ... aactcatcagGAGTACAAGGAAGGAAGGATGCTGACGGGTGAAGTGAAGCAGCGCCTTGTT
EST: ACCTGAACTTCTTCCTTGAAGATGACAATGAGCTCGAGCACATAAAGAAG GAGTACAAGGAAGGAAGGATGCTGACGGGTGAAGTGAAGCAGCGCCTTGTTEST: gi|29674926|gb|CB671201.1|CB671201
genomic: ACCTGAACTTCTTCCTTGAAGATGACAATGAGCTCGAGCACATAAAGAAGgtaatacaaa ... aactcatcagGAGTACAAGGAAGGAAGGATGCTGACGGGTGAAGTGAAGCAGCGCCTTGTT
EST: ACCTGAACTTCTTCCTTGAAGATGACAATGAGCTCGAGCACATAAAGAAG GAGTACAAGGAAGGAAGGATGCTGACGGGTGAAGTGAAGCAGCGCCTTGTTEST: gi|89162323|gb|CI104651.1|CI104651
genomic: ACCTGAACTTCTTCCTTGAAGATGACAATGAGCTCGAGCACATAAAGAAGgtaatacaaa ... aactcatcagGAGTACAAGGAAGGAAGGATGCTGACGGGTGAAGTGAAGCAGCGCCTTGTT
EST: TTCTTCCTTGAAGATGACAATGAGCTCGAGCACATAAAGAAG GAGTACAAGGAAGGAAGGATGCTGACGGGTGAAGTGAAGCAGCGCCTTGTT
genomic: TTCTTCCTTGAAGATGACAATGAGCTCGAGCACATAAAGAAGgtaatacaaa ... aactcatcagGAGTACAAGGAAGGAAGGATGCTGACGGGTGAAGTGAAGCAGCGCCTTGTT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TTGTGATTGTGATGTTCAGGTGGATGTTCCAATCAAGTACCTGAACTTCTTCCTTGAAGATGACAATGAGCTCGAGCACATAAAGAAGgtaatacaaattatgctatatatgtagaggcgtagagctaatttgcctgatgtgtttctttaacatgttttcttcaactgatttccgctaacatttctgaaactcatcag
- - - - - - - - - - - - - - - - - - - - - - - - - - TTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG