1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
AGGAAGGATGCTGACGGGTGAAGTGAAGCAGCGCCTTGTTGCAGTTCTATCCGAACTGGTTGCGAGACATCAAAGAGCTAGAGCACTAGTGACCGAGGAGgtacacaactctatgcaatcttgcgcacttctttatattttgaagtacatttttccgtacgcacagatgcacccaagcatatcaaagaaatgccgtgata...
species | Oryza sativa |
transcript | LOC_Os12g35570.2 |
intron # | 9 |
splice site | 5' |
intron type | U2 |
EST: CCGAACTGGTTGCGAAACATCAAAGAGCTAGAGCACTAGTGACCGAGGAG ATGGTCGATGTATTTATGGCGGCGAAACCTCTTCCCAATATGTTTGGCTGAEST: gi|86538796|gb|CI179002.1|CI179002
genomic: CCGAACTGGTTGCGAGACATCAAAGAGCTAGAGCACTAGTGACCGAGGAGgtacacaact ... gtttgtgcagATGGTCGATGTATTTATGGCGGCGAGACCTCTTCCCAATATGTTTGGCTGA
EST: CCGAACTGGTTGCGAGACATCAAAGAGCTAGAGCACTAGTGACCGAGGAG ATGGTCGATGTATTTATGGCGGCGAGACCTCTTCCCAATATGTTTGGCTGAEST: gi|8527950|gb|AU092765.1|AU092765
genomic: CCGAACTGGTTGCGAGACATCAAAGAGCTAGAGCACTAGTGACCGAGGAGgtacacaact ... gtttgtgcagATGGTCGATGTATTTATGGCGGCGAGACCTCTTCCCAATATGTTTGGCTGA
EST: CCGAACTGGTTGCGAGACATCAAAGAGCTAGAGCACTAGTGACCGAGGAG ATGGTCGATGTATTTATGGCGGCGAGACCTCTTCCCAATATGTTTGGCTGAEST: gi|86413378|gb|CI067783.1|CI067783
genomic: CCGAACTGGTTGCGAGACATCAAAGAGCTAGAGCACTAGTGACCGAGGAGgtacacaact ... gtttgtgcagATGGTCGATGTATTTATGGCGGCGAGACCTCTTCCCAATATGTTTGGCTGA
EST: CCGAACTGGTTGCGAGACATCAAAGAGCTAGAGCACTAGTGACCGAGGAG ATGGTCGATGTATTTATGGCGGCGAGACCTCTTCCCAATATGTTTGGCTGAEST: gi|86432592|gb|CI086203.1|CI086203
genomic: CCGAACTGGTTGCGAGACATCAAAGAGCTAGAGCACTAGTGACCGAGGAGgtacacaact ... gtttgtgcagATGGTCGATGTATTTATGGCGGCGAGACCTCTTCCCAATATGTTTGGCTGA
EST: CCGAACTGGTTGCGAGACATCAAAGAGCTAGAGCACTAGTGACCGAGGAG ATGGTCGATGTATTTATGGCGGCGAGACCTCTTCCCAATATGTTTGGCTGAEST: gi|88317508|gb|CI672084.1|CI672084
genomic: CCGAACTGGTTGCGAGACATCAAAGAGCTAGAGCACTAGTGACCGAGGAGgtacacaact ... gtttgtgcagATGGTCGATGTATTTATGGCGGCGAGACCTCTTCCCAATATGTTTGGCTGA
EST: CCGAACTGGTTGCGAGACATCAAAGAGCTAGAGCACTAGTGACCGAGGAG ATGGTCGATGTATTTATGGCGGCGAGACCTCTTCCCAATATGTTTGGCTGAEST: gi|38475276|gb|CF959409.1|CF959409
genomic: CCGAACTGGTTGCGAGACATCAAAGAGCTAGAGCACTAGTGACCGAGGAGgtacacaact ... gtttgtgcagATGGTCGATGTATTTATGGCGGCGAGACCTCTTCCCAATATGTTTGGCTGA
EST: CCGAACTGGTTGCGAGACATCAAAGAGCTAGAGCACTAGTGACCGAGGAG ATGGTCGATGTATTTATGGCGGCGAGACCTCTTCCCAATATGTTTGGCTGAEST: gi|3760141|gb|C97399.1|C97399
genomic: CCGAACTGGTTGCGAGACATCAAAGAGCTAGAGCACTAGTGACCGAGGAGgtacacaact ... gtttgtgcagATGGTCGATGTATTTATGGCGGCGAGACCTCTTCCCAATATGTTTGGCTGA
EST: CCGAACTGGTTGCGAGACATCAAAGAGCTAGAGCACTAGTGACCGAGGAG ATGGTCGATGTATTTATGGCGGCGAGACCTCTTCCCAATATGTTTGGCTGAEST: gi|86426525|gb|CI071622.1|CI071622
genomic: CCGAACTGGTTGCGAGACATCAAAGAGCTAGAGCACTAGTGACCGAGGAGgtacacaact ... gtttgtgcagATGGTCGATGTATTTATGGCGGCGAGACCTCTTCCCAATATGTTTGGCTGA
EST: CCGAACTGGTTGCGAGACATCAAAGAGCTAGAGCACTAGTGACCGAGGAG ATGGTCGATGTATTTATGGCGGCGAGACCTCTTCCCAATATGTTTGGCTGAEST: gi|86883703|gb|CI328731.1|CI328731
genomic: CCGAACTGGTTGCGAGACATCAAAGAGCTAGAGCACTAGTGACCGAGGAGgtacacaact ... gtttgtgcagATGGTCGATGTATTTATGGCGGCGAGACCTCTTCCCAATATGTTTGGCTGA
EST: CCGAACTGGTTGCGAGACATCAAAGAGCTAGAGCACTAGTGACCGAGGAG ATGGTCGATGTATTTATGGCGGCGAGACCTCTTCCCAATATGTTTGGCTGAEST: gi|89195763|gb|CI007182.1|CI007182
genomic: CCGAACTGGTTGCGAGACATCAAAGAGCTAGAGCACTAGTGACCGAGGAGgtacacaact ... gtttgtgcagATGGTCGATGTATTTATGGCGGCGAGACCTCTTCCCAATATGTTTGGCTGA
EST: CCGAACTGGTTGCGAGACATCAAAGAGCTAGAGCACTAGTGACCGAGGAG ATGGTCGATGTATTTATGGCGGCGAGACCTCTTCCCAATATGTTTGGCTGAEST: gi|88262215|gb|CI365791.1|CI365791
genomic: CCGAACTGGTTGCGAGACATCAAAGAGCTAGAGCACTAGTGACCGAGGAGgtacacaact ... gtttgtgcagATGGTCGATGTATTTATGGCGGCGAGACCTCTTCCCAATATGTTTGGCTGA
EST: CCGAACTGGTTGCGAGACATCAAAGAGCTAGAGCACTAGTGACCGAGGAG ATGGTCGATGTATTTATGGCGGCGAGACCTCTTCCCAATATGTTTGGCTGAEST: gi|89183405|gb|CI045970.1|CI045970
genomic: CCGAACTGGTTGCGAGACATCAAAGAGCTAGAGCACTAGTGACCGAGGAGgtacacaact ... gtttgtgcagATGGTCGATGTATTTATGGCGGCGAGACCTCTTCCCAATATGTTTGGCTGA
EST: CCGAACTGGTTGCGAGACATCAAAGAGCTAGAGCACTAGTGACCGAGGAG ATGGTCGATGTATTTATGGCGGCGAGACCTCTTCCCAATATGTTTGGCTGAEST: gi|86426769|gb|CI071866.1|CI071866
genomic: CCGAACTGGTTGCGAGACATCAAAGAGCTAGAGCACTAGTGACCGAGGAGgtacacaact ... gtttgtgcagATGGTCGATGTATTTATGGCGGCGAGACCTCTTCCCAATATGTTTGGCTGA
EST: CCGAACTGGTTGCGAGACATCAAAGAGCTAGAGCACTAGTGACCGAGGAG ATGGTCGATGTATTTATGGCGGCGAGACCTCTTCCCAATATGTTTGGCTGAEST: gi|88248644|gb|CI248493.1|CI248493
genomic: CCGAACTGGTTGCGAGACATCAAAGAGCTAGAGCACTAGTGACCGAGGAGgtacacaact ... gtttgtgcagATGGTCGATGTATTTATGGCGGCGAGACCTCTTCCCAATATGTTTGGCTGA
EST: CCGAACTGGTTGCGAGACATCAAAGAGCTAGAGCACTAGTGACCGAGGAG ATGGTCGATGTATTTATGGCGGCGAGACCTCTTCCCAATATGTTTGGCTGAEST: gi|86598581|gb|CI355198.1|CI355198
genomic: CCGAACTGGTTGCGAGACATCAAAGAGCTAGAGCACTAGTGACCGAGGAGgtacacaact ... gtttgtgcagATGGTCGATGTATTTATGGCGGCGAGACCTCTTCCCAATATGTTTGGCTGA
EST: CCGAACTGGTTGCGAGACATCAAAGAGCTAGAGCACTAGTGACCGAGGAG ATGGTCGATGTATTTATGGCGGCGAGACCTCTTCCCAATATGTTTGGCTGAEST: gi|89191021|gb|CI392874.1|CI392874
genomic: CCGAACTGGTTGCGAGACATCAAAGAGCTAGAGCACTAGTGACCGAGGAGgtacacaact ... gtttgtgcagATGGTCGATGTATTTATGGCGGCGAGACCTCTTCCCAATATGTTTGGCTGA
EST: CCGAACTGGTTGCGAGACATCAAAGAGCTAGAGCACTAGTGACCGAGGAG ATGGTCGATGTATTTATGGCGGCGAGACCTCTTCCCAATATGTTTGGCTGAEST: gi|86434156|gb|CI094499.1|CI094499
genomic: CCGAACTGGTTGCGAGACATCAAAGAGCTAGAGCACTAGTGACCGAGGAGgtacacaact ... gtttgtgcagATGGTCGATGTATTTATGGCGGCGAGACCTCTTCCCAATATGTTTGGCTGA
EST: CCGAACTGGTTGCGAGACATCAAAGAGCTAGAGCACTAGTGACCGAGGAG ATGGTCGATGTATTTATGGCGGCGAGACCTCTTCCCAATATGTTTGGCTGAEST: gi|88269434|gb|CI380732.1|CI380732
genomic: CCGAACTGGTTGCGAGACATCAAAGAGCTAGAGCACTAGTGACCGAGGAGgtacacaact ... gtttgtgcagATGGTCGATGTATTTATGGCGGCGAGACCTCTTCCCAATATGTTTGGCTGA
EST: CCGAACTGGTTGCGAGACATCAAAGAGCTAGAGCACTAGTGACCGAGGAG ATGGTCGATGTATTTATGGCGGCGAGACCTCTTCCCAATATGTTTGGCTGAEST: gi|88270262|gb|CI385520.1|CI385520
genomic: CCGAACTGGTTGCGAGACATCAAAGAGCTAGAGCACTAGTGACCGAGGAGgtacacaact ... gtttgtgcagATGGTCGATGTATTTATGGCGGCGAGACCTCTTCCCAATATGTTTGGCTGA
EST: CCGAACTGGTTGCGAGACATCAAAGAGCTAGAGCACTAGTGACCGAGGAG ATGGTCGAT-TATTTATGCCGGCGAGACCTCTTCCCAATATGTTTGGCTGAEST: gi|88288817|gb|CI517948.1|CI517948
genomic: CCGAACTGGTTGCGAGACATCAAAGAGCTAGAGCACTAGTGACCGAGGAGgtacacaact ... gtttgtgcagATGGTCGATGTATTTATGGCGGCGAGACCTCTTCCCAATATGTTTGGCTGA
EST: CCGAACTGGTTGCGAGACATCAAAGAGCTAGAGCACTAGTGACCGAGGAG ATGGTCGATGTATTTATGGCGGCGAGACCTCTTCCCAATATGTTTGGCTGAEST: gi|8527958|gb|AU092773.1|AU092773
genomic: CCGAACTGGTTGCGAGACATCAAAGAGCTAGAGCACTAGTGACCGAGGAGgtacacaact ... gtttgtgcagATGGTCGATGTATTTATGGCGGCGAGACCTCTTCCCAATATGTTTGGCTGA
EST: CCGAACTGGTTGCGAGACATCAAAGAGCTAGAGCACTAGTGACCGAGGAG ATGGTCGATGTATTTATGGCGGCGAGACCTCTTCCCAATATGTTTGGCTGAEST: gi|88272557|gb|CI386412.1|CI386412
genomic: CCGAACTGGTTGCGAGACATCAAAGAGCTAGAGCACTAGTGACCGAGGAGgtacacaact ... gtttgtgcagATGGTCGATGTATTTATGGCGGCGAGACCTCTTCCCAATATGTTTGGCTGA
EST: CCGAACTGGTTGCGAGACATCAAAGAGCTAGAGCACTAGTGACCGAGGAG ATGGTCGATGTATTTATGGCGGCGAGACCTCTTCCCAATATGTTTGGCTGAEST: gi|89162323|gb|CI104651.1|CI104651
genomic: CCGAACTGGTTGCGAGACATCAAAGAGCTAGAGCACTAGTGACCGAGGAGgtacacaact ... gtttgtgcagATGGTCGATGTATTTATGGCGGCGAGACCTCTTCCCAATATGTTTGGCTGA
EST: CCGAACTGGTTGCGAGACATCAAAGAGCTAGAGCACTAGTGACCGAGGAG ATGGTCGATGTATTTATGGCGGCGAGACCTCTTCCCAATATGTTTGGCTGAEST: gi|218485927|gb|FG959165.1|FG959165
genomic: CCGAACTGGTTGCGAGACATCAAAGAGCTAGAGCACTAGTGACCGAGGAGgtacacaact ... gtttgtgcagATGGTCGATGTATTTATGGCGGCGAGACCTCTTCCCAATATGTTTGGCTGA
EST: CCGAACTGGTTGCGAGACATCAAAGAGCTAGAGCACTAGTGACCGAGGAG ATGGTCGATGTATTTATGGCGGCGAGACCTCTTCCCAATATGTTTGGCTGAEST: gi|88269034|gb|CI380332.1|CI380332
genomic: CCGAACTGGTTGCGAGACATCAAAGAGCTAGAGCACTAGTGACCGAGGAGgtacacaact ... gtttgtgcagATGGTCGATGTATTTATGGCGGCGAGACCTCTTCCCAATATGTTTGGCTGA
EST: CCGAACTGGTTGCGAGACATCAAAGAGCTAGAGCACTAGTGACCGAGGAG ATGGTCGATGTATTTATGGCGGCGAGACCTCTTCCCAATATGTTTGGCTGA
genomic: CCGAACTGGTTGCGAGACATCAAAGAGCTAGAGCACTAGTGACCGAGGAGgtacacaact ... gtttgtgcagATGGTCGATGTATTTATGGCGGCGAGACCTCTTCCCAATATGTTTGGCTGA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| AGGAAGGATGCTGACGGGTGAAGTGAAGCAGCGCCTTGTTGCAGTTCTATCCGAACTGGTTGCGAGACATCAAAGAGCTAGAGCACTAGTGACCGAGGAGgtacacaactctatgcaatcttgcgcacttctttatattttgaagtacatttttccgtacgcacagatgcacccaagcatatcaaagaaatgccgtgata
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -aaagaaa